Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19825

Experiment: mouse 1; day 1; diet=StandardDiet; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mouse 1; day 1; diet=StandardDiet; sample=FecalPellet
2,242,009	-		BBR_RS19820	0.49	+1.0
2,242,009	-		BBR_RS19820	0.49	-2.4
2,242,011	+		BBR_RS19820	0.49	+1.2
2,242,034	+		BBR_RS19820	0.51	+0.5
2,242,034	+		BBR_RS19820	0.51	+0.2
2,242,034	+		BBR_RS19820	0.51	+0.9
2,242,034	+		BBR_RS19820	0.51	-0.3
2,242,034	+		BBR_RS19820	0.51	+0.1
2,242,034	+		BBR_RS19820	0.51	+1.8
2,242,039	+		BBR_RS19820	0.51	+0.9
2,242,039	+		BBR_RS19820	0.51	+0.8
2,242,041	+		BBR_RS19820	0.51	-0.4
2,242,041	+		BBR_RS19820	0.51	+0.1
2,242,042	-		BBR_RS19820	0.52	+1.8
2,242,042	-		BBR_RS19820	0.52	-2.0
2,242,042	-		BBR_RS19820	0.52	+0.3
2,242,047	-		BBR_RS19820	0.52	+0.8
2,242,047	-		BBR_RS19820	0.52	+0.3
2,242,047	-		BBR_RS19820	0.52	+0.3
2,242,049	+		BBR_RS19820	0.52	+1.7
2,242,051	+		BBR_RS19820	0.52	-0.2
2,242,071	+		BBR_RS19820	0.54	-1.4
2,242,071	+		BBR_RS19820	0.54	+0.3
2,242,090	+		BBR_RS19820	0.56	-0.2
2,242,090	+		BBR_RS19820	0.56	-0.4
2,242,112	+		BBR_RS19820	0.57	+0.1
2,242,112	+		BBR_RS19820	0.57	+0.4
2,242,125	+		BBR_RS19820	0.59	+1.0
2,242,125	+		BBR_RS19820	0.59	-0.3
2,242,125	+		BBR_RS19820	0.59	-0.0
2,242,125	+		BBR_RS19820	0.59	+1.0
2,242,125	+		BBR_RS19820	0.59	+1.2
2,242,125	+		BBR_RS19820	0.59	+1.7
2,242,125	+		BBR_RS19820	0.59	-2.5
2,242,125	+		BBR_RS19820	0.59	-0.8
2,242,128	-		BBR_RS19820	0.59	+0.5
2,242,133	-		BBR_RS19820	0.59	+0.6
2,242,133	-		BBR_RS19820	0.59	+0.9
2,242,133	-		BBR_RS19820	0.59	-1.1
2,242,133	-		BBR_RS19820	0.59	+0.3
2,242,141	+		BBR_RS19820	0.60	-0.1
2,242,164	-		BBR_RS19820	0.62	-0.6
2,242,164	-		BBR_RS19820	0.62	+0.8
2,242,188	+		BBR_RS19820	0.64	+0.4
2,242,188	+		BBR_RS19820	0.64	+0.7
2,242,196	-		BBR_RS19820	0.65	+1.2
2,242,196	-		BBR_RS19820	0.65	-0.1
2,242,203	+		BBR_RS19820	0.65	-0.6
2,242,216	-		BBR_RS19820	0.66	+1.4
2,242,228	+		BBR_RS19820	0.67	+0.1
2,242,236	-		BBR_RS19820	0.68	+0.2
2,242,236	-		BBR_RS19820	0.68	+0.3
2,242,236	-		BBR_RS19820	0.68	+0.9
2,242,236	-		BBR_RS19820	0.68	+1.0
2,242,238	+		BBR_RS19820	0.68	+0.5
2,242,241	-		BBR_RS19820	0.68	+1.3
2,242,242	+		BBR_RS19820	0.68	+0.4
2,242,242	+		BBR_RS19820	0.68	+2.3
2,242,246	-		BBR_RS19820	0.69	+0.6
2,242,270	+		BBR_RS19820	0.71	+1.0
2,242,278	-		BBR_RS19820	0.71	+1.3
2,242,294	+		BBR_RS19820	0.73	-0.0
