Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19125

Experiment: mouse 3; day 1; diet=StandardDiet; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mouse 3; day 1; diet=StandardDiet; sample=FecalPellet
2,064,314	-		BBR_RS19120	0.75	+1.3
2,064,396	+		BBR_RS19120	0.78	+1.3
2,064,404	-		BBR_RS19120	0.78	+0.3
2,064,404	-		BBR_RS19120	0.78	+2.3
2,064,404	-		BBR_RS19120	0.78	-1.7
2,064,413	-		BBR_RS19120	0.78	+0.3
2,064,447	+		BBR_RS19120	0.79	+2.3
2,064,455	-		BBR_RS19120	0.79	-5.9
2,064,455	-		BBR_RS19120	0.79	-2.3
2,064,455	-		BBR_RS19120	0.79	-0.3
2,064,460	-		BBR_RS19120	0.79	+1.3
2,064,539	-		BBR_RS19120	0.82	-2.2
2,064,563	-		BBR_RS19120	0.82	-2.9
2,064,608	-		BBR_RS19120	0.83	-2.6
2,064,635	-		BBR_RS19120	0.84	-3.3
2,064,637	-		BBR_RS19120	0.84	-3.8
2,064,679	-		BBR_RS19120	0.85	-4.2
2,064,695	-		BBR_RS19120	0.86	+0.9
2,064,696	-		BBR_RS19120	0.86	-1.9
2,064,717	-		BBR_RS19120	0.86	-0.7
2,064,742	+		BBR_RS19120	0.87	-0.3
2,064,742	+		BBR_RS19120	0.87	-2.3
2,064,750	-		BBR_RS19120	0.87	-2.2
2,064,750	-		BBR_RS19120	0.87	-2.3
2,064,790	+		BBR_RS19120	0.88	+0.3
2,064,795	-		BBR_RS19120	0.89	-0.3
2,064,803	+		BBR_RS19120	0.89	-0.3
2,064,852	+				+0.3
2,064,860	-				-1.5
2,064,860	-				+1.3
2,064,873	+				+1.3
2,064,881	-				+0.3
2,064,903	-				-0.3
2,064,905	-				-1.0
2,064,957	-				-2.7
2,064,960	+				+1.3
2,064,962	-				-3.4
2,064,992	-				-1.5
2,065,000	-				-1.0
2,065,002	+				+1.3
2,065,061	-				-0.3
2,065,071	-				+1.3
2,065,085	-				-0.2
2,065,205	-				-3.8
2,065,208	+				+0.3
2,065,219	+				-3.6
2,065,221	+				-0.8
2,065,221	+				-0.1
2,065,227	-				-3.0
2,065,239	+				+1.9
2,065,255	-				-0.6
2,065,261	+				+0.3
2,065,261	+				+1.3
2,065,269	-				-0.7
2,065,269	-				+0.3
2,065,269	-				-1.0
2,065,269	-				-1.3
2,065,269	-				+0.3
2,065,271	-				-1.5
2,065,282	+				-2.4
2,065,316	-				-3.2
2,065,318	-				-2.6
2,065,326	+				-2.9
2,065,326	+				-1.7
2,065,326	+				+1.3
2,065,326	+				-0.3
2,065,364	-		BBR_RS19125	0.11	-2.9
2,065,364	-		BBR_RS19125	0.11	-2.3
2,065,364	-		BBR_RS19125	0.11	-0.1
2,065,371	-		BBR_RS19125	0.12	-3.1
2,065,381	-		BBR_RS19125	0.13	-2.3
2,065,381	-		BBR_RS19125	0.13	-1.0
2,065,390	+		BBR_RS19125	0.13	-0.3
2,065,464	-		BBR_RS19125	0.19	-1.7
2,065,464	-		BBR_RS19125	0.19	-1.5
2,065,478	+		BBR_RS19125	0.20	+0.3
2,065,488	-		BBR_RS19125	0.21	-0.3
2,065,488	-		BBR_RS19125	0.21	-2.4
2,065,488	-		BBR_RS19125	0.21	-2.4
2,065,494	-		BBR_RS19125	0.21	-0.2
2,065,516	-		BBR_RS19125	0.23	-2.6
2,065,516	-		BBR_RS19125	0.23	-1.5
2,065,521	-		BBR_RS19125	0.23	-1.7
2,065,526	-		BBR_RS19125	0.24	-3.5
2,065,546	-		BBR_RS19125	0.25	-2.9
2,065,563	-		BBR_RS19125	0.26	-3.7
2,065,581	-		BBR_RS19125	0.28	-3.0
2,065,581	-		BBR_RS19125	0.28	-2.6
2,065,595	-		BBR_RS19125	0.29	-2.8
2,065,630	-		BBR_RS19125	0.32	+0.8
2,065,637	+		BBR_RS19125	0.32	+0.3
