Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19270

Experiment: mouse 3; day 1; diet=StandardDiet; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mouse 3; day 1; diet=StandardDiet; sample=FecalPellet
2,100,343	-				-3.3
2,100,345	+				+1.4
2,100,353	-				-4.2
2,100,363	+				-3.3
2,100,373	+				+1.1
2,100,388	+				-2.2
2,100,388	+				-2.6
2,100,396	-				+0.0
2,100,398	+				-2.9
2,100,398	+				+0.8
2,100,398	+				-2.5
2,100,398	+				-1.8
2,100,398	+				+2.5
2,100,398	+				-1.9
2,100,406	-				+0.1
2,100,406	-				-3.2
2,100,406	-				-1.7
2,100,406	-				+1.0
2,100,406	-				-0.5
2,100,406	-				-1.1
2,100,406	-				-2.1
2,100,406	-				-0.8
2,100,406	-				-0.3
2,100,406	-				-2.2
2,100,411	-				-3.2
2,100,472	-				+0.8
2,100,473	-				-1.1
2,100,474	-				-0.4
2,100,507	-				+0.8
2,100,519	-				+1.2
2,100,519	-				-0.0
2,100,521	+				+0.5
2,100,521	+				-1.7
2,100,521	+				-0.6
2,100,526	-				+0.6
2,100,526	-				-0.6
2,100,529	-				-0.3
2,100,529	-				-1.2
2,100,538	+				+0.8
2,100,554	-				+0.1
2,100,554	-				+0.6
2,100,556	+				+0.5
2,100,573	-				+0.3
2,100,591	+				+0.9
2,100,599	-				+0.0
2,100,606	+				-0.1
2,100,609	-				+0.2
2,100,611	+				-4.0
2,100,623	+				-1.5
2,100,633	+				-3.8
2,100,641	-				+1.8
2,100,641	-				-0.9
2,100,651	-				-0.8
2,100,663	+				-0.6
2,100,663	+				-4.2
2,100,671	-				-4.0
2,100,671	-				-0.6
2,100,671	-				+0.6
2,100,711	+		BBR_RS19265	0.14	+0.4
2,100,719	-		BBR_RS19265	0.15	-1.0
2,100,719	-		BBR_RS19265	0.15	+0.6
2,100,738	-		BBR_RS19265	0.18	+0.7
2,100,743	-		BBR_RS19265	0.19	-0.7
2,100,743	-		BBR_RS19265	0.19	-2.5
2,100,764	+		BBR_RS19265	0.22	-0.9
2,100,775	+		BBR_RS19265	0.24	-1.5
2,100,778	+		BBR_RS19265	0.24	-0.7
2,100,786	-		BBR_RS19265	0.25	-0.3
2,100,789	+		BBR_RS19265	0.26	-0.5
2,100,804	+		BBR_RS19265	0.28	+1.5
2,100,811	+		BBR_RS19265	0.29	-1.2
2,100,829	-		BBR_RS19265	0.32	+0.0
2,100,845	+		BBR_RS19265	0.34	-0.5
2,100,846	-		BBR_RS19265	0.34	-2.1
2,100,846	-		BBR_RS19265	0.34	+0.0
2,100,846	-		BBR_RS19265	0.34	-0.3
2,100,852	-		BBR_RS19265	0.35	-0.7
2,100,859	+		BBR_RS19265	0.36	+0.9
2,100,975	+		BBR_RS19265	0.53	-0.3
2,100,975	+		BBR_RS19265	0.53	-2.0
2,100,983	-		BBR_RS19265	0.54	+1.6
2,101,023	-		BBR_RS19265	0.60	+0.6
2,101,036	-		BBR_RS19265	0.62	+0.4
2,101,036	-		BBR_RS19265	0.62	+0.6
2,101,036	-		BBR_RS19265	0.62	-3.2
