Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19945

Experiment: mouse 3; day 1; diet=StandardDiet; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mouse 3; day 1; diet=StandardDiet; sample=FecalPellet
2,274,790	-		BBR_RS19940	0.56	-0.8
2,274,790	-		BBR_RS19940	0.56	-0.5
2,274,808	-		BBR_RS19940	0.57	+0.9
2,274,818	+		BBR_RS19940	0.58	+1.3
2,274,818	+		BBR_RS19940	0.58	+1.2
2,274,826	-		BBR_RS19940	0.58	-0.1
2,274,827	-		BBR_RS19940	0.58	+0.2
2,274,832	-		BBR_RS19940	0.59	-0.2
2,274,837	-		BBR_RS19940	0.59	+0.1
2,274,841	-		BBR_RS19940	0.59	-0.9
2,274,841	-		BBR_RS19940	0.59	+0.9
2,274,845	+		BBR_RS19940	0.59	+1.8
2,274,845	+		BBR_RS19940	0.59	+1.7
2,274,845	+		BBR_RS19940	0.59	-0.1
2,274,845	+		BBR_RS19940	0.59	+1.1
2,274,845	+		BBR_RS19940	0.59	+0.5
2,274,845	+		BBR_RS19940	0.59	-1.5
2,274,845	+		BBR_RS19940	0.59	+0.6
2,274,845	+		BBR_RS19940	0.59	+1.7
2,274,853	-		BBR_RS19940	0.60	-0.3
2,274,853	-		BBR_RS19940	0.60	-1.2
2,274,853	-		BBR_RS19940	0.60	-0.9
2,274,853	-		BBR_RS19940	0.60	+1.4
2,274,853	-		BBR_RS19940	0.60	-1.2
2,274,853	-		BBR_RS19940	0.60	+1.1
2,274,853	-		BBR_RS19940	0.60	+0.5
2,274,863	-		BBR_RS19940	0.60	-3.1
2,274,865	+		BBR_RS19940	0.60	-0.3
2,274,865	+		BBR_RS19940	0.60	-1.3
2,274,873	-		BBR_RS19940	0.61	-4.0
2,274,895	-		BBR_RS19940	0.62	+1.2
2,274,904	+		BBR_RS19940	0.62	-1.5
2,274,904	+		BBR_RS19940	0.62	+0.4
2,274,904	+		BBR_RS19940	0.62	-0.9
2,274,912	-		BBR_RS19940	0.63	-0.5
2,274,912	-		BBR_RS19940	0.63	+0.1
2,274,921	+		BBR_RS19940	0.63	-0.9
2,274,956	+		BBR_RS19940	0.65	+2.8
2,274,958	+		BBR_RS19940	0.65	-1.6
2,274,990	+		BBR_RS19940	0.67	+0.2
2,274,990	+		BBR_RS19940	0.67	+0.2
2,275,005	-		BBR_RS19940	0.68	+0.8
2,275,021	+		BBR_RS19940	0.69	-0.9
2,275,029	-		BBR_RS19940	0.69	+1.5
2,275,029	-		BBR_RS19940	0.69	-0.5
2,275,029	-		BBR_RS19940	0.69	-0.4
2,275,040	+		BBR_RS19940	0.70	+0.9
2,275,051	+		BBR_RS19940	0.70	-0.0
2,275,051	+		BBR_RS19940	0.70	+0.4
2,275,051	+		BBR_RS19940	0.70	+0.0
2,275,051	+		BBR_RS19940	0.70	+0.9
2,275,051	+		BBR_RS19940	0.70	-0.2
2,275,051	+		BBR_RS19940	0.70	+0.7
2,275,051	+		BBR_RS19940	0.70	-0.7
2,275,059	-		BBR_RS19940	0.71	-0.2
2,275,059	-		BBR_RS19940	0.71	+0.6
2,275,059	-		BBR_RS19940	0.71	-3.1
2,275,059	-		BBR_RS19940	0.71	+1.3
2,275,059	-		BBR_RS19940	0.71	+0.5
2,275,059	-		BBR_RS19940	0.71	+0.2
2,275,059	-		BBR_RS19940	0.71	+1.6
