Experiment: mouse 3; day 1; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13630 and BBR_RS13635 are separated by 1 nucleotides BBR_RS13635 and BBR_RS13640 overlap by 1 nucleotides BBR_RS13640 and BBR_RS13645 are separated by 36 nucleotides
BBR_RS13630: BBR_RS13630 - carbamoyl-phosphate synthase small subunit, at 829,917 to 831,140
_RS13630
BBR_RS13635: BBR_RS13635 - carbamoyl-phosphate synthase large subunit, at 831,142 to 834,525
_RS13635
BBR_RS13640: BBR_RS13640 - orotidine-5'-phosphate decarboxylase, at 834,525 to 835,445
_RS13640
BBR_RS13645: BBR_RS13645 - guanylate kinase, at 835,482 to 836,072
_RS13645
Position (kb) 831
832
833
834
835 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 830.165 kb on + strand, within BBR_RS13630 at 830.180 kb on + strand, within BBR_RS13630 at 830.194 kb on + strand, within BBR_RS13630 at 830.334 kb on + strand, within BBR_RS13630 at 830.393 kb on + strand, within BBR_RS13630 at 830.393 kb on + strand, within BBR_RS13630 at 830.401 kb on - strand, within BBR_RS13630 at 830.448 kb on + strand, within BBR_RS13630 at 830.449 kb on + strand, within BBR_RS13630 at 830.449 kb on + strand, within BBR_RS13630 at 830.483 kb on + strand, within BBR_RS13630 at 830.491 kb on + strand, within BBR_RS13630 at 830.493 kb on + strand, within BBR_RS13630 at 830.687 kb on - strand, within BBR_RS13630 at 830.751 kb on + strand, within BBR_RS13630 at 830.871 kb on + strand, within BBR_RS13630 at 830.871 kb on + strand, within BBR_RS13630 at 830.879 kb on - strand, within BBR_RS13630 at 830.879 kb on - strand, within BBR_RS13630 at 831.006 kb on + strand, within BBR_RS13630 at 831.014 kb on - strand, within BBR_RS13630 at 831.016 kb on + strand, within BBR_RS13630 at 831.097 kb on - strand at 831.114 kb on + strand at 831.140 kb on - strand at 831.300 kb on + strand at 831.420 kb on + strand at 831.497 kb on + strand, within BBR_RS13635 at 831.532 kb on - strand, within BBR_RS13635 at 831.593 kb on + strand, within BBR_RS13635 at 831.593 kb on + strand, within BBR_RS13635 at 831.601 kb on - strand, within BBR_RS13635 at 831.601 kb on - strand, within BBR_RS13635 at 831.601 kb on - strand, within BBR_RS13635 at 831.601 kb on - strand, within BBR_RS13635 at 831.601 kb on - strand, within BBR_RS13635 at 831.899 kb on + strand, within BBR_RS13635 at 831.922 kb on + strand, within BBR_RS13635 at 832.008 kb on + strand, within BBR_RS13635 at 832.045 kb on - strand, within BBR_RS13635 at 832.164 kb on + strand, within BBR_RS13635 at 832.255 kb on + strand, within BBR_RS13635 at 832.340 kb on + strand, within BBR_RS13635 at 832.348 kb on - strand, within BBR_RS13635 at 832.410 kb on + strand, within BBR_RS13635 at 832.447 kb on + strand, within BBR_RS13635 at 832.452 kb on + strand, within BBR_RS13635 at 832.555 kb on + strand, within BBR_RS13635 at 832.716 kb on + strand, within BBR_RS13635 at 832.734 kb on - strand, within BBR_RS13635 at 832.769 kb on + strand, within BBR_RS13635 at 832.863 kb on - strand, within BBR_RS13635 