2,242,319	+		BBR_RS19820	0.75	+2.5
2,242,326	+		BBR_RS19820	0.76	+0.8
2,242,326	+		BBR_RS19820	0.76	+1.3
2,242,334	-		BBR_RS19820	0.76	+0.8
2,242,334	-		BBR_RS19820	0.76	+0.3
2,242,334	-		BBR_RS19820	0.76	+0.8
2,242,342	-		BBR_RS19820	0.77	+1.4
2,242,353	+		BBR_RS19820	0.78	-0.1
2,242,366	-		BBR_RS19820	0.79	+1.1
2,242,366	-		BBR_RS19820	0.79	+0.7
2,242,371	+		BBR_RS19820	0.79	+0.0
2,242,387	+		BBR_RS19820	0.81	+0.2
2,242,405	-		BBR_RS19820	0.82	+0.6
2,242,405	-		BBR_RS19820	0.82	+0.6
2,242,408	-		BBR_RS19820	0.82	-0.2
2,242,434	+		BBR_RS19820	0.85	-0.5
2,242,458	-		BBR_RS19820	0.87	+1.8
2,242,476	+		BBR_RS19820	0.88	+0.7
2,242,476	+		BBR_RS19820	0.88	+0.1
2,242,476	+		BBR_RS19820	0.88	+0.5
2,242,484	-		BBR_RS19820	0.89	-1.7
2,242,484	-		BBR_RS19820	0.89	-0.8
2,242,496	+		BBR_RS19820	0.90	-0.2
2,242,502	-				-0.9
2,242,547	+				-0.5
2,242,564	-				-0.0
2,242,598	-				+0.5
2,242,598	-				+0.5
2,242,598	-				+0.6
2,242,603	-				+1.0
2,242,633	+				+0.6
2,242,659	-				+0.1
2,242,666	+				-1.4
2,242,669	-				+0.3
2,242,684	+				-0.9
2,242,692	-				-0.6
2,242,692	-				-1.6
2,242,702	+				+0.7
2,242,716	-				+0.4
2,242,725	-				+0.4
2,242,757	-				-0.6
2,242,768	-				+0.7
2,242,805	+				+0.4
2,242,805	+				+1.5
2,242,807	+				+2.2
2,242,894	-				-0.4
2,242,894	-				-1.1
2,242,894	-				+1.6
2,242,907	+				-0.4
2,242,907	+				+1.0
2,242,915	-				-2.3
2,242,915	-				-0.7
2,242,932	+				-0.6
2,242,940	-				+0.1
2,242,940	-				-0.3
2,242,940	-				-1.5
2,242,944	+				+0.0
2,242,947	-				-1.5
2,242,995	+				-1.8
2,242,995	+				-1.5
2,242,995	+				-0.2
2,243,003	-				-1.1
2,243,033	-				-2.9
2,243,053	-		BBR_RS19825	0.10	-2.1
2,243,055	-		BBR_RS19825	0.10	-1.7
2,243,057	-		BBR_RS19825	0.11	-3.6
2,243,122	+		BBR_RS19825	0.19	-0.9
2,243,122	+		BBR_RS19825	0.19	-3.9
2,243,122	+		BBR_RS19825	0.19	-0.6
2,243,122	+		BBR_RS19825	0.19	-0.0
2,243,122	+		BBR_RS19825	0.19	-0.5
2,243,122	+		BBR_RS19825	0.19	-2.2
2,243,130	-		BBR_RS19825	0.20	-1.9
2,243,130	-		BBR_RS19825	0.20	-0.5
2,243,143	+		BBR_RS19825	0.22	+0.1
2,243,151	-		BBR_RS19825	0.23	-3.2
2,243,185	+		BBR_RS19825	0.27	-1.4
2,243,185	+		BBR_RS19825	0.27	-0.4
2,243,193	-		BBR_RS19825	0.28	-1.5
2,243,193	-		BBR_RS19825	0.28	-2.0
2,243,193	-		BBR_RS19825	0.28	-1.1
2,243,193	-		BBR_RS19825	0.28	-1.1
2,243,194	+		BBR_RS19825	0.28	-3.7
2,243,200	-		BBR_RS19825	0.29	-3.2
2,243,201	+		BBR_RS19825	0.29	-2.1
