Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17495

Experiment: mouse 3; day 1; diet=StandardDiet; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mouse 3; day 1; diet=StandardDiet; sample=FecalPellet
1,703,476	+		BBR_RS17490	0.11	-4.0
1,703,482	-		BBR_RS17490	0.12	+0.5
1,703,496	-		BBR_RS17490	0.13	-2.2
1,703,569	+		BBR_RS17490	0.20	-0.1
1,703,600	+		BBR_RS17490	0.23	-3.3
1,703,601	+		BBR_RS17490	0.23	-1.5
1,703,601	+		BBR_RS17490	0.23	-3.6
1,703,614	-		BBR_RS17490	0.24	-1.8
1,703,619	-		BBR_RS17490	0.24	-1.1
1,703,624	-		BBR_RS17490	0.25	-1.8
1,703,631	-		BBR_RS17490	0.26	-0.2
1,703,648	+		BBR_RS17490	0.27	-2.5
1,703,655	+		BBR_RS17490	0.28	-3.4
1,703,671	-		BBR_RS17490	0.29	-1.7
1,703,671	-		BBR_RS17490	0.29	-2.1
1,703,698	+		BBR_RS17490	0.32	-0.2
1,703,698	+		BBR_RS17490	0.32	-4.3
1,703,701	-		BBR_RS17490	0.32	-4.2
1,703,741	+		BBR_RS17490	0.36	-4.2
1,703,741	+		BBR_RS17490	0.36	+0.5
1,703,742	-		BBR_RS17490	0.36	-1.1
1,703,749	-		BBR_RS17490	0.36	-0.8
1,703,801	+		BBR_RS17490	0.41	-2.5
1,703,816	+		BBR_RS17490	0.43	-1.4
1,703,835	+		BBR_RS17490	0.44	+0.4
1,703,848	-		BBR_RS17490	0.46	+1.7
1,703,860	+		BBR_RS17490	0.47	-4.6
1,703,860	+		BBR_RS17490	0.47	-3.6
1,703,865	+		BBR_RS17490	0.47	-4.5
1,703,865	+		BBR_RS17490	0.47	-3.6
1,703,866	-		BBR_RS17490	0.47	-4.0
1,703,868	-		BBR_RS17490	0.47	-3.8
1,703,870	+		BBR_RS17490	0.48	+0.4
1,703,943	-		BBR_RS17490	0.54	-3.4
1,703,970	+		BBR_RS17490	0.57	-4.0
1,703,970	+		BBR_RS17490	0.57	-1.4
1,703,978	-		BBR_RS17490	0.58	+1.8
1,703,984	-		BBR_RS17490	0.58	-4.3
1,703,988	-		BBR_RS17490	0.59	-0.7
1,704,009	-		BBR_RS17490	0.61	+0.5
1,704,009	-		BBR_RS17490	0.61	-0.0
1,704,016	+		BBR_RS17490	0.61	-2.2
1,704,019	-		BBR_RS17490	0.61	-1.8
1,704,031	+		BBR_RS17490	0.63	-0.3
1,704,031	+		BBR_RS17490	0.63	-0.2
1,704,031	+		BBR_RS17490	0.63	-1.9
1,704,039	-		BBR_RS17490	0.63	-1.8
1,704,053	+		BBR_RS17490	0.65	-0.4
1,704,056	+		BBR_RS17490	0.65	-3.2
1,704,058	-		BBR_RS17490	0.65	+0.9
1,704,076	+		BBR_RS17490	0.67	-4.1
1,704,083	-		BBR_RS17490	0.67	-1.7
1,704,106	-		BBR_RS17490	0.70	-0.8
1,704,106	-		BBR_RS17490	0.70	-1.8
1,704,113	-		BBR_RS17490	0.70	-2.5
1,704,115	+		BBR_RS17490	0.70	-0.7
1,704,115	+		BBR_RS17490	0.70	-1.8
1,704,134	+		BBR_RS17490	0.72	-0.1
1,704,150	+		BBR_RS17490	0.74	-4.0
1,704,174	-		BBR_RS17490	0.76	+0.2
1,704,174	-		BBR_RS17490	0.76	-4.0
1,704,174	-		BBR_RS17490	0.76	-4.0
1,704,177	-		BBR_RS17490	0.76	-2.4
1,704,181	+		BBR_RS17490	0.76	-4.4
1,704,181	+		BBR_RS17490	0.76	-2.2
1,704,181	+		BBR_RS17490	0.76	-1.0
1,704,181	+		BBR_RS17490	0.76	-1.5
