Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3052

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
3,175,899	-		DVU3050	0.13	-0.6
3,175,924	-		DVU3050	0.19	-0.0
3,175,980	-		DVU3050	0.32	-0.2
3,175,995	-		DVU3050	0.35	-0.2
3,176,234	-				-1.0
3,176,425	-				-0.4
3,176,459	-				-0.6
3,176,466	-				-0.8
3,176,494	-				+1.8
3,176,588	+	mutT	DVU3051	0.23	-0.4
3,176,596	-	mutT	DVU3051	0.25	+0.3
3,176,617	+	mutT	DVU3051	0.31	-0.3
3,176,713	+	mutT	DVU3051	0.55	-0.0
3,176,731	+	mutT	DVU3051	0.60	-0.1
3,176,764	-	mutT	DVU3051	0.68	-0.0
3,176,813	+	mutT	DVU3051	0.81	+0.3
3,176,828	-	mutT	DVU3051	0.85	+0.2
3,176,897	+				-0.0
3,176,923	+				-0.8
3,176,951	-				-0.7
3,176,981	-				+0.9
3,177,021	+				-0.6
3,177,068	+				+0.6
3,177,076	-				-2.8
3,177,076	-				-1.4
3,177,112	-		DVU3052	0.11	-2.5
3,177,115	+		DVU3052	0.12	-0.5
3,177,179	+		DVU3052	0.15	+0.8
3,177,179	+		DVU3052	0.15	-0.9
3,177,218	+		DVU3052	0.17	-0.9
3,177,291	-		DVU3052	0.20	-1.3
3,177,410	-		DVU3052	0.26	-0.3
3,177,415	-		DVU3052	0.27	-0.5
3,177,593	-		DVU3052	0.36	+1.4
3,177,624	+		DVU3052	0.37	-0.3
3,177,647	-		DVU3052	0.38	-1.1
3,177,651	+		DVU3052	0.39	-0.7
3,177,651	+		DVU3052	0.39	+0.1
3,177,660	+		DVU3052	0.39	-1.3
3,177,668	-		DVU3052	0.39	-1.1
3,177,680	+		DVU3052	0.40	+0.1
3,177,764	+		DVU3052	0.44	-0.5
3,177,955	-		DVU3052	0.54	+1.3
3,178,026	+		DVU3052	0.58	-1.4
3,178,054	-		DVU3052	0.59	-0.1
3,178,121	+		DVU3052	0.62	-1.0
3,178,131	+		DVU3052	0.63	+0.1
3,178,135	-		DVU3052	0.63	-0.8
3,178,205	+		DVU3052	0.67	-1.0
3,178,242	-		DVU3052	0.68	-0.8
3,178,257	-		DVU3052	0.69	-0.4
3,178,261	+		DVU3052	0.69	-0.5
3,178,269	-		DVU3052	0.70	-2.3
3,178,269	-		DVU3052	0.70	-1.9
3,178,484	-		DVU3052	0.81	+0.0
3,178,484	-		DVU3052	0.81	-0.8
3,178,492	-		DVU3052	0.81	-0.8
3,178,499	+		DVU3052	0.81	-0.7
3,178,500	+		DVU3052	0.81	-0.2
3,178,523	-		DVU3052	0.83	-1.0
3,178,533	-		DVU3052	0.83	-1.1
3,178,570	-		DVU3052	0.85	-0.6
3,178,658	+		DVU3052	0.89	-0.7
3,178,684	-				-0.7
3,178,735	-				+0.1
3,178,763	-				-1.0
3,178,782	+				+1.5
3,178,861	+				-0.2
3,178,861	+				-1.6
3,178,861	+				-0.6
3,178,861	+				+0.2
3,178,868	+				-2.1
3,178,868	+				-0.2
3,178,876	-				-0.7
3,178,876	-				+1.7
3,178,876	-				-0.3
3,178,942	-				-0.4
3,178,980	+				-0.6
3,178,988	-				+1.3
3,179,005	+				-0.3
3,179,049	-				-0.1
3,179,081	-				-0.9
3,179,351	-		DVU3053	0.28	+2.6
3,179,435	+		DVU3053	0.37	-0.6
3,179,477	-		DVU3053	0.42	-1.1
3,179,499	-		DVU3053	0.45	+0.3
3,179,554	-		DVU3053	0.51	+0.6
3,179,575	+		DVU3053	0.53	-0.2
3,179,579	+		DVU3053	0.53	-0.8
3,179,616	+		DVU3053	0.58	-0.9
3,179,622	-		DVU3053	0.58	+0.8
3,179,624	-		DVU3053	0.59	-0.4
3,179,659	-		DVU3053	0.62	-0.3
3,179,659	-		DVU3053	0.62	+0.2
3,179,728	-		DVU3053	0.70	-0.6
3,179,743	-		DVU3053	0.72	-0.7
3,179,751	+		DVU3053	0.73	+0.3
3,179,797	+		DVU3053	0.78	-0.3
3,179,835	+		DVU3053	0.82	-0.6