2,243,204	-		BBR_RS19825	0.30	-2.2
2,243,204	-		BBR_RS19825	0.30	-2.3
2,243,209	+		BBR_RS19825	0.30	-2.0
2,243,210	+		BBR_RS19825	0.31	-0.3
2,243,215	+		BBR_RS19825	0.31	+0.2
2,243,217	-		BBR_RS19825	0.32	-1.5
2,243,219	+		BBR_RS19825	0.32	-1.9
2,243,227	-		BBR_RS19825	0.33	-2.2
2,243,249	-		BBR_RS19825	0.36	-2.2
2,243,273	-		BBR_RS19825	0.39	-1.4
2,243,274	+		BBR_RS19825	0.39	-1.2
2,243,326	+		BBR_RS19825	0.46	-1.4
2,243,376	+		BBR_RS19825	0.52	-1.6
2,243,381	+		BBR_RS19825	0.53	-1.9
2,243,383	+		BBR_RS19825	0.53	-3.9
2,243,389	-		BBR_RS19825	0.54	-2.4
2,243,391	+		BBR_RS19825	0.54	-1.1
2,243,391	+		BBR_RS19825	0.54	-4.1
2,243,391	+		BBR_RS19825	0.54	-0.8
2,243,391	+		BBR_RS19825	0.54	-0.5
2,243,391	+		BBR_RS19825	0.54	-1.5
2,243,391	+		BBR_RS19825	0.54	-1.4
2,243,393	+		BBR_RS19825	0.55	-3.3
2,243,393	+		BBR_RS19825	0.55	-3.1
2,243,399	+		BBR_RS19825	0.55	-1.0
2,243,399	-		BBR_RS19825	0.55	-1.0
2,243,399	-		BBR_RS19825	0.55	-1.8
2,243,399	-		BBR_RS19825	0.55	-0.6
2,243,399	-		BBR_RS19825	0.55	-0.7
2,243,399	-		BBR_RS19825	0.55	-0.9
2,243,399	-		BBR_RS19825	0.55	-1.9
2,243,399	-		BBR_RS19825	0.55	-2.2
2,243,399	-		BBR_RS19825	0.55	+0.5
2,243,399	-		BBR_RS19825	0.55	-1.8
2,243,399	-		BBR_RS19825	0.55	-0.4
2,243,399	-		BBR_RS19825	0.55	-1.3
2,243,400	-		BBR_RS19825	0.55	-0.6
2,243,401	-		BBR_RS19825	0.56	-2.1
2,243,407	-		BBR_RS19825	0.56	-2.1
2,243,407	-		BBR_RS19825	0.56	-2.2
2,243,408	-		BBR_RS19825	0.56	-0.8
2,243,416	+		BBR_RS19825	0.58	-1.8
2,243,424	-		BBR_RS19825	0.59	-2.3
2,243,426	-		BBR_RS19825	0.59	-2.0
2,243,429	+		BBR_RS19825	0.59	-2.9
2,243,434	-		BBR_RS19825	0.60	-0.8
2,243,439	-		BBR_RS19825	0.61	-0.5
2,243,449	-		BBR_RS19825	0.62	-0.9
2,243,454	-		BBR_RS19825	0.62	+0.1
2,243,454	-		BBR_RS19825	0.62	+0.4
2,243,461	+		BBR_RS19825	0.63	-0.9
2,243,465	+		BBR_RS19825	0.64	-0.5
2,243,465	+		BBR_RS19825	0.64	-1.1
2,243,465	+		BBR_RS19825	0.64	+0.1
2,243,471	+		BBR_RS19825	0.65	-1.0
2,243,471	+		BBR_RS19825	0.65	-2.3
2,243,471	+		BBR_RS19825	0.65	-1.4
2,243,479	-		BBR_RS19825	0.66	-2.4
2,243,487	+		BBR_RS19825	0.67	+1.4
2,243,488	+		BBR_RS19825	0.67	-1.4
2,243,496	+		BBR_RS19825	0.68	-2.2
2,243,496	-		BBR_RS19825	0.68	-2.6
2,243,496	-		BBR_RS19825	0.68	-0.2
2,243,507	+		BBR_RS19825	0.69	-2.0
2,243,512	+		BBR_RS19825	0.70	+1.1
2,243,526	-		BBR_RS19825	0.72	-2.2
2,243,533	+		BBR_RS19825	0.73	-1.4
2,243,536	-		BBR_RS19825	0.73	-0.5