2,275,059	-		BBR_RS19940	0.71	+0.7
2,275,059	-		BBR_RS19940	0.71	+1.0
2,275,059	-		BBR_RS19940	0.71	-0.9
2,275,059	-		BBR_RS19940	0.71	-0.3
2,275,059	-		BBR_RS19940	0.71	+1.0
2,275,059	-		BBR_RS19940	0.71	-0.1
2,275,059	-		BBR_RS19940	0.71	-0.0
2,275,059	-		BBR_RS19940	0.71	+0.1
2,275,063	+		BBR_RS19940	0.71	-1.4
2,275,070	-		BBR_RS19940	0.71	+0.3
2,275,075	+		BBR_RS19940	0.72	-0.1
2,275,083	+		BBR_RS19940	0.72	+0.5
2,275,091	-		BBR_RS19940	0.72	+0.1
2,275,098	+		BBR_RS19940	0.73	-2.7
2,275,098	-		BBR_RS19940	0.73	-1.0
2,275,104	+		BBR_RS19940	0.73	-3.7
2,275,115	+		BBR_RS19940	0.74	-0.9
2,275,115	+		BBR_RS19940	0.74	-0.2
2,275,120	+		BBR_RS19940	0.74	-0.2
2,275,135	+		BBR_RS19940	0.75	+0.2
2,275,138	-		BBR_RS19940	0.75	-1.3
2,275,156	+		BBR_RS19940	0.76	+1.3
2,275,166	-		BBR_RS19940	0.77	+0.5
2,275,166	-		BBR_RS19940	0.77	-2.6
2,275,168	+		BBR_RS19940	0.77	+0.9
2,275,168	+		BBR_RS19940	0.77	+0.5
2,275,176	-		BBR_RS19940	0.77	-0.2
2,275,185	-		BBR_RS19940	0.78	-0.4
2,275,185	-		BBR_RS19940	0.78	-0.4
2,275,203	+		BBR_RS19940	0.78	-2.9
2,275,203	+		BBR_RS19940	0.78	-0.2
2,275,203	+		BBR_RS19940	0.78	-0.8
2,275,210	+		BBR_RS19940	0.79	+1.3
2,275,210	-		BBR_RS19940	0.79	-0.9
2,275,211	-		BBR_RS19940	0.79	+0.6
2,275,211	-		BBR_RS19940	0.79	+0.3
2,275,224	-		BBR_RS19940	0.80	+0.3
2,275,244	+		BBR_RS19940	0.81	-0.2
2,275,244	+		BBR_RS19940	0.81	-1.8
2,275,250	-		BBR_RS19940	0.81	+0.3
2,275,298	+		BBR_RS19940	0.84	+1.3
2,275,305	+		BBR_RS19940	0.84	+0.1
2,275,305	+		BBR_RS19940	0.84	+1.0
2,275,313	-		BBR_RS19940	0.84	+1.3
2,275,343	+		BBR_RS19940	0.86	-0.7
2,275,343	+		BBR_RS19940	0.86	+2.0
2,275,350	+		BBR_RS19940	0.86	+1.3
2,275,357	-		BBR_RS19940	0.87	-0.1
2,275,358	-		BBR_RS19940	0.87	-0.9
2,275,388	-		BBR_RS19940	0.88	+0.3
2,275,402	+		BBR_RS19940	0.89	-3.5
2,275,405	-		BBR_RS19940	0.89	-0.1
2,275,405	-		BBR_RS19940	0.89	+0.1
2,275,438	+				+0.2
2,275,438	+				+1.4
2,275,441	-				+0.5
2,275,446	-				+0.3
2,275,451	+				-0.5
2,275,451	+				-1.2
2,275,459	-				+0.1
2,275,478	+				-1.1
2,275,486	-				+0.1
2,275,486	-				-3.8
2,275,487	+				-1.3
2,275,516	-				+1.5
2,275,534	+				+0.6
2,275,534	+				-1.0
2,275,542	+				-0.1
2,275,542	+				-2.6
2,275,542	+				+0.6
2,275,550	-				+1.9
2,275,556	+				+0.8
2,275,574	-				-0.4
2,275,651	+				-0.3
2,275,776	-				-1.0
2,275,786	+				+0.9
2,275,786	+				+0.2
2,275,811	+				-0.8
2,275,823	-				-0.0
