Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0058

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcheV-1 and DVU0057 are separated by 259 nucleotidesDVU0057 and DVU0058 overlap by 4 nucleotidesDVU0058 and DVU0059 overlap by 4 nucleotides DVU0056: cheV-1 - chemotaxis protein CheV (TIGR), at 62,676 to 63,629 cheV-1 DVU0057: DVU0057 - transcriptional regulator, TetR family (TIGR), at 63,889 to 64,530 DVU0057 DVU0058: DVU0058 - efflux transporter, RND family, MFP subunit (TIGR), at 64,527 to 65,678 DVU0058 DVU0059: DVU0059 - AcrB/AcrD/AcrF family protein (TIGR), at 65,675 to 69,385 DVU0059 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.537 kb on + strandat 63.538 kb on - strandat 63.545 kb on - strandat 63.579 kb on + strandat 63.741 kb on + strandat 63.824 kb on + strandat 63.824 kb on + strandat 63.831 kb on - strandat 64.007 kb on + strand, within DVU0057at 64.077 kb on + strand, within DVU0057at 64.150 kb on + strand, within DVU0057at 64.229 kb on + strand, within DVU0057at 64.229 kb on + strand, within DVU0057at 64.229 kb on + strand, within DVU0057at 64.299 kb on - strand, within DVU0057at 64.345 kb on + strand, within DVU0057at 64.348 kb on - strand, within DVU0057at 64.414 kb on + strand, within DVU0057at 64.416 kb on + strand, within DVU0057at 64.416 kb on + strand, within DVU0057at 64.421 kb on + strand, within DVU0057at 64.421 kb on + strand, within DVU0057at 64.590 kb on - strandat 64.600 kb on - strandat 64.600 kb on - strandat 64.648 kb on - strand, within DVU0058at 64.649 kb on + strand, within DVU0058at 64.675 kb on + strand, within DVU0058at 64.675 kb on + strand, within DVU0058at 64.675 kb on + strand, within DVU0058at 64.683 kb on - strand, within DVU0058at 64.689 kb on + strand, within DVU0058at 64.702 kb on - strand, within DVU0058at 64.743 kb on + strand, within DVU0058at 64.819 kb on - strand, within DVU0058at 64.860 kb on - strand, within DVU0058at 64.884 kb on + strand, within DVU0058at 64.907 kb on + strand, within DVU0058at 64.915 kb on - strand, within DVU0058at 64.917 kb on + strand, within DVU0058at 64.925 kb on - strand, within DVU0058at 64.952 kb on + strand, within DVU0058at 64.999 kb on - strand, within DVU0058at 65.050 kb on - strand, within DVU0058at 65.073 kb on + strand, within DVU0058at 65.073 kb on + strand, within DVU0058at 65.073 kb on + strand, within DVU0058at 65.115 kb on + strand, within DVU0058at 65.116 kb on - strand, within DVU0058at 65.151 kb on - strand, within DVU0058at 65.177 kb on + strand, within DVU0058at 65.185 kb on - strand, within DVU0058at 65.185 kb on - strand, within DVU0058at 65.185 kb on - strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.218 kb on - strand, within DVU0058at 65.235 kb on + strand, within DVU0058at 65.246 kb on + strand, within DVU0058at 65.255 kb on - strand, within DVU0058at 65.257 kb on + strand, within DVU0058at 65.461 kb on + strand, within DVU0058at 65.469 kb on + strand, within DVU0058at 65.540 kb on - strand, within DVU0058at 65.589 kb on - strandat 65.594 kb on - strandat 65.621 kb on - strandat 65.744 kb on - strandat 65.782 kb on + strandat 65.782 kb on + strandat 65.782 kb on + strandat 65.782 kb on + strandat 65.790 kb on - strandat 65.790 kb on - strandat 65.798 kb on - strandat 65.818 kb on + strandat 65.876 kb on - strandat 65.946 kb on - strandat 65.953 kb on + strandat 66.014 kb on - strandat 66.019 kb on + strandat 66.022 kb on - strandat 66.024 kb on + strandat 66.024 kb on + strandat 66.081 kb on + strand, within DVU0059at 66.118 kb on + strand, within DVU0059at 66.120 kb on + strand, within DVU0059at 66.120 kb on + strand, within DVU0059at 66.128 kb on - strand, within DVU0059at 66.128 kb on - strand, within DVU0059at 66.128 kb on - strand, within DVU0059at 66.167 kb on - strand, within DVU0059at 66.230 kb on + strand, within DVU0059at 66.241 kb on + strand, within DVU0059at 66.243 kb on - strand, within DVU0059at 66.297 kb on - strand, within DVU0059at 66.351 kb on - strand, within DVU0059at 66.437 kb on + strand, within DVU0059at 66.445 kb on - strand, within DVU0059at 66.445 kb on - strand, within DVU0059at 66.471 kb on + strand, within DVU0059at 66.479 kb on - strand, within DVU0059at 66.515 kb on + strand, within DVU0059at 66.621 kb on + strand, within DVU0059

