Experiment: mouse 3; day 1; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10255 and BBR_RS20555 are separated by 65 nucleotides BBR_RS20555 and BBR_RS10260 are separated by 104 nucleotides
BBR_RS10255: BBR_RS10255 - chromosomal replication initiator protein DnaA, at 1 to 1,467
_RS10255
BBR_RS20555: BBR_RS20555 - hypothetical protein, at 1,533 to 1,938
_RS20555
BBR_RS10260: BBR_RS10260 - DNA polymerase III subunit beta, at 2,043 to 3,167
_RS10260
Position (kb) 0
1
2 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 0.021 kb on + strand at 0.168 kb on + strand, within BBR_RS10255 at 0.168 kb on + strand, within BBR_RS10255 at 0.168 kb on + strand, within BBR_RS10255 at 0.238 kb on + strand, within BBR_RS10255 at 0.291 kb on + strand, within BBR_RS10255 at 1.462 kb on + strand at 1.466 kb on + strand at 1.466 kb on + strand at 1.466 kb on + strand at 1.466 kb on + strand at 1.466 kb on + strand at 1.466 kb on + strand at 1.466 kb on + strand at 1.466 kb on + strand at 1.470 kb on - strand at 1.472 kb on + strand at 1.474 kb on - strand at 1.474 kb on - strand at 1.474 kb on - strand at 1.474 kb on - strand at 1.474 kb on - strand at 1.474 kb on - strand at 1.480 kb on - strand at 1.480 kb on - strand at 1.480 kb on - strand at 1.510 kb on + strand at 1.518 kb on - strand at 1.518 kb on - strand at 1.578 kb on + strand, within BBR_RS20555 at 1.622 kb on + strand, within BBR_RS20555 at 1.630 kb on - strand, within BBR_RS20555 at 1.630 kb on - strand, within BBR_RS20555 at 1.966 kb on + strand at 2.031 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction mouse 3; day 1; diet=StandardDiet; sample=FecalPellet remove 21 + -6.1 168 + BBR_RS10255 0.11 -3.0 168 + BBR_RS10255 0.11 -3.3 168 + BBR_RS10255 0.11 -2.6 238 + BBR_RS10255 0.16 -3.2 291 + BBR_RS10255 0.20 -4.7 1,462 + -0.9 1,466 + +0.8 1,466 + +1.2 1,466 + -0.6 1,466 + -0.8 1,466 + -1.3 1,466 + -0.2 1,466 + -2.0 1,466 + +0.5 1,470 - +0.1 1,472 + -0.9 1,474 - -0.1 1,474 - -0.9 1,474 - +1.0 1,474 - -0.3 1,474 - -1.3 1,474 - +2.2 1,480 - -1.7 1,480 - -3.9 1,480 - -0.7 1,510 + +0.6 1,518 - -2.9 1,518 - +0.3 1,578 + BBR_RS20555 0.11 -0.3 1,622 + BBR_RS20555 0.22 +0.6 1,630 - BBR_RS20555 0.24 +0.3 1,630 - BBR_RS20555 0.24 +1.1 1,966 + +0.2 2,031 + -0.8
Or see this region's nucleotide sequence