2,275,823	-				-0.8
2,275,830	-				-0.2
2,275,836	-				+0.6
2,275,836	-				+0.3
2,275,865	-		BBR_RS19945	0.15	-0.5
2,275,867	+		BBR_RS19945	0.15	-0.8
2,275,891	-		BBR_RS19945	0.20	-0.4
2,275,891	-		BBR_RS19945	0.20	+0.4
2,275,962	-		BBR_RS19945	0.33	-0.9
2,275,971	+		BBR_RS19945	0.35	+1.3
2,276,004	+		BBR_RS19945	0.41	-2.1
2,276,012	-		BBR_RS19945	0.43	-0.4
2,276,023	-		BBR_RS19945	0.45	-2.6
2,276,026	-		BBR_RS19945	0.46	-3.5
2,276,039	+		BBR_RS19945	0.48	-1.7
2,276,089	-		BBR_RS19945	0.58	+0.3
2,276,094	-		BBR_RS19945	0.59	-3.1
2,276,138	-		BBR_RS19945	0.67	-4.3
2,276,138	-		BBR_RS19945	0.67	+0.2
2,276,138	-		BBR_RS19945	0.67	-1.9
2,276,138	-		BBR_RS19945	0.67	-3.9
2,276,138	-		BBR_RS19945	0.67	-1.3
2,276,138	-		BBR_RS19945	0.67	-0.8
2,276,138	-		BBR_RS19945	0.67	-0.4
2,276,160	-		BBR_RS19945	0.71	-1.5
2,276,160	-		BBR_RS19945	0.71	-3.4
2,276,182	-		BBR_RS19945	0.75	-0.7
2,276,188	-		BBR_RS19945	0.77	-1.7
2,276,210	+		BBR_RS19945	0.81	-2.2
2,276,218	-		BBR_RS19945	0.82	-1.7
2,276,218	-		BBR_RS19945	0.82	-4.2
2,276,224	-		BBR_RS19945	0.84	-1.3
2,276,254	+		BBR_RS19945	0.89	-2.6
2,276,279	-				-0.8
2,276,335	+				-0.6
2,276,343	-				+0.4
2,276,343	-				+0.3
2,276,343	-				+0.7
2,276,350	+				+0.5
2,276,355	-				-0.2
2,276,358	-				+0.4
2,276,426	+				+0.6
2,276,428	+				+0.7
2,276,428	+				+0.7
2,276,428	+				+0.7
2,276,428	+				-0.6
2,276,436	-				+0.3
2,276,443	-				-0.0
2,276,515	+				+0.2
2,276,515	+				-0.5
2,276,521	-				+0.8
2,276,537	-				+0.3
2,276,555	+				+0.6
2,276,560	+				+0.7
2,276,560	+				-0.1
2,276,560	+				+0.0
2,276,563	-				+0.4
2,276,568	-				+0.7
2,276,577	-				+0.4
2,276,577	-				-0.7
2,276,577	-				+0.6
2,276,579	+				+0.3
2,276,587	-				+0.7
2,276,587	-				+0.1
2,276,587	-				+0.1
2,276,592	+				-1.2
2,276,627	+				+0.2
2,276,658	-				+1.4
2,276,661	+				+0.1
2,276,669	-				+1.0
2,276,714	+				+1.2
2,276,727	+				+1.2
2,276,727	+				+2.3
2,276,739	+				-2.9
2,276,747	-				-0.1
2,276,747	-				-1.2
2,276,749	-				-0.7
2,276,770	-				+0.3
2,276,770	-				+0.0
2,276,779	+				-2.6
2,276,824	+				-0.5
2,276,832	-				+1.0
2,276,839	-				-1.4
2,276,839	-				+1.4
2,276,846	-				-0.2
2,276,861	+				-0.0
2,276,861	+				+0.7
2,276,861	+				+0.5
2,276,864	-				-1.0
2,276,868	+				-0.8
2,276,869	-				+0.2
2,276,869	-				+0.1
2,276,869	-				-0.8
2,276,881	-				-0.4
2,276,885	+				+0.8
2,276,890	+				-0.6