2,243,538	+		BBR_RS19825	0.73	-0.6
2,243,557	+		BBR_RS19825	0.76	-0.4
2,243,557	+		BBR_RS19825	0.76	-1.6
2,243,560	-		BBR_RS19825	0.76	-0.6
2,243,570	-		BBR_RS19825	0.78	-2.5
2,243,572	+		BBR_RS19825	0.78	-1.8
2,243,607	-		BBR_RS19825	0.82	-0.2
2,243,614	+		BBR_RS19825	0.83	-0.3
2,243,614	+		BBR_RS19825	0.83	+0.8
2,243,622	-		BBR_RS19825	0.84	-1.3
2,243,622	-		BBR_RS19825	0.84	-1.1
2,243,623	+		BBR_RS19825	0.85	-2.0
2,243,624	+		BBR_RS19825	0.85	-0.2
2,243,631	-		BBR_RS19825	0.86	-0.1
2,243,719	-				-0.4
2,243,724	-				+0.7
2,243,758	-				-0.2
2,243,758	-				-0.7
2,243,758	-				+1.1
2,243,758	-				-0.5
2,243,767	+				+1.2
2,243,769	+				+1.1
2,243,780	-				-2.4
2,243,791	+				-0.6
2,243,796	+				-1.4
2,243,829	+				+1.7
2,243,829	+				+0.6
2,243,837	-				+0.7
2,243,845	+				+0.2
2,243,862	+				+0.4
2,243,864	-				+0.4
2,243,884	-				-0.8
2,243,906	+				+1.3
2,243,914	-				-0.9
2,243,916	+				-1.6
2,243,918	+				-0.3
2,243,934	-				+0.7
2,243,935	-				+1.4
2,243,936	-				-0.6
2,243,944	-		BBR_RS19830	0.10	+0.5
2,243,955	+		BBR_RS19830	0.11	-0.2
2,243,960	+		BBR_RS19830	0.12	-0.4
2,243,962	+		BBR_RS19830	0.12	-0.0
2,243,962	+		BBR_RS19830	0.12	-0.2
2,243,962	+		BBR_RS19830	0.12	-0.8
2,243,962	+		BBR_RS19830	0.12	+0.2
2,243,962	+		BBR_RS19830	0.12	-0.3
2,243,962	-		BBR_RS19830	0.12	+1.0
2,243,968	-		BBR_RS19830	0.13	-0.6
2,243,968	-		BBR_RS19830	0.13	+0.2
2,243,970	-		BBR_RS19830	0.13	+0.7
2,243,970	-		BBR_RS19830	0.13	+1.3
2,243,970	-		BBR_RS19830	0.13	-0.4
2,243,970	-		BBR_RS19830	0.13	+0.6
2,243,970	-		BBR_RS19830	0.13	-0.7
2,243,970	-		BBR_RS19830	0.13	-0.4
2,243,970	-		BBR_RS19830	0.13	+1.0
2,243,970	-		BBR_RS19830	0.13	+1.0
2,243,970	-		BBR_RS19830	0.13	-0.5
2,243,970	-		BBR_RS19830	0.13	+0.8
2,243,970	-		BBR_RS19830	0.13	+1.9
2,243,970	-		BBR_RS19830	0.13	+1.0
2,243,990	+		BBR_RS19830	0.15	-1.0
2,243,998	+		BBR_RS19830	0.16	+1.2
2,243,998	+		BBR_RS19830	0.16	+0.1
2,243,998	+		BBR_RS19830	0.16	+0.0
2,243,998	+		BBR_RS19830	0.16	-1.3
2,244,006	-		BBR_RS19830	0.17	+0.3
2,244,006	-		BBR_RS19830	0.17	+0.0
2,244,006	-		BBR_RS19830	0.17	+0.6
2,244,020	+		BBR_RS19830	0.19	-0.2
2,244,020	+		BBR_RS19830	0.19	+0.6
2,244,028	-		BBR_RS19830	0.20	+0.3
2,244,043	+		BBR_RS19830	0.21	+0.1
2,244,044	+		BBR_RS19830	0.22	+0.8
2,244,052	-		BBR_RS19830	0.23	-1.0
2,244,052	-		BBR_RS19830	0.23	+0.4
2,244,052	-		BBR_RS19830	0.23	-1.1
2,244,059	+		BBR_RS19830	0.23	+0.3