2,101,042	+		BBR_RS19265	0.63	+0.5
2,101,049	+		BBR_RS19265	0.64	-0.5
2,101,050	-		BBR_RS19265	0.64	+0.3
2,101,050	-		BBR_RS19265	0.64	+0.3
2,101,055	-		BBR_RS19265	0.65	-0.4
2,101,068	-		BBR_RS19265	0.67	-0.6
2,101,087	+		BBR_RS19265	0.70	-1.4
2,101,095	-		BBR_RS19265	0.71	-4.6
2,101,095	-		BBR_RS19265	0.71	+0.9
2,101,097	+		BBR_RS19265	0.71	+0.6
2,101,101	-		BBR_RS19265	0.72	-2.2
2,101,105	-		BBR_RS19265	0.72	+1.1
2,101,105	-		BBR_RS19265	0.72	+1.0
2,101,133	-		BBR_RS19265	0.77	+0.7
2,101,135	+		BBR_RS19265	0.77	-0.4
2,101,146	+		BBR_RS19265	0.78	+1.0
2,101,147	+		BBR_RS19265	0.79	+0.8
2,101,150	-		BBR_RS19265	0.79	+0.4
2,101,155	-		BBR_RS19265	0.80	-0.8
2,101,160	-		BBR_RS19265	0.81	-1.5
2,101,164	-		BBR_RS19265	0.81	+0.1
2,101,164	-		BBR_RS19265	0.81	-0.1
2,101,186	+		BBR_RS19265	0.84	-0.4
2,101,186	+		BBR_RS19265	0.84	+0.2
2,101,188	+		BBR_RS19265	0.85	-2.4
2,101,188	-		BBR_RS19265	0.85	+0.3
2,101,196	-		BBR_RS19265	0.86	+0.1
2,101,196	-		BBR_RS19265	0.86	-1.2
2,101,208	+		BBR_RS19265	0.88	-0.3
2,101,209	+		BBR_RS19265	0.88	+0.5
2,101,209	+		BBR_RS19265	0.88	-0.6
2,101,240	-				+0.2
2,101,245	-				+0.1
2,101,253	-				-2.8
2,101,292	+				-1.3
2,101,300	+				-2.1
2,101,308	-				-3.9
2,101,318	+				+0.4
2,101,318	+				-2.4
2,101,318	+				-0.2
2,101,319	-				-0.6
2,101,319	-				+1.0
2,101,326	-				+0.2
2,101,326	-				+0.9
2,101,326	-				+0.8
2,101,326	-				-0.0
2,101,328	+				+0.9
2,101,328	+				+0.5
2,101,331	+				-3.3
2,101,331	-				-1.0
2,101,357	-				-1.3
2,101,372	-				+0.2
2,101,424	-		BBR_RS19270	0.11	-2.3
2,102,137	-				+2.5
2,102,137	-				-0.1
2,102,137	-				+0.6
2,102,167	+				-1.0
2,102,171	+				-3.8
2,102,171	+				-0.5
2,102,171	+				-4.4
2,102,171	+				-0.5
2,102,171	+				+0.3
2,102,173	-				-0.6
2,102,179	-				-2.9
2,102,184	-				+1.4
2,102,193	-				+0.0
2,102,196	-				-2.0
2,102,198	-				-0.5
2,102,203	-				-0.9
2,102,204	-				+0.3
2,102,215	+				+0.0
2,102,238	-				+0.2
2,102,238	-				+0.2
2,102,276	+				+0.8
2,102,284	-				-0.3
2,102,302	-				-2.1
2,102,311	+				-0.4
2,102,311	+				+0.8
2,102,312	-				-3.1
2,102,316	+				+0.0
2,102,316	+				-0.5
2,102,316	+				-0.1
2,102,318	+				+0.3
2,102,343	+				+0.6
2,102,345	-				-0.0
2,102,349	-				-1.2
2,102,351	-				+0.5
2,102,358	+		BBR_RS19275	0.11	+0.1
2,102,366	+		BBR_RS19275	0.11	-3.1
2,102,382	-		BBR_RS19275	0.13	-0.2