2,276,890	+				+0.2
2,276,933	+				-3.9
2,276,945	+				+0.7
2,276,978	+		BBR_RS19950	0.12	+0.8
2,276,986	+		BBR_RS19950	0.13	-3.7
2,276,986	+		BBR_RS19950	0.13	-0.3
2,277,005	-		BBR_RS19950	0.17	+0.4
2,277,008	+		BBR_RS19950	0.18	+0.3
2,277,031	+		BBR_RS19950	0.22	-0.7
2,277,039	-		BBR_RS19950	0.23	-3.4
2,277,057	+		BBR_RS19950	0.27	-0.8
2,277,062	+		BBR_RS19950	0.28	+0.5
2,277,070	-		BBR_RS19950	0.29	+0.5
2,277,070	-		BBR_RS19950	0.29	-0.4
2,277,075	+		BBR_RS19950	0.30	-4.0
2,277,089	-		BBR_RS19950	0.33	+0.4
2,277,094	+		BBR_RS19950	0.34	+1.1
2,277,114	+		BBR_RS19950	0.38	+1.0
2,277,120	+		BBR_RS19950	0.39	-1.0
2,277,120	+		BBR_RS19950	0.39	-1.5
2,277,141	+		BBR_RS19950	0.43	+0.5
2,277,143	-		BBR_RS19950	0.43	+0.7
2,277,151	-		BBR_RS19950	0.45	+0.2
2,277,165	+		BBR_RS19950	0.47	-3.1
2,277,171	+		BBR_RS19950	0.48	+0.9
2,277,173	-		BBR_RS19950	0.49	+1.0
2,277,175	-		BBR_RS19950	0.49	+0.8
2,277,179	-		BBR_RS19950	0.50	+0.3
2,277,186	+		BBR_RS19950	0.51	-2.2
2,277,186	+		BBR_RS19950	0.51	+1.4
2,277,194	-		BBR_RS19950	0.53	+1.3
2,277,206	+		BBR_RS19950	0.55	-0.1
2,277,206	+		BBR_RS19950	0.55	-0.0
2,277,214	-		BBR_RS19950	0.57	+0.4
2,277,214	-		BBR_RS19950	0.57	+0.7
2,277,214	-		BBR_RS19950	0.57	+0.1
2,277,218	+		BBR_RS19950	0.57	+1.1
2,277,226	-		BBR_RS19950	0.59	+0.2
2,277,236	-		BBR_RS19950	0.61	+1.6
2,277,238	-		BBR_RS19950	0.61	-1.1
2,277,240	+		BBR_RS19950	0.62	+0.3
2,277,240	+		BBR_RS19950	0.62	-0.9
2,277,240	+		BBR_RS19950	0.62	+1.0
2,277,240	+		BBR_RS19950	0.62	-1.4
2,277,248	-		BBR_RS19950	0.63	-0.5
2,277,248	-		BBR_RS19950	0.63	+1.9
2,277,248	-		BBR_RS19950	0.63	+0.1
2,277,248	-		BBR_RS19950	0.63	+1.6
2,277,248	-		BBR_RS19950	0.63	+1.1
2,277,248	-		BBR_RS19950	0.63	+0.9
2,277,248	-		BBR_RS19950	0.63	+0.9
2,277,248	-		BBR_RS19950	0.63	+0.8
2,277,255	+		BBR_RS19950	0.64	-0.2
2,277,255	+		BBR_RS19950	0.64	+0.7
2,277,255	+		BBR_RS19950	0.64	+0.2
2,277,255	+		BBR_RS19950	0.64	-4.3
2,277,255	+		BBR_RS19950	0.64	-0.1
2,277,258	-		BBR_RS19950	0.65	+0.1
2,277,258	-		BBR_RS19950	0.65	+1.1
2,277,258	-		BBR_RS19950	0.65	+0.7
2,277,263	+		BBR_RS19950	0.66	-4.1
2,277,263	-		BBR_RS19950	0.66	+1.3
2,277,263	-		BBR_RS19950	0.66	+0.6
2,277,268	-		BBR_RS19950	0.67	+0.4
2,277,276	+		BBR_RS19950	0.68	-0.5
2,277,276	+		BBR_RS19950	0.68	-1.2
2,277,283	+		BBR_RS19950	0.70	-0.7
2,277,284	-		BBR_RS19950	0.70	+0.7
2,277,284	-		BBR_RS19950	0.70	-1.3