2,244,076	+		BBR_RS19830	0.25	-1.4
2,244,083	-		BBR_RS19830	0.26	+1.6
2,244,101	+		BBR_RS19830	0.28	-1.9
2,244,104	-		BBR_RS19830	0.29	-0.4
2,244,108	+		BBR_RS19830	0.29	-1.7
2,244,116	-		BBR_RS19830	0.30	-1.7
2,244,148	-		BBR_RS19830	0.34	+1.1
2,244,148	-		BBR_RS19830	0.34	-1.2
2,244,160	-		BBR_RS19830	0.35	-2.6
2,244,164	-		BBR_RS19830	0.36	-0.3
2,244,166	+		BBR_RS19830	0.36	-1.8
2,244,174	-		BBR_RS19830	0.37	+0.7
2,244,183	+		BBR_RS19830	0.38	-0.5
2,244,196	-		BBR_RS19830	0.39	-1.0
2,244,199	+		BBR_RS19830	0.40	+0.5
2,244,207	-		BBR_RS19830	0.41	+1.3
2,244,211	+		BBR_RS19830	0.41	+1.4
2,244,253	-		BBR_RS19830	0.46	+0.3
2,244,253	-		BBR_RS19830	0.46	-0.2
2,244,265	-		BBR_RS19830	0.47	-0.7
2,244,278	-		BBR_RS19830	0.49	+1.3
2,244,295	+		BBR_RS19830	0.51	+0.8
2,244,298	-		BBR_RS19830	0.51	-0.6
2,244,308	-		BBR_RS19830	0.52	-0.0
2,244,308	-		BBR_RS19830	0.52	+0.3
2,244,308	-		BBR_RS19830	0.52	+1.0
2,244,308	-		BBR_RS19830	0.52	-1.5
2,244,308	-		BBR_RS19830	0.52	+0.7
2,244,308	-		BBR_RS19830	0.52	+0.7
2,244,308	-		BBR_RS19830	0.52	+0.6
2,244,358	+		BBR_RS19830	0.58	+0.4
2,244,378	+		BBR_RS19830	0.60	+0.6
2,244,386	-		BBR_RS19830	0.61	-2.9
2,244,386	-		BBR_RS19830	0.61	+0.5
2,244,391	-		BBR_RS19830	0.62	-0.7
2,244,415	+		BBR_RS19830	0.65	+0.7
2,244,415	+		BBR_RS19830	0.65	-0.9
2,244,428	-		BBR_RS19830	0.66	-1.5
2,244,446	-		BBR_RS19830	0.68	-0.3
2,244,475	+		BBR_RS19830	0.72	-2.4
2,244,475	-		BBR_RS19830	0.72	+1.2
2,244,482	-		BBR_RS19830	0.72	-1.5
2,244,488	+		BBR_RS19830	0.73	-2.0
2,244,492	-		BBR_RS19830	0.74	-0.6
2,244,494	-		BBR_RS19830	0.74	-0.2
2,244,494	-		BBR_RS19830	0.74	-0.3
2,244,542	+		BBR_RS19830	0.79	-0.4
2,244,557	-		BBR_RS19830	0.81	-2.5
2,244,570	-		BBR_RS19830	0.83	-0.1
2,244,570	-		BBR_RS19830	0.83	-0.4
2,244,592	+		BBR_RS19830	0.85	+0.1
2,244,596	-		BBR_RS19830	0.86	-0.5
2,244,598	-		BBR_RS19830	0.86	-1.0
2,244,600	-		BBR_RS19830	0.86	-0.3
2,244,600	-		BBR_RS19830	0.86	+0.6
2,244,645	+				-2.3
2,244,645	+				+1.3
2,244,650	+				-2.9
2,244,650	+				+1.0
2,244,650	+				-0.1
2,244,653	-				-0.5
2,244,653	-				-0.3
2,244,653	-				+0.9
2,244,653	-				+1.3
2,244,658	-				-0.2
2,244,664	-				+0.3
2,244,664	-				+1.1
2,244,674	-				-0.2
2,244,679	+				-2.2
2,244,679	+				-0.6
2,244,707	-				+1.4
2,244,716	-				+0.9
2,244,718	+				+0.4
2,244,718	+				-1.0
2,244,727	+				-0.6
2,244,729	-				-1.1
2,244,729	-				+0.1
2,244,738	+				-0.6