Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18745

Experiment: mouse 3; day 1; diet=StandardDiet; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mouse 3; day 1; diet=StandardDiet; sample=FecalPellet
1,995,330	-		BBR_RS18740	0.34	-2.9
1,995,348	+		BBR_RS18740	0.35	+0.9
1,995,356	-		BBR_RS18740	0.36	+0.2
1,995,356	-		BBR_RS18740	0.36	-0.4
1,995,375	-		BBR_RS18740	0.37	-0.9
1,995,386	+		BBR_RS18740	0.38	+0.0
1,995,386	+		BBR_RS18740	0.38	-0.0
1,995,386	+		BBR_RS18740	0.38	-2.5
1,995,403	+		BBR_RS18740	0.39	+1.0
1,995,408	+		BBR_RS18740	0.39	+0.7
1,995,408	-		BBR_RS18740	0.39	-0.5
1,995,416	-		BBR_RS18740	0.40	+1.9
1,995,418	-		BBR_RS18740	0.40	+1.2
1,995,421	-		BBR_RS18740	0.40	+0.5
1,995,431	-		BBR_RS18740	0.41	+2.3
1,995,453	+		BBR_RS18740	0.42	+0.2
1,995,453	+		BBR_RS18740	0.42	-1.5
1,995,459	+		BBR_RS18740	0.43	+0.6
1,995,467	-		BBR_RS18740	0.43	-0.3
1,995,497	+		BBR_RS18740	0.45	+0.2
1,995,497	+		BBR_RS18740	0.45	+1.5
1,995,497	+		BBR_RS18740	0.45	-0.5
1,995,497	+		BBR_RS18740	0.45	-0.4
1,995,497	+		BBR_RS18740	0.45	-2.8
1,995,497	+		BBR_RS18740	0.45	-3.9
1,995,497	+		BBR_RS18740	0.45	-1.4
1,995,505	-		BBR_RS18740	0.46	+0.6
1,995,507	+		BBR_RS18740	0.46	-1.4
1,995,509	+		BBR_RS18740	0.46	-0.6
1,995,509	+		BBR_RS18740	0.46	+0.8
1,995,515	-		BBR_RS18740	0.46	+0.4
1,995,537	-		BBR_RS18740	0.48	+0.7
1,995,550	+		BBR_RS18740	0.49	+2.0
1,995,607	+		BBR_RS18740	0.52	-1.4
1,995,607	+		BBR_RS18740	0.52	+0.9
1,995,607	+		BBR_RS18740	0.52	-0.1
1,995,622	-		BBR_RS18740	0.53	-0.5
1,995,649	+		BBR_RS18740	0.55	-1.4
1,995,678	+		BBR_RS18740	0.57	-0.3
1,995,678	+		BBR_RS18740	0.57	-0.3
1,995,686	-		BBR_RS18740	0.58	-0.6
1,995,686	-		BBR_RS18740	0.58	+0.1
1,995,733	-		BBR_RS18740	0.61	-0.1
1,995,733	-		BBR_RS18740	0.61	-1.2
1,995,733	-		BBR_RS18740	0.61	+0.1
1,995,757	-		BBR_RS18740	0.62	+0.7
1,995,783	+		BBR_RS18740	0.64	+1.2
1,995,783	+		BBR_RS18740	0.64	+0.0
1,995,817	+		BBR_RS18740	0.66	+0.6
1,995,825	-		BBR_RS18740	0.67	+0.5
1,995,825	-		BBR_RS18740	0.67	-0.1
1,995,825	-		BBR_RS18740	0.67	-0.2
1,995,867	+		BBR_RS18740	0.70	+1.4
1,995,867	+		BBR_RS18740	0.70	+0.7
1,995,867	+		BBR_RS18740	0.70	-1.1
1,995,875	-		BBR_RS18740	0.70	+1.3
1,995,899	+		BBR_RS18740	0.72	-0.6
1,995,910	+		BBR_RS18740	0.73	+1.3
1,995,910	+		BBR_RS18740	0.73	+0.3
1,995,914	-		BBR_RS18740	0.73	+1.3
1,995,914	-		BBR_RS18740	0.73	+1.4
1,995,922	+		BBR_RS18740	0.73	-2.8
1,995,945	-		BBR_RS18740	0.75	-0.3
1,995,967	+		BBR_RS18740	0.76	+0.2
1,996,007	-		BBR_RS18740	0.79	-1.4
1,996,007	-		BBR_RS18740	0.79	-1.5
1,996,033	+		BBR_RS18740	0.81	+1.9
1,996,036	-		BBR_RS18740	0.81	-0.0
1,996,041	-		BBR_RS18740	0.81	-2.5
1,996,041	-		BBR_RS18740	0.81	+1.2
1,996,041	-		BBR_RS18740	0.81	+0.0
1,996,042	+		BBR_RS18740	0.81	-0.2
1,996,057	+		BBR_RS18740	0.82	-0.5
1,996,057	+		BBR_RS18740	0.82	+0.8
1,996,057	+		BBR_RS18740	0.82	-0.0
1,996,057	+		BBR_RS18740	0.82	+0.1
1,996,065	-		BBR_RS18740	0.83	-0.0
1,996,094	+		BBR_RS18740	0.85	+0.2
1,996,121	-		BBR_RS18740	0.87	+1.1
1,996,125	-		BBR_RS18740	0.87	+0.2
