Experiment: mouse 3; day 1; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13365 and BBR_RS13370 are separated by 376 nucleotides BBR_RS13370 and BBR_RS13375 are separated by 26 nucleotides
BBR_RS13365: BBR_RS13365 - aldehyde dehydrogenase family protein, at 770,576 to 772,135
_RS13365
BBR_RS13370: BBR_RS13370 - phosphoribosylamine--glycine ligase, at 772,512 to 773,780
_RS13370
BBR_RS13375: BBR_RS13375 - phosphoribosylformylglycinamidine cyclo-ligase, at 773,807 to 774,844
_RS13375
Position (kb) 772
773
774 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 771.569 kb on - strand, within BBR_RS13365 at 771.667 kb on - strand, within BBR_RS13365 at 771.704 kb on - strand, within BBR_RS13365 at 771.715 kb on + strand, within BBR_RS13365 at 771.861 kb on + strand, within BBR_RS13365 at 771.861 kb on + strand, within BBR_RS13365 at 771.879 kb on + strand, within BBR_RS13365 at 771.887 kb on + strand, within BBR_RS13365 at 771.992 kb on - strand at 772.014 kb on + strand at 772.024 kb on + strand at 772.052 kb on - strand at 772.070 kb on - strand at 772.193 kb on - strand at 772.391 kb on - strand at 772.393 kb on + strand at 772.395 kb on + strand at 772.400 kb on + strand at 772.417 kb on + strand at 772.419 kb on + strand at 772.419 kb on + strand at 772.419 kb on + strand at 772.425 kb on - strand at 772.425 kb on - strand at 772.425 kb on - strand at 772.425 kb on - strand at 772.435 kb on + strand at 772.514 kb on + strand at 772.514 kb on + strand at 773.309 kb on + strand, within BBR_RS13370 at 773.415 kb on - strand, within BBR_RS13370 at 773.415 kb on - strand, within BBR_RS13370 at 773.590 kb on - strand, within BBR_RS13370 at 773.594 kb on + strand, within BBR_RS13370 at 773.620 kb on - strand, within BBR_RS13370 at 773.644 kb on - strand, within BBR_RS13370 at 773.710 kb on + strand at 773.854 kb on - strand at 773.932 kb on - strand, within BBR_RS13375 at 773.932 kb on - strand, within BBR_RS13375 at 773.966 kb on - strand, within BBR_RS13375 at 774.101 kb on + strand, within BBR_RS13375 at 774.122 kb on - strand, within BBR_RS13375 at 774.124 kb on + strand, within BBR_RS13375 at 774.137 kb on - strand, within BBR_RS13375 at 774.137 kb on - strand, within BBR_RS13375 at 774.164 kb on - strand, within BBR_RS13375 at 774.166 kb on + strand, within BBR_RS13375 at 774.232 kb on - strand, within BBR_RS13375 at 774.256 kb on - strand, within BBR_RS13375 at 774.284 kb on - strand, within BBR_RS13375 at 774.284 kb on - strand, within BBR_RS13375 at 774.435 kb on + strand, within BBR_RS13375 at 774.453 kb on - strand, within BBR_RS13375 at 774.491 kb on - strand, within BBR_RS13375 at 774.558 kb on - strand, within BBR_RS13375 at 774.679 kb on - strand, within BBR_RS13375
Per-strain Table
Position Strand Gene LocusTag Fraction mouse 3; day 1; diet=StandardDiet; sample=FecalPellet remove 771,569 - BBR_RS13365 0.64 -1.2 771,667 - BBR_RS13365 0.70 +1.0 771,704 - BBR_RS13365 0.72 -1.3 771,715 + BBR_RS13365 0.73 -0.5 771,861 + BBR_RS13365 0.82 +0.9 771,861 + BBR_RS13365 0.82 +0.2 771,879 + BBR_RS13365 0.84 +0.0 771,887 + BBR_RS13365 0.84 -2.6 771,992 - -1.0 772,014 + +0.8 772,024 + +0.9 772,052 - -1.4 772,070 - +0.8 772,193 - +0.2 772,391 - +1.1 772,393 + +0.2 772,395 + -1.1 772,400 + -0.3 772,417 + +2.0 772,419 + +0.3 772,419 + -3.6 772,419 + -0.6 772,425 - +0.8 772,425 - +0.3 772,425 - +0.1 772,425 - +0.8 772,435 + +0.4 772,514 + -2.1 772,514 + -2.5 773,309 + BBR_RS13370 0.63 -2.0 773,415 - BBR_RS13370 0.71 -3.0 773,415 - BBR_RS13370 0.71 -1.5 773,590 - BBR_RS13370 0.85 -1.0 773,594 + BBR_RS13370 0.85 -1.5 773,620 - BBR_RS13370 0.87 -2.0 773,644 - BBR_RS13370 0.89 -0.2 773,710 + -1.5 773,854 - -4.6 773,932 - BBR_RS13375 0.12 -4.4 773,932 - BBR_RS13375 0.12 -3.4 773,966 - BBR_RS13375 0.15 -4.2 774,101 + BBR_RS13375 0.28 +0.4 774,122 - BBR_RS13375 0.30 -1.6 774,124 + BBR_RS13375 0.31 -0.6 774,137 - BBR_RS13375 0.32 -3.5 774,137 - BBR_RS13375 0.32 -2.8 774,164 - BBR_RS13375 0.34 -2.1 774,166 + BBR_RS13375 0.35 -3.0 774,232 - BBR_RS13375 0.41 -2.2 774,256 - BBR_RS13375 0.43 -2.7 774,284 - BBR_RS13375 0.46 -2.5 774,284 - BBR_RS13375 0.46 -3.8 774,435 + BBR_RS13375 0.61 -3.5 774,453 - BBR_RS13375 0.62 -3.5 774,491 - BBR_RS13375 0.66 -3.9 774,558 - BBR_RS13375 0.72 -3.6 774,679 - BBR_RS13375 0.84 -3.2
Or see this region's nucleotide sequence