Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3382

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
3,554,785	-	ntrC	DVU3381	0.32	-0.3
3,554,824	+	ntrC	DVU3381	0.34	+0.0
3,554,832	-	ntrC	DVU3381	0.35	+0.4
3,554,876	-	ntrC	DVU3381	0.38	+0.4
3,554,944	+	ntrC	DVU3381	0.43	-0.4
3,554,963	+	ntrC	DVU3381	0.44	+0.1
3,554,971	-	ntrC	DVU3381	0.45	+1.6
3,554,985	-	ntrC	DVU3381	0.46	+2.6
3,555,008	-	ntrC	DVU3381	0.48	+1.0
3,555,018	-	ntrC	DVU3381	0.48	+0.2
3,555,028	-	ntrC	DVU3381	0.49	-0.0
3,555,064	+	ntrC	DVU3381	0.52	-0.0
3,555,064	+	ntrC	DVU3381	0.52	+0.6
3,555,072	-	ntrC	DVU3381	0.52	+0.2
3,555,083	+	ntrC	DVU3381	0.53	+1.6
3,555,083	+	ntrC	DVU3381	0.53	-0.2
3,555,096	-	ntrC	DVU3381	0.54	+0.1
3,555,100	+	ntrC	DVU3381	0.54	+0.3
3,555,100	+	ntrC	DVU3381	0.54	+1.4
3,555,120	+	ntrC	DVU3381	0.56	+0.2
3,555,120	+	ntrC	DVU3381	0.56	-1.0
3,555,120	+	ntrC	DVU3381	0.56	-1.5
3,555,125	+	ntrC	DVU3381	0.56	+0.1
3,555,128	-	ntrC	DVU3381	0.56	-0.9
3,555,128	-	ntrC	DVU3381	0.56	+0.2
3,555,200	-	ntrC	DVU3381	0.62	+0.8
3,555,203	+	ntrC	DVU3381	0.62	-0.2
3,555,203	+	ntrC	DVU3381	0.62	-0.1
3,555,211	-	ntrC	DVU3381	0.62	+0.0
3,555,213	+	ntrC	DVU3381	0.63	-0.0
3,555,267	-	ntrC	DVU3381	0.66	-0.2
3,555,270	+	ntrC	DVU3381	0.67	-0.2
3,555,285	-	ntrC	DVU3381	0.68	-0.9
3,555,377	-	ntrC	DVU3381	0.74	-0.7
3,555,387	+	ntrC	DVU3381	0.75	-0.6
3,555,399	+	ntrC	DVU3381	0.76	-0.1
3,555,410	-	ntrC	DVU3381	0.77	-0.2
3,555,424	-	ntrC	DVU3381	0.78	+0.3
3,555,430	+	ntrC	DVU3381	0.78	+0.0
3,555,438	-	ntrC	DVU3381	0.79	+0.2
3,555,454	+	ntrC	DVU3381	0.80	-0.3
3,555,462	-	ntrC	DVU3381	0.81	-0.1
3,555,463	+	ntrC	DVU3381	0.81	+0.2
3,555,468	+	ntrC	DVU3381	0.81	-0.9
3,555,483	-	ntrC	DVU3381	0.82	-0.0
3,555,483	-	ntrC	DVU3381	0.82	+0.0
3,555,493	-	ntrC	DVU3381	0.83	-0.7
3,555,507	-	ntrC	DVU3381	0.84	+3.6
3,555,511	+	ntrC	DVU3381	0.84	-0.0
3,555,517	-	ntrC	DVU3381	0.85	-0.9
3,555,517	-	ntrC	DVU3381	0.85	+2.6
3,555,537	+	ntrC	DVU3381	0.86	+0.8
3,555,567	+	ntrC	DVU3381	0.88	+0.7
3,555,569	+	ntrC	DVU3381	0.88	-0.2
3,555,569	+	ntrC	DVU3381	0.88	-0.6
3,555,569	+	ntrC	DVU3381	0.88	+0.6
3,555,577	-	ntrC	DVU3381	0.89	-0.1
3,555,671	-				+0.1
3,555,733	+				-0.5
3,555,746	-				+0.2
3,555,754	+				-0.0
3,555,797	+				+0.1
3,555,802	+				-0.3
3,555,805	-				-1.9
3,555,845	+				-0.2
3,555,853	-				-1.7
3,555,862	+				-1.0
3,555,869	+				-0.5
3,555,870	-				-1.2
3,555,874	+				-0.8
3,555,919	+				-0.8
3,555,925	-				+0.1
3,555,961	-	zraS	DVU3382	0.11	-0.6
3,556,030	+	zraS	DVU3382	0.15	-0.6
3,556,030	+	zraS	DVU3382	0.15	-1.1
3,556,087	+	zraS	DVU3382	0.17	-0.8
3,556,164	+	zraS	DVU3382	0.21	-1.1
3,556,267	-	zraS	DVU3382	0.26	-0.5
3,556,324	+	zraS	DVU3382	0.29	-0.9
3,556,332	-	zraS	DVU3382	0.29	-1.0
3,556,332	-	zraS	DVU3382	0.29	-1.1
3,556,352	-	zraS	DVU3382	0.30	+0.3
3,556,394	+	zraS	DVU3382	0.33	-1.2
3,556,396	+	zraS	DVU3382	0.33	-0.4
3,556,402	-	zraS	DVU3382	0.33	-1.3
3,556,402	-	zraS	DVU3382	0.33	-0.9
3,556,415	+	zraS	DVU3382	0.34	-1.1
3,556,425	+	zraS	DVU3382	0.34	-1.3