1,996,126	-		BBR_RS18740	0.87	-0.1
1,996,152	+		BBR_RS18740	0.89	-1.2
1,996,155	-		BBR_RS18740	0.89	+0.1
1,996,157	+		BBR_RS18740	0.89	+0.0
1,996,182	-				+0.7
1,996,190	+				-0.3
1,996,198	-				-0.3
1,996,198	-				-1.8
1,996,222	+				+0.9
1,996,229	-				-0.1
1,996,264	-				+0.4
1,996,264	-				+1.3
1,996,265	-				+1.0
1,996,265	-				+0.4
1,996,274	+				+0.9
1,996,314	+				+0.5
1,996,317	+				-0.7
1,996,317	+				+0.4
1,996,317	+				-2.0
1,996,335	-				+0.2
1,996,335	-				+0.7
1,996,341	+				+0.9
1,996,353	+				+1.0
1,996,389	-				-0.7
1,996,389	-				-3.5
1,996,389	-				-4.8
1,996,389	-				-2.2
1,996,394	-				-2.7
1,996,849	-		BBR_RS18745	0.46	-1.1
1,996,870	-		BBR_RS18745	0.48	-4.4
1,997,528	-				-0.2
1,997,542	-				+0.5
1,997,542	-				-2.1
1,997,542	-				-0.3
1,997,585	-				-0.4
1,997,585	-				-1.9
1,997,585	-				-3.0
1,997,657	-		BBR_RS18750	0.13	-1.8
1,997,706	+		BBR_RS18750	0.17	+1.5
1,997,714	-		BBR_RS18750	0.18	-0.9
1,997,722	-		BBR_RS18750	0.18	+1.0
1,997,763	+		BBR_RS18750	0.22	+2.8
1,997,763	-		BBR_RS18750	0.22	-0.5
1,997,771	-		BBR_RS18750	0.23	-1.1
1,997,785	+		BBR_RS18750	0.24	-1.2
1,997,785	-		BBR_RS18750	0.24	-1.2
1,997,793	-		BBR_RS18750	0.25	-1.1
1,997,793	-		BBR_RS18750	0.25	+0.6
1,997,793	-		BBR_RS18750	0.25	-0.8
1,997,837	+		BBR_RS18750	0.28	+1.8
1,997,845	-		BBR_RS18750	0.29	-0.4
1,997,850	+		BBR_RS18750	0.30	-3.0
1,997,850	+		BBR_RS18750	0.30	-4.0
1,997,852	+		BBR_RS18750	0.30	+0.4
1,997,857	+		BBR_RS18750	0.30	-2.6
1,997,857	+		BBR_RS18750	0.30	-0.5
1,997,858	-		BBR_RS18750	0.30	-3.2
1,997,882	+		BBR_RS18750	0.32	-0.1
1,997,882	+		BBR_RS18750	0.32	+0.4
1,997,882	+		BBR_RS18750	0.32	-2.3
1,997,890	-		BBR_RS18750	0.33	-0.9
1,997,894	-		BBR_RS18750	0.33	+1.7
1,997,923	+		BBR_RS18750	0.36	+0.7
1,997,928	+		BBR_RS18750	0.36	-2.2
1,997,928	-		BBR_RS18750	0.36	-0.5
1,997,938	+		BBR_RS18750	0.37	-0.4
1,997,955	-		BBR_RS18750	0.39	+0.3
1,997,955	-		BBR_RS18750	0.39	-3.6
1,997,971	-		BBR_RS18750	0.40	-2.5
1,998,001	+		BBR_RS18750	0.43	-4.3
1,998,025	+		BBR_RS18750	0.45	-2.0
1,998,038	+		BBR_RS18750	0.46	+0.3
1,998,038	+		BBR_RS18750	0.46	+0.3
1,998,077	+		BBR_RS18750	0.49	+0.0
1,998,085	-		BBR_RS18750	0.50	+0.9
1,998,085	-		BBR_RS18750	0.50	+0.1
1,998,107	-		BBR_RS18750	0.52	+1.0
1,998,152	+		BBR_RS18750	0.56	+1.2
1,998,153	+		BBR_RS18750	0.56	-3.2
1,998,160	+		BBR_RS18750	0.56	+0.2
1,998,160	-		BBR_RS18750	0.56	+1.4
1,998,165	+		BBR_RS18750	0.57	-0.1
1,998,168	-		BBR_RS18750	0.57	+0.0
1,998,168	-		BBR_RS18750	0.57	+1.1
1,998,251	-		BBR_RS18750	0.64	+0.6
1,998,266	+		BBR_RS18750	0.66	-0.9
1,998,274	-		BBR_RS18750	0.66	+0.2
1,998,286	-		BBR_RS18750	0.67	-1.6
1,998,299	-		BBR_RS18750	0.68	-3.9
1,998,343	-		BBR_RS18750	0.72	-1.1
1,998,343	-		BBR_RS18750	0.72	-1.3
1,998,343	-		BBR_RS18750	0.72	-1.7
1,998,365	-		BBR_RS18750	0.74	+1.0
1,998,365	-		BBR_RS18750	0.74	+0.6
1,998,384	-		BBR_RS18750	0.76	-0.5
1,998,422	-		BBR_RS18750	0.79	+1.0
1,998,432	-		BBR_RS18750	0.80	+0.3
1,998,432	-		BBR_RS18750	0.80	-4.3
1,998,437	-		BBR_RS18750	0.80	-3.8