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
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63,537 + +1.6
63,538 - -0.6
63,545 - -0.3
63,579 + -0.5
63,741 + -0.3
63,824 + -0.4
63,824 + +0.2
63,831 - +1.0
64,007 + DVU0057 0.18 -1.9
64,077 + DVU0057 0.29 +2.0
64,150 + DVU0057 0.41 +0.5
64,229 + DVU0057 0.53 -0.0
64,229 + DVU0057 0.53 +0.3
64,229 + DVU0057 0.53 +0.5
64,299 - DVU0057 0.64 -0.0
64,345 + DVU0057 0.71 +0.4
64,348 - DVU0057 0.71 +0.2
64,414 + DVU0057 0.82 +0.4
64,416 + DVU0057 0.82 -0.1
64,416 + DVU0057 0.82 +0.4
64,421 + DVU0057 0.83 +1.0
64,421 + DVU0057 0.83 +1.4
64,590 - -0.5
64,600 - -1.6
64,600 - -1.2
64,648 - DVU0058 0.11 -0.1
64,649 + DVU0058 0.11 -0.9
64,675 + DVU0058 0.13 -0.7
64,675 + DVU0058 0.13 +0.1
64,675 + DVU0058 0.13 -0.7
64,683 - DVU0058 0.14 -0.0
64,689 + DVU0058 0.14 -0.5
64,702 - DVU0058 0.15 +0.1
64,743 + DVU0058 0.19 -0.9
64,819 - DVU0058 0.25 -1.2
64,860 - DVU0058 0.29 -1.1
64,884 + DVU0058 0.31 -0.6
64,907 + DVU0058 0.33 -0.7
64,915 - DVU0058 0.34 -0.9
64,917 + DVU0058 0.34 -0.6
64,925 - DVU0058 0.35 +1.1
64,952 + DVU0058 0.37 -0.9
64,999 - DVU0058 0.41 -1.1
65,050 - DVU0058 0.45 -0.9
65,073 + DVU0058 0.47 -0.8
65,073 + DVU0058 0.47 -0.6
65,073 + DVU0058 0.47 -1.0
65,115 + DVU0058 0.51 -0.3
65,116 - DVU0058 0.51 -0.7
65,151 - DVU0058 0.54 +1.8
65,177 + DVU0058 0.56 -0.9
65,185 - DVU0058 0.57 -1.0
65,185 - DVU0058 0.57 -0.6
65,185 - DVU0058 0.57 -0.9
65,210 + DVU0058 0.59 -1.5
65,210 + DVU0058 0.59 -1.2
65,210 + DVU0058 0.59 -0.7
65,210 + DVU0058 0.59 +3.6
65,218 - DVU0058 0.60 -0.1
65,235 + DVU0058 0.61 -1.0
65,246 + DVU0058 0.62 -0.6
65,255 - DVU0058 0.63 -1.2
65,257 + DVU0058 0.63 -0.9
65,461 + DVU0058 0.81 -0.9
65,469 + DVU0058 0.82 -0.4
65,540 - DVU0058 0.88 -0.2
65,589 - +0.0
65,594 - -0.7
65,621 - -0.9
65,744 - -1.0
65,782 + -2.5
65,782 + -0.2
65,782 + -0.4
65,782 + -0.8
65,790 - -1.1
65,790 - -0.6
65,798 - +0.7
65,818 + -0.7
65,876 - +0.3
65,946 - -1.3
65,953 + -1.1
66,014 - -0.9
66,019 + +2.6
66,022 - -0.9
66,024 + -1.0
66,024 + -1.2
66,081 + DVU0059 0.11 -1.9
66,118 + DVU0059 0.12 -0.1
66,120 + DVU0059 0.12 +0.3
66,120 + DVU0059 0.12 -0.7
66,128 - DVU0059 0.12 +1.4
66,128 - DVU0059 0.12 -0.9
66,128 - DVU0059 0.12 -0.8
66,167 - DVU0059 0.13 -1.0
66,230 + DVU0059 0.15 +1.3
66,241 + DVU0059 0.15 +0.4
66,243 - DVU0059 0.15 -0.3
66,297 - DVU0059 0.17 +1.4
66,351 - DVU0059 0.18 -1.0
66,437 + DVU0059 0.21 -0.8
66,445 - DVU0059 0.21 -0.9
66,445 - DVU0059 0.21 -0.8
66,471 + DVU0059 0.21 -0.7
66,479 - DVU0059 0.22 +0.1
66,515 + DVU0059 0.23 -0.8
66,621 + DVU0059 0.25 +0.2

Or see this region's nucleotide sequence