Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1425

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
1,498,361	-	gcvPB	DVU1424	0.31	-1.4
1,498,425	-	gcvPB	DVU1424	0.35	-0.9
1,498,491	-	gcvPB	DVU1424	0.40	-0.0
1,498,507	+	gcvPB	DVU1424	0.41	-1.1
1,498,510	-	gcvPB	DVU1424	0.41	-0.2
1,498,538	+	gcvPB	DVU1424	0.43	-1.0
1,498,565	-	gcvPB	DVU1424	0.45	-1.2
1,498,571	+	gcvPB	DVU1424	0.45	-1.0
1,498,631	-	gcvPB	DVU1424	0.49	-0.1
1,498,657	-	gcvPB	DVU1424	0.51	-1.6
1,498,708	+	gcvPB	DVU1424	0.55	+1.7
1,498,727	+	gcvPB	DVU1424	0.56	-1.4
1,498,738	-	gcvPB	DVU1424	0.57	-0.8
1,498,757	+	gcvPB	DVU1424	0.58	-0.4
1,498,772	-	gcvPB	DVU1424	0.59	-2.6
1,498,886	-	gcvPB	DVU1424	0.67	-1.1
1,498,904	-	gcvPB	DVU1424	0.68	-0.6
1,498,904	-	gcvPB	DVU1424	0.68	-0.1
1,498,904	-	gcvPB	DVU1424	0.68	-0.9
1,498,969	+	gcvPB	DVU1424	0.73	+2.0
1,499,034	-	gcvPB	DVU1424	0.77	-0.2
1,499,040	+	gcvPB	DVU1424	0.78	-0.8
1,499,058	+	gcvPB	DVU1424	0.79	-0.9
1,499,058	+	gcvPB	DVU1424	0.79	+0.3
1,499,058	+	gcvPB	DVU1424	0.79	-2.0
1,499,058	+	gcvPB	DVU1424	0.79	-1.0
1,499,058	+	gcvPB	DVU1424	0.79	-0.1
1,499,058	+	gcvPB	DVU1424	0.79	-0.4
1,499,058	+	gcvPB	DVU1424	0.79	+0.3
1,499,058	+	gcvPB	DVU1424	0.79	-0.4
1,499,058	+	gcvPB	DVU1424	0.79	+0.5
1,499,058	+	gcvPB	DVU1424	0.79	-0.9
1,499,066	-	gcvPB	DVU1424	0.79	-0.8
1,499,066	-	gcvPB	DVU1424	0.79	-1.3
1,499,066	-	gcvPB	DVU1424	0.79	+0.5
1,499,066	-	gcvPB	DVU1424	0.79	-0.7
1,499,066	-	gcvPB	DVU1424	0.79	-0.8
1,499,066	-	gcvPB	DVU1424	0.79	-0.2
1,499,066	-	gcvPB	DVU1424	0.79	+0.5
1,499,066	-	gcvPB	DVU1424	0.79	-0.8
1,499,261	-				-0.9
1,499,269	-				+1.0
1,499,315	-				-0.4
1,499,398	-				-0.6
1,499,428	-				-1.4
1,499,506	+	gcvPA	DVU1425	0.11	-1.3
1,499,514	-	gcvPA	DVU1425	0.12	-1.1
1,499,514	-	gcvPA	DVU1425	0.12	-1.1
1,499,569	+	gcvPA	DVU1425	0.16	-1.0
1,499,585	-	gcvPA	DVU1425	0.17	-1.3
1,499,595	-	gcvPA	DVU1425	0.18	-1.0
1,499,635	+	gcvPA	DVU1425	0.21	-0.0
1,499,666	-	gcvPA	DVU1425	0.23	-1.4
1,499,707	+	gcvPA	DVU1425	0.26	-1.0
1,499,712	+	gcvPA	DVU1425	0.27	-1.3
1,499,778	+	gcvPA	DVU1425	0.31	+0.2
1,499,798	+	gcvPA	DVU1425	0.33	-0.5
1,500,030	+	gcvPA	DVU1425	0.50	-0.6
1,500,078	-	gcvPA	DVU1425	0.54	-0.9
1,500,265	+	gcvPA	DVU1425	0.68	+0.9
1,500,327	-	gcvPA	DVU1425	0.73	-1.1
1,500,345	-	gcvPA	DVU1425	0.74	-1.2
1,500,379	-	gcvPA	DVU1425	0.77	-0.9
1,500,394	-	gcvPA	DVU1425	0.78	-0.8
1,500,394	-	gcvPA	DVU1425	0.78	-0.9
1,500,404	-	gcvPA	DVU1425	0.78	-0.8
1,500,413	+	gcvPA	DVU1425	0.79	-1.0
1,500,413	+	gcvPA	DVU1425	0.79	+0.1
1,500,413	+	gcvPA	DVU1425	0.79	+1.2
1,500,413	+	gcvPA	DVU1425	0.79	-1.1
1,500,415	+	gcvPA	DVU1425	0.79	-0.9
1,500,415	+	gcvPA	DVU1425	0.79	-0.6
1,500,421	-	gcvPA	DVU1425	0.80	-0.6
1,500,421	-	gcvPA	DVU1425	0.80	-0.9
1,500,421	-	gcvPA	DVU1425	0.80	+0.3
1,500,421	-	gcvPA	DVU1425	0.80	-0.5
1,500,449	+	gcvPA	DVU1425	0.82	-0.3
1,500,457	-	gcvPA	DVU1425	0.82	-1.1
1,500,457	-	gcvPA	DVU1425	0.82	-1.2
1,500,493	+	gcvPA	DVU1425	0.85	-0.6
1,500,560	+				-1.0
1,500,560	+				-0.6
1,500,560	+				+0.3
1,500,568	-				-0.6
1,500,568	-				-0.8
1,500,578	+				+0.7
1,500,592	-				-0.3
1,500,651	-				-0.9
1,500,685	+				-0.9
1,500,685	+				-0.7
1,500,693	-				-0.6
1,500,766	-	gcvH	DVU1426	0.16	-1.1
1,500,788	+	gcvH	DVU1426	0.22	+0.8
1,500,797	+	gcvH	DVU1426	0.24	+1.2
1,500,802	+	gcvH	DVU1426	0.25	-0.4
1,500,814	+	gcvH	DVU1426	0.28	-0.3
1,500,918	+	gcvH	DVU1426	0.55	-0.0
1,500,943	-	gcvH	DVU1426	0.62	-1.5
1,500,962	+	gcvH	DVU1426	0.67	-0.4
1,501,091	-				+0.8
1,501,096	+				+0.0
1,501,099	+				-0.9
1,501,102	-				-1.0
1,501,148	-				-1.3
1,501,250	-				-0.0
1,501,254	+				-0.1