3,556,425	+	zraS	DVU3382	0.34	-1.0
3,556,430	+	zraS	DVU3382	0.34	+1.1
3,556,573	-	zraS	DVU3382	0.41	-0.4
3,556,578	+	zraS	DVU3382	0.42	-1.0
3,556,619	+	zraS	DVU3382	0.44	-1.1
3,556,621	+	zraS	DVU3382	0.44	+0.3
3,556,675	-	zraS	DVU3382	0.46	-1.8
3,556,734	+	zraS	DVU3382	0.49	-0.9
3,556,738	+	zraS	DVU3382	0.49	-0.6
3,556,785	+	zraS	DVU3382	0.52	-0.4
3,556,785	+	zraS	DVU3382	0.52	-1.0
3,556,848	-	zraS	DVU3382	0.55	-1.0
3,556,850	-	zraS	DVU3382	0.55	-0.7
3,556,884	-	zraS	DVU3382	0.57	-1.4
3,556,889	-	zraS	DVU3382	0.57	+0.6
3,556,900	+	zraS	DVU3382	0.57	-0.3
3,556,961	-	zraS	DVU3382	0.60	-0.5
3,556,972	+	zraS	DVU3382	0.61	-1.3
3,556,972	+	zraS	DVU3382	0.61	-0.5
3,556,980	-	zraS	DVU3382	0.61	-0.0
3,556,980	-	zraS	DVU3382	0.61	-0.7
3,557,092	-	zraS	DVU3382	0.67	-0.0
3,557,110	-	zraS	DVU3382	0.68	-0.6
3,557,209	-	zraS	DVU3382	0.72	-0.4
3,557,260	-	zraS	DVU3382	0.75	-0.8
3,557,277	-	zraS	DVU3382	0.76	-1.0
3,557,292	+	zraS	DVU3382	0.77	-1.1
3,557,300	-	zraS	DVU3382	0.77	+0.1
3,557,329	+	zraS	DVU3382	0.78	-0.7
3,557,363	+	zraS	DVU3382	0.80	-1.2
3,557,368	+	zraS	DVU3382	0.80	-0.7
3,557,371	-	zraS	DVU3382	0.80	-0.4
3,557,391	-	zraS	DVU3382	0.81	-1.0
3,557,410	-	zraS	DVU3382	0.82	-0.6
3,557,418	+	zraS	DVU3382	0.83	+0.3
3,557,421	-	zraS	DVU3382	0.83	-0.3
3,557,423	+	zraS	DVU3382	0.83	+0.9
3,557,423	+	zraS	DVU3382	0.83	-1.1
3,557,426	-	zraS	DVU3382	0.83	+1.5
3,557,426	-	zraS	DVU3382	0.83	-0.4
3,557,428	+	zraS	DVU3382	0.83	-0.6
3,557,444	+	zraS	DVU3382	0.84	-0.8
3,557,482	+	zraS	DVU3382	0.86	-1.3
3,557,548	+	zraS	DVU3382	0.89	-0.4
3,557,556	-	zraS	DVU3382	0.89	-1.1
3,557,597	+				-0.6
3,557,605	-				-0.7
3,557,605	-				+0.3
3,557,757	+				-1.1
3,557,814	+				+0.1
3,557,864	+				-0.6
3,557,964	+				+1.2
3,557,972	-				+0.6
3,558,024	-				-0.6
3,558,106	+				+0.2
3,558,111	+				-0.4
3,558,119	-				+1.0
3,558,153	+				-1.7
3,558,153	+				-0.1
3,558,153	+				+1.6
3,558,153	+				-0.0
3,558,153	+				-0.3
3,558,161	-				+0.3
3,558,161	-				+0.3
3,558,277	-				+0.6
3,558,287	-				+0.1
3,558,325	-				-0.9
3,558,330	+				+0.8
3,558,355	-				+0.3
3,558,359	+				-0.1
3,558,425	+	zraP	DVU3384	0.12	+1.0
3,558,467	+	zraP	DVU3384	0.20	+0.6
3,558,468	+	zraP	DVU3384	0.20	-0.2
3,558,486	-	zraP	DVU3384	0.24	-1.5
3,558,490	+	zraP	DVU3384	0.25	+0.3
3,558,493	-	zraP	DVU3384	0.25	-0.6
3,558,498	-	zraP	DVU3384	0.26	-0.6
3,558,498	-	zraP	DVU3384	0.26	+1.0
3,558,500	+	zraP	DVU3384	0.26	-0.1
3,558,524	+	zraP	DVU3384	0.31	-0.1
3,558,542	-	zraP	DVU3384	0.34	+0.1
3,558,553	+	zraP	DVU3384	0.37	-1.0
3,558,580	+	zraP	DVU3384	0.42	-0.0
3,558,580	+	zraP	DVU3384	0.42	+1.3
3,558,588	-	zraP	DVU3384	0.43	-0.9
3,558,611	+	zraP	DVU3384	0.48	-0.0
3,558,622	+	zraP	DVU3384	0.50	-0.9
3,558,630	-	zraP	DVU3384	0.51	-1.4
3,558,634	+	zraP	DVU3384	0.52	+0.2
3,558,642	-	zraP	DVU3384	0.54	-0.7
3,558,664	+	zraP	DVU3384	0.58	-0.9
3,558,685	+	zraP	DVU3384	0.62	+0.7
3,558,688	-	zraP	DVU3384	0.62	-0.2
3,558,764	-	zraP	DVU3384	0.77	-1.0
3,558,764	-	zraP	DVU3384	0.77	+0.6