Experiment: mouse 3; day 1; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12540 and BBR_RS12545 are separated by 367 nucleotides BBR_RS12545 and BBR_RS12550 are separated by 93 nucleotides
BBR_RS12540: BBR_RS12540 - MFS transporter, at 569,338 to 570,936
_RS12540
BBR_RS12545: BBR_RS12545 - DUF4012 domain-containing protein, at 571,304 to 573,064
_RS12545
BBR_RS12550: BBR_RS12550 - sugar transferase, at 573,158 to 574,876
_RS12550
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 570.308 kb on + strand, within BBR_RS12540 at 570.319 kb on - strand, within BBR_RS12540 at 570.341 kb on - strand, within BBR_RS12540 at 570.350 kb on + strand, within BBR_RS12540 at 570.423 kb on + strand, within BBR_RS12540 at 570.423 kb on + strand, within BBR_RS12540 at 570.437 kb on + strand, within BBR_RS12540 at 570.437 kb on + strand, within BBR_RS12540 at 570.445 kb on - strand, within BBR_RS12540 at 570.445 kb on - strand, within BBR_RS12540 at 570.445 kb on - strand, within BBR_RS12540 at 570.446 kb on + strand, within BBR_RS12540 at 570.487 kb on - strand, within BBR_RS12540 at 570.502 kb on + strand, within BBR_RS12540 at 570.507 kb on - strand, within BBR_RS12540 at 570.512 kb on + strand, within BBR_RS12540 at 570.512 kb on + strand, within BBR_RS12540 at 570.512 kb on + strand, within BBR_RS12540 at 570.515 kb on - strand, within BBR_RS12540 at 570.517 kb on + strand, within BBR_RS12540 at 570.525 kb on - strand, within BBR_RS12540 at 570.525 kb on - strand, within BBR_RS12540 at 570.548 kb on + strand, within BBR_RS12540 at 570.571 kb on + strand, within BBR_RS12540 at 570.576 kb on + strand, within BBR_RS12540 at 570.576 kb on + strand, within BBR_RS12540 at 570.686 kb on + strand, within BBR_RS12540 at 570.695 kb on + strand, within BBR_RS12540 at 570.699 kb on - strand, within BBR_RS12540 at 570.720 kb on + strand, within BBR_RS12540 at 570.720 kb on + strand, within BBR_RS12540 at 570.837 kb on + strand at 570.853 kb on - strand at 570.880 kb on + strand at 570.881 kb on - strand at 570.888 kb on - strand at 570.888 kb on - strand at 570.888 kb on - strand at 570.919 kb on + strand at 570.940 kb on + strand at 570.940 kb on - strand at 570.940 kb on - strand at 570.946 kb on - strand at 571.007 kb on - strand at 571.060 kb on + strand at 571.060 kb on - strand at 571.088 kb on + strand at 571.088 kb on + strand at 571.088 kb on + strand at 571.096 kb on - strand at 571.102 kb on + strand at 571.102 kb on + strand at 571.102 kb on + strand at 571.102 kb on + strand at 571.102 kb on + strand at 571.103 kb on + strand at 571.103 kb on - strand at 571.103 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.122 kb on + strand at 571.131 kb on + strand at 571.168 kb on - strand at 571.193 kb on - strand at 571.211 kb on - strand at 571.211 kb on - strand at 571.211 kb on - strand at 571.211 kb on - strand at 571.464 kb on + strand at 571.464 kb on - strand at 571.464 kb on - strand at 571.500 kb on + strand, within BBR_RS12545 at 571.534 kb on + strand, within BBR_RS12545 at 571.615 kb on + strand, within BBR_RS12545 at 571.783 kb on + strand, within BBR_RS12545 at 571.813 kb on + strand, within BBR_RS12545 