Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14205

Experiment: mouse 3; day 1; diet=StandardDiet; sample=FecalPellet

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS14190 and BBR_RS14200 are separated by 260 nucleotidesBBR_RS14200 and BBR_RS14205 are separated by 45 nucleotidesBBR_RS14205 and BBR_RS14210 overlap by 4 nucleotides BBR_RS14190: BBR_RS14190 - transcriptional regulator, at 958,503 to 959,837 _RS14190 BBR_RS14200: BBR_RS14200 - WhiB family transcriptional regulator, at 960,098 to 960,397 _RS14200 BBR_RS14205: BBR_RS14205 - hypothetical protein, at 960,443 to 963,535 _RS14205 BBR_RS14210: BBR_RS14210 - hypothetical protein, at 963,532 to 965,073 _RS14210 Position (kb) 960 961 962 963 964Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 959.444 kb on + strand, within BBR_RS14190at 959.444 kb on - strand, within BBR_RS14190at 959.450 kb on + strand, within BBR_RS14190at 959.452 kb on - strand, within BBR_RS14190at 959.481 kb on - strand, within BBR_RS14190at 959.491 kb on - strand, within BBR_RS14190at 959.527 kb on - strand, within BBR_RS14190at 959.575 kb on + strand, within BBR_RS14190at 959.597 kb on + strand, within BBR_RS14190at 959.597 kb on + strand, within BBR_RS14190at 959.605 kb on - strand, within BBR_RS14190at 959.612 kb on + strand, within BBR_RS14190at 959.620 kb on - strand, within BBR_RS14190at 959.637 kb on - strand, within BBR_RS14190at 959.652 kb on - strand, within BBR_RS14190at 959.688 kb on - strand, within BBR_RS14190at 959.735 kb on - strandat 959.758 kb on - strandat 959.908 kb on - strandat 959.929 kb on - strandat 959.932 kb on + strandat 959.964 kb on - strandat 960.142 kb on + strand, within BBR_RS14200at 960.142 kb on + strand, within BBR_RS14200at 960.150 kb on - strand, within BBR_RS14200at 960.154 kb on + strand, within BBR_RS14200at 960.154 kb on + strand, within BBR_RS14200at 960.162 kb on - strand, within BBR_RS14200at 960.162 kb on - strand, within BBR_RS14200at 960.195 kb on + strand, within BBR_RS14200at 960.205 kb on + strand, within BBR_RS14200at 960.342 kb on + strand, within BBR_RS14200at 960.350 kb on - strand, within BBR_RS14200at 960.379 kb on + strandat 960.397 kb on + strandat 960.439 kb on - strandat 960.516 kb on + strandat 960.946 kb on - strand, within BBR_RS14205at 961.366 kb on + strand, within BBR_RS14205at 961.838 kb on - strand, within BBR_RS14205at 962.195 kb on - strand, within BBR_RS14205at 962.742 kb on - strand, within BBR_RS14205at 962.794 kb on + strand, within BBR_RS14205at 962.802 kb on - strand, within BBR_RS14205at 962.827 kb on + strand, within BBR_RS14205at 962.830 kb on + strand, within BBR_RS14205at 962.836 kb on + strand, within BBR_RS14205at 962.946 kb on + strand, within BBR_RS14205at 963.245 kb on + strandat 963.275 kb on - strandat 963.383 kb on + strandat 963.391 kb on + strandat 963.391 kb on + strandat 963.392 kb on + strandat 963.399 kb on - strandat 963.414 kb on + strandat 963.422 kb on - strandat 963.456 kb on - strandat 963.483 kb on - strandat 963.495 kb on + strandat 963.516 kb on + strandat 963.555 kb on + strandat 963.709 kb on - strand, within BBR_RS14210at 963.993 kb on - strand, within BBR_RS14210at 964.075 kb on + strand, within BBR_RS14210at 964.448 kb on - strand, within BBR_RS14210at 964.526 kb on - strand, within BBR_RS14210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction mouse 3; day 1; diet=StandardDiet; sample=FecalPellet
remove
959,444 + BBR_RS14190 0.70 -3.7
959,444 - BBR_RS14190 0.70 -4.7
959,450 + BBR_RS14190 0.71 -1.3
959,452 - BBR_RS14190 0.71 -3.8
959,481 - BBR_RS14190 0.73 -2.4
959,491 - BBR_RS14190 0.74 -4.2
959,527 - BBR_RS14190 0.77 -3.9
959,575 + BBR_RS14190 0.80 -2.5
959,597 + BBR_RS14190 0.82 -3.2
959,597 + BBR_RS14190 0.82 -4.1
959,605 - BBR_RS14190 0.83 -2.6
959,612 + BBR_RS14190 0.83 +3.0
959,620 - BBR_RS14190 0.84 -3.7
959,637 - BBR_RS14190 0.85 -0.7
959,652 - BBR_RS14190 0.86 -3.8
959,688 - BBR_RS14190 0.89 -0.8
959,735 - -2.9
959,758 - -3.0
959,908 - +1.5
959,929 - +0.6
959,932 + +0.1
959,964 - +1.5
960,142 + BBR_RS14200 0.15 -0.6
960,142 + BBR_RS14200 0.15 -3.4
960,150 - BBR_RS14200 0.17 -0.5
960,154 + BBR_RS14200 0.19 -2.6
960,154 + BBR_RS14200 0.19 +0.1
960,162 - BBR_RS14200 0.21 -2.0
960,162 - BBR_RS14200 0.21 -1.4
960,195 + BBR_RS14200 0.32 -1.4
960,205 + BBR_RS14200 0.36 +1.4
960,342 + BBR_RS14200 0.81 -2.9
960,350 - BBR_RS14200 0.84 +2.2
960,379 + -0.4
960,397 + -1.2
960,439 - -1.1
960,516 + -0.9
960,946 - BBR_RS14205 0.16 +1.4
961,366 + BBR_RS14205 0.30 +0.4
961,838 - BBR_RS14205 0.45 +1.4
962,195 - BBR_RS14205 0.57 +1.4
962,742 - BBR_RS14205 0.74 +1.4
962,794 + BBR_RS14205 0.76 -1.6
962,802 - BBR_RS14205 0.76 +1.4
962,827 + BBR_RS14205 0.77 -4.6
962,830 + BBR_RS14205 0.77 -4.5
962,836 + BBR_RS14205 0.77 -1.9
962,946 + BBR_RS14205 0.81 -0.9
963,245 + +1.4
963,275 - +1.4
963,383 + -1.7
963,391 + -0.2
963,391 + +0.8
963,392 + -0.0
963,399 - -3.9
963,414 + -2.6
963,422 - -2.6
963,456 - -3.6
963,483 - -1.6
963,495 + -1.1
963,516 + -0.8
963,555 + +1.2
963,709 - BBR_RS14210 0.11 +1.4
963,993 - BBR_RS14210 0.30 +1.4
964,075 + BBR_RS14210 0.35 +1.4
964,448 - BBR_RS14210 0.59 +1.4
964,526 - BBR_RS14210 0.64 +1.4

Or see this region's nucleotide sequence