2,102,397	-		BBR_RS19275	0.14	-0.2
2,102,403	+		BBR_RS19275	0.15	+0.6
2,102,408	+		BBR_RS19275	0.15	+1.0
2,102,408	+		BBR_RS19275	0.15	-0.2
2,102,411	-		BBR_RS19275	0.15	+0.5
2,102,411	-		BBR_RS19275	0.15	+0.8
2,102,411	-		BBR_RS19275	0.15	+1.2
2,102,422	+		BBR_RS19275	0.17	-0.8
2,102,422	+		BBR_RS19275	0.17	-1.6
2,102,422	+		BBR_RS19275	0.17	-1.0
2,102,431	-		BBR_RS19275	0.17	+0.6
2,102,441	-		BBR_RS19275	0.18	+0.9
2,102,441	-		BBR_RS19275	0.18	+2.4
2,102,452	+		BBR_RS19275	0.19	+0.2
2,102,467	+		BBR_RS19275	0.21	-1.2
2,102,478	+		BBR_RS19275	0.22	-0.3
2,102,480	-		BBR_RS19275	0.22	+0.5
2,102,505	+		BBR_RS19275	0.24	+0.6
2,102,546	+		BBR_RS19275	0.28	-2.6
2,102,546	+		BBR_RS19275	0.28	-2.4
2,102,552	-		BBR_RS19275	0.29	-0.2
2,102,554	-		BBR_RS19275	0.29	+1.2
2,102,562	+		BBR_RS19275	0.30	-0.4
2,102,562	+		BBR_RS19275	0.30	-0.3
2,102,562	+		BBR_RS19275	0.30	+0.2
2,102,576	-		BBR_RS19275	0.31	-0.4
2,102,593	+		BBR_RS19275	0.33	-1.2
2,102,614	+		BBR_RS19275	0.35	+1.9
2,102,622	-		BBR_RS19275	0.35	+0.4
2,102,622	-		BBR_RS19275	0.35	+0.1
2,102,622	-		BBR_RS19275	0.35	-0.0
2,102,622	-		BBR_RS19275	0.35	+0.6
2,102,626	-		BBR_RS19275	0.36	-0.5
2,102,628	+		BBR_RS19275	0.36	-0.0
2,102,631	-		BBR_RS19275	0.36	+0.4
2,102,635	+		BBR_RS19275	0.37	+1.1
2,102,636	-		BBR_RS19275	0.37	+0.5
2,102,636	-		BBR_RS19275	0.37	+1.0
2,102,645	-		BBR_RS19275	0.37	-0.0
2,102,647	+		BBR_RS19275	0.38	+0.7
2,102,647	+		BBR_RS19275	0.38	-3.8
2,102,647	+		BBR_RS19275	0.38	+0.4
2,102,649	-		BBR_RS19275	0.38	-0.1
2,102,660	-		BBR_RS19275	0.39	-0.7
2,102,663	+		BBR_RS19275	0.39	+0.2
2,102,668	+		BBR_RS19275	0.40	+0.5
2,102,676	+		BBR_RS19275	0.40	+0.2
2,102,676	+		BBR_RS19275	0.40	-0.2
2,102,676	+		BBR_RS19275	0.40	+1.2
2,102,676	+		BBR_RS19275	0.40	-2.9
2,102,676	+		BBR_RS19275	0.40	-0.2
2,102,681	-		BBR_RS19275	0.41	+0.6
2,102,681	-		BBR_RS19275	0.41	-0.3
2,102,681	-		BBR_RS19275	0.41	-0.2
2,102,684	-		BBR_RS19275	0.41	-2.2
2,102,684	-		BBR_RS19275	0.41	+0.6
2,102,686	-		BBR_RS19275	0.41	+1.1
2,102,690	-		BBR_RS19275	0.42	+2.3
2,102,695	-		BBR_RS19275	0.42	+0.9
2,102,700	-		BBR_RS19275	0.43	+1.4
2,102,700	-		BBR_RS19275	0.43	+1.2
2,102,719	+		BBR_RS19275	0.44	-0.2
2,102,724	+		BBR_RS19275	0.45	+0.1
2,102,724	+		BBR_RS19275	0.45	-3.7
2,102,732	-		BBR_RS19275	0.46	-0.4
2,102,732	-		BBR_RS19275	0.46	-0.0
2,102,765	+		BBR_RS19275	0.49	+0.0