at 571.923 kb on + strand, within BBR_RS12545 at 571.937 kb on + strand, within BBR_RS12545 at 571.979 kb on + strand, within BBR_RS12545 at 572.177 kb on - strand, within BBR_RS12545 at 572.304 kb on + strand, within BBR_RS12545 at 572.350 kb on + strand, within BBR_RS12545 at 572.497 kb on + strand, within BBR_RS12545 at 572.543 kb on + strand, within BBR_RS12545 at 572.543 kb on - strand, within BBR_RS12545 at 572.604 kb on + strand, within BBR_RS12545 at 572.919 kb on + strand at 572.954 kb on + strand at 572.962 kb on + strand at 572.969 kb on - strand at 573.012 kb on - strand at 573.015 kb on + strand at 573.036 kb on + strand at 573.084 kb on - strand at 573.084 kb on - strand at 573.086 kb on + strand at 573.098 kb on + strand at 573.106 kb on - strand at 573.108 kb on - strand at 573.131 kb on - strand at 573.147 kb on - strand at 573.158 kb on + strand at 573.166 kb on - strand at 573.166 kb on - strand at 573.166 kb on - strand at 573.166 kb on - strand at 573.243 kb on - strand at 573.265 kb on + strand at 573.273 kb on - strand at 573.273 kb on - strand at 573.304 kb on + strand at 573.309 kb on + strand at 573.336 kb on + strand, within BBR_RS12550 at 573.361 kb on - strand, within BBR_RS12550 at 573.361 kb on - strand, within BBR_RS12550 at 573.366 kb on - strand, within BBR_RS12550 at 573.371 kb on - strand, within BBR_RS12550 at 573.375 kb on + strand, within BBR_RS12550 at 573.418 kb on - strand, within BBR_RS12550 at 573.418 kb on - strand, within BBR_RS12550 at 573.500 kb on - strand, within BBR_RS12550 at 573.594 kb on + strand, within BBR_RS12550 at 573.622 kb on - strand, within BBR_RS12550 at 573.642 kb on + strand, within BBR_RS12550 at 573.642 kb on + strand, within BBR_RS12550 at 573.648 kb on + strand, within BBR_RS12550 at 573.648 kb on + strand, within BBR_RS12550 at 573.665 kb on - strand, within BBR_RS12550 at 573.723 kb on - strand, within BBR_RS12550 at 573.738 kb on + strand, within BBR_RS12550 at 573.764 kb on + strand, within BBR_RS12550 at 573.769 kb on + strand, within BBR_RS12550 at 573.828 kb on - strand, within BBR_RS12550 at 573.830 kb on + strand, within BBR_RS12550 at 573.833 kb on + strand, within BBR_RS12550 at 573.838 kb on - strand, within BBR_RS12550 at 573.843 kb on - strand, within BBR_RS12550 at 573.875 kb on + strand, within BBR_RS12550 at 573.875 kb on + strand, within BBR_RS12550 at 573.895 kb on + strand, within BBR_RS12550 at 573.935 kb on + strand, within BBR_RS12550 at 573.943 kb on - strand, within BBR_RS12550 at 573.961 kb on + strand, within BBR_RS12550 at 574.052 kb on + strand, within BBR_RS12550
Per-strain Table
Position Strand Gene LocusTag Fraction mouse 3; day 1; diet=StandardDiet; sample=FecalPellet remove 570,308 + BBR_RS12540 0.61 +1.0 570,319 - BBR_RS12540 0.61 +0.4 570,341 - BBR_RS12540 0.63 -0.3 570,350 + BBR_RS12540 0.63 -0.3 570,423 + BBR_RS12540 0.68 -2.0 570,423 + BBR_RS12540 0.68 +0.3 570,437 + BBR_RS12540 0.69 -1.5 570,437 + BBR_RS12540 0.69 +0.1 570,445 - BBR_RS12540 0.69 +1.2 570,445 - BBR_RS12540 0.69 +0.4 570,445 - BBR_RS12540 0.69 +1.1 570,446 + BBR_RS12540 0.69 +0.4 570,487 - BBR_RS12540 0.72 -3.2 570,502 + BBR_RS12540 