at 832.863 kb on - strand, within BBR_RS13635 at 832.863 kb on - strand, within BBR_RS13635 at 832.941 kb on + strand, within BBR_RS13635 at 832.941 kb on + strand, within BBR_RS13635 at 832.970 kb on + strand, within BBR_RS13635 at 833.133 kb on + strand, within BBR_RS13635 at 833.150 kb on + strand, within BBR_RS13635 at 833.218 kb on + strand, within BBR_RS13635 at 833.230 kb on + strand, within BBR_RS13635 at 833.230 kb on + strand, within BBR_RS13635 at 833.233 kb on - strand, within BBR_RS13635 at 833.379 kb on + strand, within BBR_RS13635 at 833.488 kb on + strand, within BBR_RS13635 at 833.512 kb on - strand, within BBR_RS13635 at 833.552 kb on + strand, within BBR_RS13635 at 833.597 kb on - strand, within BBR_RS13635 at 833.610 kb on + strand, within BBR_RS13635 at 833.649 kb on + strand, within BBR_RS13635 at 833.656 kb on + strand, within BBR_RS13635 at 833.717 kb on + strand, within BBR_RS13635 at 833.717 kb on + strand, within BBR_RS13635 at 833.832 kb on + strand, within BBR_RS13635 at 833.833 kb on + strand, within BBR_RS13635 at 833.892 kb on + strand, within BBR_RS13635 at 833.937 kb on + strand, within BBR_RS13635 at 833.942 kb on + strand, within BBR_RS13635 at 833.974 kb on + strand, within BBR_RS13635 at 833.975 kb on - strand, within BBR_RS13635 at 834.110 kb on + strand, within BBR_RS13635 at 834.125 kb on + strand, within BBR_RS13635 at 834.219 kb on - strand at 834.450 kb on + strand at 834.519 kb on + strand at 834.657 kb on + strand, within BBR_RS13640 at 834.679 kb on + strand, within BBR_RS13640 at 834.679 kb on + strand, within BBR_RS13640 at 834.679 kb on + strand, within BBR_RS13640 at 834.786 kb on + strand, within BBR_RS13640 at 834.800 kb on + strand, within BBR_RS13640 at 834.800 kb on + strand, within BBR_RS13640 at 834.800 kb on + strand, within BBR_RS13640 at 834.813 kb on + strand, within BBR_RS13640 at 834.815 kb on + strand, within BBR_RS13640 at 834.822 kb on + strand, within BBR_RS13640 at 834.834 kb on + strand, within BBR_RS13640 at 834.893 kb on + strand, within BBR_RS13640 at 834.893 kb on + strand, within BBR_RS13640 at 835.021 kb on + strand, within BBR_RS13640 at 835.036 kb on + strand, within BBR_RS13640 at 835.121 kb on + strand, within BBR_RS13640 at 835.141 kb on + strand, within BBR_RS13640 at 835.156 kb on + strand, within BBR_RS13640 at 835.174 kb on + strand, within BBR_RS13640 at 835.200 kb on + strand, within BBR_RS13640 at 835.281 kb on + strand, within BBR_RS13640 at 835.448 kb on - strand at 835.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction mouse 3; day 1; diet=StandardDiet; sample=FecalPellet remove 830,165 + BBR_RS13630 0.20 -2.4 830,180 + BBR_RS13630 0.21 -1.2 830,194 + BBR_RS13630 0.23 -1.0 830,334 + BBR_RS13630 0.34 +0.3 830,393 + BBR_RS13630 0.39 -2.0 830,393 + BBR_RS13630 0.39 -1.0 830,401 - BBR_RS13630 0.40 -0.7 830,448 + BBR_RS13630 0.43 -1.8 830,449 + BBR_RS13630 0.43 -0.7 830,449 + BBR_RS13630 0.43 -0.2 830,483 + BBR_RS13630 0.46 +0.3 830,491 + BBR_RS13630 0.47 -1.5 830,493 + BBR_RS13630 0.47 +1.7 830,687 - BBR_RS13630 0.63 -1.0 830,751 + BBR_RS13630 0.68 -1.2 830,871 + BBR_RS13630 0.78 -0.2 830,871 + BBR_RS13630 0.78 +0.3 830,879 - BBR_RS13630 0.79 -1.0 830,879 - BBR_RS13630 0.79 -0.7 831,006 + BBR_RS13630 0.89 -1.7 831,014 - BBR_RS13630 0.90 -0.7 831,016 + BBR_RS13630 0.90 -2.8 831,097 - -0.7 831,114 + +0.6 831,140 - +1.3 831,300 + -2.6 831,420 + +0.3 831,497 + BBR_RS13635 0.10 -2.0 831,532 - BBR_RS13635 0.12 +1.3 831,593 + BBR_RS13635 0.13 +0.3 831,593 + BBR_RS13635 0.13 -1.0 831,601 - BBR_RS13635 0.14 -0.2 831,601 - BBR_RS13635 0.14 -1.7 831,601 - BBR_RS13635 0.14 +0.3 831,601 - BBR_RS13635 0.14 -1.0 831,601 - BBR_RS13635 0.14 -0.7 831,899 + BBR_RS13635 0.22 -0.2 831,922 + BBR_RS13635 0.23 +0.3 832,008 + BBR_RS13635 0.26 +0.3 832,045 - BBR_RS13635 0.27 -1.0 832,164 + BBR_RS13635 0.30 -4.0 832,255 + BBR_RS13635 0.33 -2.0 832,340 + BBR_RS13635 0.35 -0.7 832,348 - BBR_RS13635 0.36 +0.3 832,410 + BBR_RS13635 0.37 -1.2 832,447 + BBR_RS13635 0.39 -1.8 832,452 + BBR_RS13635 0.39 -0.7 832,555 + BBR_RS13635 0.42 -2.0 832,716 + BBR_RS13635 0.47 -2.0 832,734 - BBR_RS13635 0.47 -0.7 832,769 + BBR_RS13635 0.48 -0.7 832,863 - BBR_RS13635 0.51 +1.3 832,863 - BBR_RS13635 0.51 -0.7 832,863 - BBR_RS13635 0.51 -0.2 832,941 + BBR_RS13635 0.53 -1.5 832,941 + BBR_RS13635 0.53 -2.8 832,970 + BBR_RS13635 0.54 -1.8 833,133 + BBR_RS13635 0.59 -1.0 833,150 + BBR_RS13635 0.59 -0.7 833,218 + BBR_RS13635 0.61 +0.3 833,230 + BBR_RS13635 0.62 +0.3 833,230 + BBR_RS13635 0.62 -1.5 833,233 - BBR_RS13635 0.62 -1.0 833,379 + BBR_RS13635 0.66 -1.2 833,488 + BBR_RS13635 0.69 -2.7 833,512 - BBR_RS13635 0.70 +0.3 833,552 + BBR_RS13635 0.71 -1.2 833,597 - BBR_RS13635 0.73 -0.2 833,610 + BBR_RS13635 0.73 -1.7 833,649 + BBR_RS13635 0.74 -1.2 833,656 + BBR_RS13635 0.74 -1.5 833,717 + BBR_RS13635 0.76 +0.3 833,717 + BBR_RS13635 0.76 -0.7 833,832 + BBR_RS13635 0.79 -1.7 833,833 + BBR_RS13635 0.80 -1.0 833,892 + BBR_RS13635 0.81 -0.2 833,937 + BBR_RS13635 0.83 -1.5 833,942 + BBR_RS13635 0.83 -0.2 833,974 + BBR_RS13635 0.84 -1.0 833,975 - BBR_RS13635 0.84 -0.2 834,110 + BBR_RS13635 0.88 -0.2 834,125 + BBR_RS13635 0.88 -2.5 834,219 - +0.3 834,450 + -1.0 834,519 + -2.6 834,657 + BBR_RS13640 0.14 -1.3 834,679 + BBR_RS13640 0.17 -0.3 834,679 + BBR_RS13640 0.17 -4.4 834,679 + BBR_RS13640 0.17 -3.9 834,786 + BBR_RS13640 0.28 -4.8 834,800 + BBR_RS13640 0.30 -1.2 834,800 + BBR_RS13640 0.30 -1.0 834,800 + BBR_RS13640 0.30 +0.1 834,813 + BBR_RS13640 0.31 -4.4 834,815 + BBR_RS13640 0.31 -0.5 834,822 + BBR_RS13640 0.32 -4.4 834,834 + BBR_RS13640 0.34 -0.2 834,893 + BBR_RS13640 0.40 +1.2 834,893 + BBR_RS13640 0.40 -3.2 835,021 + BBR_RS13640 0.54 -3.4 835,036 + BBR_RS13640 0.55 -3.9 835,121 + BBR_RS13640 0.65 +0.4 835,141 + BBR_RS13640 0.67 +0.9 835,156 + BBR_RS13640 0.69 -0.6 835,174 + BBR_RS13640 0.70 +0.1 835,200 + BBR_RS13640 0.73 -0.5 835,281 + BBR_RS13640 0.82 -0.8 835,448 - -0.2 835,493 + -0.7
Or see this region's nucleotide sequence