2,102,785	+		BBR_RS19275	0.51	+0.4
2,102,791	-		BBR_RS19275	0.51	-0.3
2,102,795	-		BBR_RS19275	0.52	+0.6
2,102,805	+		BBR_RS19275	0.52	+1.8
2,102,805	+		BBR_RS19275	0.52	+0.1
2,102,805	+		BBR_RS19275	0.52	-0.3
2,102,805	+		BBR_RS19275	0.52	+1.8
2,102,805	+		BBR_RS19275	0.52	-1.8
2,102,809	+		BBR_RS19275	0.53	+0.3
2,102,812	-		BBR_RS19275	0.53	+1.3
2,102,813	-		BBR_RS19275	0.53	+0.2
2,102,813	-		BBR_RS19275	0.53	+1.7
2,102,818	-		BBR_RS19275	0.54	+0.6
2,102,858	-		BBR_RS19275	0.57	+1.3
2,102,858	-		BBR_RS19275	0.57	+0.1
2,102,858	-		BBR_RS19275	0.57	+0.7
2,102,858	-		BBR_RS19275	0.57	+0.2
2,102,869	+		BBR_RS19275	0.58	+0.7
2,102,870	+		BBR_RS19275	0.59	+0.4
2,102,870	+		BBR_RS19275	0.59	+2.0
2,102,878	-		BBR_RS19275	0.59	-0.2
2,102,897	-		BBR_RS19275	0.61	-2.9
2,102,907	-		BBR_RS19275	0.62	+0.3
2,102,913	-		BBR_RS19275	0.63	+0.2
2,102,919	+		BBR_RS19275	0.63	+0.1
2,102,941	-		BBR_RS19275	0.65	+0.9
2,102,941	-		BBR_RS19275	0.65	+1.8
2,102,951	-		BBR_RS19275	0.66	-1.9
2,102,953	+		BBR_RS19275	0.66	+0.8
2,102,966	-		BBR_RS19275	0.68	+0.6
2,102,969	-		BBR_RS19275	0.68	+0.2
2,102,969	-		BBR_RS19275	0.68	-2.2
2,102,970	+		BBR_RS19275	0.68	-0.3
2,102,971	-		BBR_RS19275	0.68	+1.6
2,102,978	-		BBR_RS19275	0.69	+0.3
2,102,988	-		BBR_RS19275	0.70	+0.9
2,102,999	+		BBR_RS19275	0.71	+0.6
2,103,004	-		BBR_RS19275	0.71	-1.2
2,103,004	-		BBR_RS19275	0.71	-0.1
2,103,020	-		BBR_RS19275	0.73	-3.5
2,103,022	+		BBR_RS19275	0.73	-0.6
2,103,022	+		BBR_RS19275	0.73	-1.5
2,103,042	-		BBR_RS19275	0.75	-0.4
2,103,044	-		BBR_RS19275	0.75	+1.1
2,103,064	+		BBR_RS19275	0.77	-0.4
2,103,074	-		BBR_RS19275	0.78	-0.1
2,103,076	-		BBR_RS19275	0.78	+0.5
2,103,078	+		BBR_RS19275	0.78	-0.8
2,103,078	+		BBR_RS19275	0.78	-1.7
2,103,078	+		BBR_RS19275	0.78	+0.6
2,103,086	-		BBR_RS19275	0.79	+0.2
2,103,086	-		BBR_RS19275	0.79	-0.2
2,103,086	-		BBR_RS19275	0.79	+0.4
2,103,086	-		BBR_RS19275	0.79	+0.4
2,103,086	-		BBR_RS19275	0.79	-0.8
2,103,086	-		BBR_RS19275	0.79	-0.2
2,103,086	-		BBR_RS19275	0.79	+0.4
2,103,086	-		BBR_RS19275	0.79	+1.1
2,103,086	-		BBR_RS19275	0.79	+1.3
2,103,091	-		BBR_RS19275	0.79	+0.8
2,103,096	-		BBR_RS19275	0.80	+1.1
2,103,096	-		BBR_RS19275	0.80	+0.1
2,103,098	-		BBR_RS19275	0.80	+0.8
2,103,136	-		BBR_RS19275	0.84	-1.4
2,103,170	+		BBR_RS19275	0.87	+0.5
2,103,175	-		BBR_RS19275	0.87	+1.1