0.73 +0.8 570,507 - BBR_RS12540 0.73 +0.6 570,512 + BBR_RS12540 0.73 +0.4 570,512 + BBR_RS12540 0.73 -1.1 570,512 + BBR_RS12540 0.73 +0.8 570,515 - BBR_RS12540 0.74 +0.5 570,517 + BBR_RS12540 0.74 +0.6 570,525 - BBR_RS12540 0.74 +1.0 570,525 - BBR_RS12540 0.74 +2.1 570,548 + BBR_RS12540 0.76 +1.7 570,571 + BBR_RS12540 0.77 +1.1 570,576 + BBR_RS12540 0.77 -1.3 570,576 + BBR_RS12540 0.77 +1.9 570,686 + BBR_RS12540 0.84 -0.9 570,695 + BBR_RS12540 0.85 +0.5 570,699 - BBR_RS12540 0.85 +1.5 570,720 + BBR_RS12540 0.86 +1.1 570,720 + BBR_RS12540 0.86 +0.8 570,837 + +1.3 570,853 - -1.2 570,880 + +0.4 570,881 - +0.7 570,888 - +0.5 570,888 - +1.1 570,888 - +1.1 570,919 + +0.9 570,940 + -0.3 570,940 - +1.4 570,940 - +0.7 570,946 - +0.4 571,007 - -0.0 571,060 + -1.2 571,060 - -2.0 571,088 + -0.9 571,088 + +1.1 571,088 + -3.6 571,096 - +2.2 571,102 + -0.3 571,102 + -1.1 571,102 + +0.5 571,102 + -1.3 571,102 + -4.4 571,103 + +0.7 571,103 - +1.0 571,103 - +0.3 571,110 - +0.4 571,110 - +0.8 571,110 - +0.9 571,110 - -1.8 571,110 - -1.2 571,110 - +0.5 571,110 - +0.2 571,122 + +0.9 571,131 + +0.9 571,168 - +0.1 571,193 - -0.5 571,211 - -2.6 571,211 - -1.5 571,211 - +0.8 571,211 - -0.5 571,464 + -1.7 571,464 - -0.3 571,464 - -1.3 571,500 + BBR_RS12545 0.11 -1.3 571,534 + BBR_RS12545 0.13 -2.8 571,615 + BBR_RS12545 0.18 +0.3 571,783 + BBR_RS12545 0.27 -1.9 571,813 + BBR_RS12545 0.29 +1.3 571,923 + BBR_RS12545 0.35 +0.1 571,937 + BBR_RS12545 0.36 -2.0 571,979 + BBR_RS12545 0.38 -2.3 572,177 - BBR_RS12545 0.50 -2.5 572,304 + BBR_RS12545 0.57 -2.2 572,350 + BBR_RS12545 0.59 -3.8 572,497 + BBR_RS12545 0.68 -2.2 572,543 + BBR_RS12545 0.70 -1.3 572,543 - BBR_RS12545 0.70 -3.1 572,604 + BBR_RS12545 0.74 -3.2 572,919 + -3.9 572,954 + -2.3 572,962 + +2.7 572,969 - -1.3 573,012 - -0.9 573,015 + -0.6 573,036 + -0.3 573,084 - -0.5 573,084 - -0.0 573,086 + +1.6 573,098 + -0.2 573,106 - -4.2 573,108 - -0.7 573,131 - +0.2 573,147 - +0.5 573,158 + -1.5 573,166 - -0.5 573,166 - -0.2 573,166 - -0.6 573,166 - -1.0 573,243 - -5.1 573,265 + -4.2 573,273 - -4.5 573,273 - +0.1 573,304 + -4.6 573,309 + -2.3 573,336 + BBR_RS12550 0.10 -1.5 573,361 - BBR_RS12550 0.12 -3.1 573,361 - BBR_RS12550 0.12 -3.6 573,366 - BBR_RS12550 0.12 -1.6 573,371 - BBR_RS12550 0.12 -5.7 573,375 + BBR_RS12550 0.13 -3.6 573,418 - BBR_RS12550 0.15 -4.4 573,418 - BBR_RS12550 0.15 -1.3 573,500 - BBR_RS12550 0.20 -0.9 573,594 + BBR_RS12550 0.25 -4.7 573,622 - BBR_RS12550 0.27 -0.2 573,642 + BBR_RS12550 0.28 -3.4 573,642 + BBR_RS12550 0.28 -3.7 573,648 + BBR_RS12550 0.29 -3.5 573,648 + BBR_RS12550 0.29 -3.6 573,665 - BBR_RS12550 0.29 +0.2 573,723 - BBR_RS12550 0.33 -3.9 573,738 + BBR_RS12550 0.34 -3.6 573,764 + BBR_RS12550 0.35 -2.5 573,769 + BBR_RS12550 0.36 -3.6 573,828 - BBR_RS12550 0.39 -2.9 573,830 + BBR_RS12550 0.39 -1.3 573,833 + BBR_RS12550 0.39 -1.6 573,838 - BBR_RS12550 0.40 -0.9 573,843 - BBR_RS12550 0.40 -3.9 573,875 + BBR_RS12550 0.42 -3.6 573,875 + BBR_RS12550 0.42 -1.2 573,895 + BBR_RS12550 0.43 -4.0 573,935 + BBR_RS12550 0.45 -3.0 573,943 - BBR_RS12550 0.46 -3.9 573,961 + BBR_RS12550 0.47 +0.8 574,052 + BBR_RS12550 0.52 -4.2
Or see this region's nucleotide sequence