1,704,181	+		BBR_RS17490	0.76	-1.6
1,704,191	+		BBR_RS17490	0.77	+0.6
1,704,206	-		BBR_RS17490	0.79	-2.4
1,704,225	+		BBR_RS17490	0.81	-3.0
1,704,229	-		BBR_RS17490	0.81	-3.2
1,704,261	+		BBR_RS17490	0.84	-2.5
1,704,266	+		BBR_RS17490	0.84	-4.9
1,704,266	+		BBR_RS17490	0.84	-2.9
1,704,266	+		BBR_RS17490	0.84	-2.2
1,704,266	+		BBR_RS17490	0.84	-0.7
1,704,269	-		BBR_RS17490	0.85	-3.3
1,704,269	-		BBR_RS17490	0.85	-2.8
1,704,273	+		BBR_RS17490	0.85	-1.1
1,704,274	-		BBR_RS17490	0.85	-2.5
1,704,274	-		BBR_RS17490	0.85	-2.8
1,704,285	+		BBR_RS17490	0.86	+0.9
1,704,311	+		BBR_RS17490	0.89	-4.0
1,704,311	+		BBR_RS17490	0.89	-3.7
1,704,311	+		BBR_RS17490	0.89	+0.8
1,704,311	+		BBR_RS17490	0.89	-0.4
1,704,319	-		BBR_RS17490	0.89	+0.8
1,704,333	+				+0.1
1,704,343	+				-0.0
1,704,346	+				-3.2
1,704,366	-				-0.2
1,704,366	-				-3.2
1,704,366	-				-3.2
1,704,379	-				-1.6
1,704,386	-				-3.6
1,704,491	+				-3.5
1,704,510	-				-1.0
1,704,510	-				-2.2
1,704,512	+				-2.7
1,704,520	-				-4.1
1,704,521	+				-1.2
1,704,557	+		BBR_RS17495	0.13	-3.2
1,704,576	+		BBR_RS17495	0.15	-2.7
1,704,576	+		BBR_RS17495	0.15	-0.3
1,704,576	+		BBR_RS17495	0.15	-2.8
1,704,576	+		BBR_RS17495	0.15	-2.9
1,704,584	-		BBR_RS17495	0.16	-3.5
1,704,603	-		BBR_RS17495	0.18	+0.4
1,704,626	+		BBR_RS17495	0.21	-3.3
1,704,629	-		BBR_RS17495	0.21	-3.6
1,704,634	-		BBR_RS17495	0.21	-1.8
1,704,634	-		BBR_RS17495	0.21	-2.9
1,704,636	+		BBR_RS17495	0.22	-1.9
1,704,636	+		BBR_RS17495	0.22	-0.5
1,704,639	+		BBR_RS17495	0.22	-1.1
1,704,641	+		BBR_RS17495	0.22	-4.4
1,704,650	-		BBR_RS17495	0.23	-4.4
1,704,667	-		BBR_RS17495	0.25	+0.3
1,704,669	+		BBR_RS17495	0.25	-1.0
1,704,692	+		BBR_RS17495	0.28	-1.1
1,704,700	-		BBR_RS17495	0.28	-3.5
1,704,700	-		BBR_RS17495	0.28	-0.3
1,704,700	-		BBR_RS17495	0.28	-4.8
1,704,713	+		BBR_RS17495	0.30	-0.7
1,704,714	+		BBR_RS17495	0.30	-1.1
1,704,746	-		BBR_RS17495	0.33	-4.0
1,704,815	-		BBR_RS17495	0.41	-4.1
1,704,826	+		BBR_RS17495	0.42	-3.2
1,704,968	+		BBR_RS17495	0.57	-1.0
1,704,968	+		BBR_RS17495	0.57	+0.2
1,704,980	-		BBR_RS17495	0.58	-2.6
1,705,037	-		BBR_RS17495	0.64	-3.6
1,705,055	+		BBR_RS17495	0.66	-3.7
1,705,063	-		BBR_RS17495	0.67	-0.9
1,705,069	+		BBR_RS17495	0.68	-3.4
1,705,074	+		BBR_RS17495	0.68	-3.7
1,705,074	+		BBR_RS17495	0.68	-2.3
1,705,115	+		BBR_RS17495	0.72	-2.5
1,705,115	+		BBR_RS17495	0.72	-3.9
1,705,123	-		BBR_RS17495	0.73	-2.7
1,705,123	-		BBR_RS17495	0.73	-1.4
1,705,123	-		BBR_RS17495	0.73	-0.1
1,705,123	-		BBR_RS17495	0.73	-2.0
1,705,142	+		BBR_RS17495	0.75	-3.5