2,065,640	-		BBR_RS19125	0.32	-1.9
2,065,640	-		BBR_RS19125	0.32	-1.9
2,065,645	-		BBR_RS19125	0.33	-1.3
2,065,653	-		BBR_RS19125	0.33	-2.8
2,065,658	-		BBR_RS19125	0.34	-2.9
2,065,675	-		BBR_RS19125	0.35	-2.7
2,065,675	-		BBR_RS19125	0.35	-1.0
2,065,681	-		BBR_RS19125	0.35	-2.6
2,065,735	+		BBR_RS19125	0.40	+1.3
2,065,741	-		BBR_RS19125	0.40	-3.5
2,065,745	-		BBR_RS19125	0.40	-0.0
2,065,745	-		BBR_RS19125	0.40	-2.9
2,065,753	-		BBR_RS19125	0.41	-3.2
2,065,753	-		BBR_RS19125	0.41	-2.7
2,065,774	-		BBR_RS19125	0.43	-3.2
2,065,778	-		BBR_RS19125	0.43	-2.9
2,065,779	+		BBR_RS19125	0.43	+1.3
2,065,797	-		BBR_RS19125	0.44	-3.2
2,065,800	+		BBR_RS19125	0.45	-0.3
2,065,808	-		BBR_RS19125	0.45	-2.0
2,065,808	-		BBR_RS19125	0.45	-1.9
2,065,876	-		BBR_RS19125	0.50	-1.7
2,065,876	-		BBR_RS19125	0.50	-3.1
2,065,881	-		BBR_RS19125	0.51	-3.2
2,065,889	-		BBR_RS19125	0.51	-2.7
2,065,955	-		BBR_RS19125	0.56	-1.0
2,065,957	-		BBR_RS19125	0.57	-4.3
2,065,967	-		BBR_RS19125	0.57	+0.3
2,065,978	-		BBR_RS19125	0.58	-1.0
2,066,023	-		BBR_RS19125	0.62	-2.0
2,066,097	-		BBR_RS19125	0.67	-3.3
2,066,169	-		BBR_RS19125	0.73	-0.7
2,066,199	-		BBR_RS19125	0.75	-2.7
2,066,199	-		BBR_RS19125	0.75	-2.9
2,066,210	+		BBR_RS19125	0.76	+0.7
2,066,218	-		BBR_RS19125	0.76	+1.1
2,066,252	-		BBR_RS19125	0.79	-3.3
2,066,252	-		BBR_RS19125	0.79	-2.9
2,066,252	-		BBR_RS19125	0.79	-1.7
2,066,303	-		BBR_RS19125	0.83	-1.5
2,066,313	-		BBR_RS19125	0.84	-2.7
2,066,324	-		BBR_RS19125	0.85	-2.9
2,066,357	-		BBR_RS19125	0.87	-0.7
2,066,362	-		BBR_RS19125	0.87	-2.4
2,066,364	-		BBR_RS19125	0.88	+0.4
2,066,397	-				-0.7
2,066,403	+				+1.3
2,066,411	-				-3.7
2,066,411	-				-1.5
2,066,431	-				-1.1
2,066,503	+				+0.3
2,066,503	-				-1.7
2,066,503	-				-1.6
2,066,511	-				-1.3
2,066,511	-				-3.1
2,066,513	+				+0.3
2,066,538	+				-3.1
2,066,539	+				-3.7
2,066,539	+				-3.2
2,066,545	-				+0.1
2,066,545	-				-1.2
2,066,545	-				+0.3
2,066,547	+				-2.6
2,066,547	-				-0.4
2,066,547	-				-3.5
2,066,547	-				-4.5
2,066,547	-				+0.5
2,066,553	+				-1.7
2,066,557	-				-3.8
2,066,561	-				-3.3
2,066,561	-				+0.6
2,066,565	+				-3.5
2,066,565	+				-3.7
2,066,569	-				+0.8
2,066,571	-				+0.6
2,066,573	-				-1.7
2,066,580	+				-3.7
2,066,648	-				+0.4
2,066,668	+				-0.4
2,066,673	+				-0.3
2,066,673	+				-0.3
2,066,673	+				+0.9
2,066,673	+				-2.8
2,066,673	+				+0.3
2,066,673	+				-0.2
2,066,678	+				+0.8
2,066,678	+				+1.3
2,066,678	+				+0.3
2,066,678	+				+0.5
2,066,681	-				+0.9
2,066,683	+				-0.1
2,066,689	+				+0.1
2,066,694	+				+0.5
2,066,694	+				-0.9
2,066,694	+				-2.3
2,066,694	+				+0.9
2,066,702	-				+0.6
2,066,707	+				+0.6
2,066,708	-				-2.6
2,066,715	-				+0.1
2,066,732	-				+0.7
2,066,742	-				+2.0
2,066,742	-				+1.0
2,066,742	-				+0.7
2,066,762	-				-0.7
2,066,776	-				-1.0
2,066,786	-				+0.5
2,066,786	-				+0.5