1,705,145	-		BBR_RS17495	0.76	+0.2
1,705,188	-		BBR_RS17495	0.80	-2.7
1,705,188	-		BBR_RS17495	0.80	-0.9
1,705,196	+		BBR_RS17495	0.81	-3.9
1,705,214	-		BBR_RS17495	0.83	-3.7
1,705,223	+		BBR_RS17495	0.84	-0.3
1,705,244	+		BBR_RS17495	0.86	-3.7
1,705,246	-		BBR_RS17495	0.86	-3.7
1,705,252	-		BBR_RS17495	0.87	-2.5
1,705,301	-				+0.3
1,705,310	+				-1.3
1,705,310	+				-1.2
1,705,310	+				+1.1
1,705,312	+				+0.1
1,705,312	+				+0.9
1,705,312	+				-0.7
1,705,312	+				+0.6
1,705,312	+				+0.2
1,705,312	+				+0.8
1,705,312	+				+1.4
1,705,317	+				+1.1
1,705,320	-				+1.7
1,705,320	-				-0.2
1,705,333	+				+0.3
1,705,344	+				-0.7
1,705,352	-				-0.6
1,705,377	-				-1.6
1,705,394	-				-1.7
1,705,419	-				-1.4
1,705,425	+				-0.3
1,705,469	+		BBR_RS17500	0.18	+0.5
1,705,494	-		BBR_RS17500	0.22	-2.5
1,705,522	+		BBR_RS17500	0.28	-3.7
1,705,546	+		BBR_RS17500	0.32	-4.8
1,705,548	+		BBR_RS17500	0.32	+3.1
1,705,548	+		BBR_RS17500	0.32	-3.8
1,705,548	+		BBR_RS17500	0.32	-0.0
1,705,556	-		BBR_RS17500	0.34	-1.7
1,705,596	-		BBR_RS17500	0.41	-1.7
1,705,599	+		BBR_RS17500	0.42	-1.8
1,705,607	-		BBR_RS17500	0.43	-3.2
1,705,609	+		BBR_RS17500	0.44	-1.1
1,705,611	+		BBR_RS17500	0.44	-1.7
1,705,617	-		BBR_RS17500	0.45	-3.1
1,705,669	+		BBR_RS17500	0.55	-3.8
1,705,716	+		BBR_RS17500	0.63	-3.9
1,705,793	-		BBR_RS17500	0.78	-4.5
1,705,801	+		BBR_RS17500	0.79	-5.6
1,705,801	+		BBR_RS17500	0.79	-1.3
1,705,801	+		BBR_RS17500	0.79	-1.1
1,705,801	+		BBR_RS17500	0.79	+0.6
1,705,803	+		BBR_RS17500	0.79	-4.7
1,705,804	-		BBR_RS17500	0.80	-3.3
1,705,806	+		BBR_RS17500	0.80	-1.7
1,705,809	-		BBR_RS17500	0.80	-2.1
1,705,809	-		BBR_RS17500	0.80	-3.9
1,705,811	-		BBR_RS17500	0.81	-5.0
1,705,908	+				-0.4
1,705,931	+				-3.4
1,705,931	+				-1.2
1,705,931	+				-3.5
1,705,939	-				-4.1
1,705,939	-				-4.2
1,705,939	-				-1.5
1,706,045	+		BBR_RS17505	0.13	-3.2
1,706,053	-		BBR_RS17505	0.13	-2.0
1,706,059	-		BBR_RS17505	0.14	-3.1
1,706,075	-		BBR_RS17505	0.15	-1.6
1,706,112	+		BBR_RS17505	0.19	-3.8
1,706,129	+		BBR_RS17505	0.21	-0.7
1,706,138	-		BBR_RS17505	0.21	-3.9
1,706,154	+		BBR_RS17505	0.23	-2.6
1,706,200	+		BBR_RS17505	0.27	+1.4
1,706,202	+		BBR_RS17505	0.27	-2.6
1,706,212	+		BBR_RS17505	0.28	-4.9
1,706,212	+		BBR_RS17505	0.28	-2.8
1,706,220	-		BBR_RS17505	0.29	-1.1
1,706,227	+		BBR_RS17505	0.30	-2.1
1,706,232	+		BBR_RS17505	0.30	-4.1
1,706,237	+		BBR_RS17505	0.31	-0.7
1,706,244	-		BBR_RS17505	0.31	-4.5
1,706,263	-		BBR_RS17505	0.33	-3.8
1,706,337	+		BBR_RS17505	0.40	-0.7
1,706,345	-		BBR_RS17505	0.41	-3.3
1,706,357	-		BBR_RS17505	0.42	+0.3