Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19655

Experiment: mouse 1; day 1; diet=StandardDiet; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mouse 1; day 1; diet=StandardDiet; sample=FecalPellet
2,193,952	-		BBR_RS19650	0.29	-1.2
2,193,985	+		BBR_RS19650	0.31	+1.1
2,193,985	+		BBR_RS19650	0.31	-0.7
2,193,985	+		BBR_RS19650	0.31	+0.6
2,193,990	+		BBR_RS19650	0.31	+0.4
2,193,990	+		BBR_RS19650	0.31	+0.8
2,193,998	-		BBR_RS19650	0.32	-0.2
2,193,998	-		BBR_RS19650	0.32	-3.1
2,193,998	-		BBR_RS19650	0.32	-1.9
2,194,001	+		BBR_RS19650	0.32	+1.9
2,194,020	-		BBR_RS19650	0.34	+0.1
2,194,026	+		BBR_RS19650	0.34	-1.8
2,194,034	-		BBR_RS19650	0.35	-1.8
2,194,034	-		BBR_RS19650	0.35	+0.7
2,194,060	-		BBR_RS19650	0.36	-0.2
2,194,073	+		BBR_RS19650	0.37	-0.5
2,194,083	+		BBR_RS19650	0.38	-0.7
2,194,097	-		BBR_RS19650	0.39	-0.3
2,194,098	+		BBR_RS19650	0.39	+0.6
2,194,107	+		BBR_RS19650	0.40	+1.5
2,194,128	+		BBR_RS19650	0.41	+0.1
2,194,144	-		BBR_RS19650	0.42	+0.1
2,194,146	-		BBR_RS19650	0.43	+0.4
2,194,179	+		BBR_RS19650	0.45	-2.0
2,194,189	+		BBR_RS19650	0.46	-0.4
2,194,193	+		BBR_RS19650	0.46	-0.1
2,194,202	+		BBR_RS19650	0.46	-1.0
2,194,210	-		BBR_RS19650	0.47	+1.2
2,194,250	-		BBR_RS19650	0.50	-0.5
2,194,255	-		BBR_RS19650	0.50	-0.0
2,194,257	+		BBR_RS19650	0.50	-0.7
2,194,270	+		BBR_RS19650	0.51	+0.1
2,194,270	+		BBR_RS19650	0.51	+0.6
2,194,270	+		BBR_RS19650	0.51	-0.7
2,194,270	+		BBR_RS19650	0.51	-0.3
2,194,270	+		BBR_RS19650	0.51	+0.7
2,194,270	+		BBR_RS19650	0.51	+0.3
2,194,270	+		BBR_RS19650	0.51	+0.0
2,194,272	+		BBR_RS19650	0.51	+0.4
2,194,276	-		BBR_RS19650	0.52	+0.4
2,194,278	-		BBR_RS19650	0.52	+1.1
2,194,278	-		BBR_RS19650	0.52	-0.5
2,194,282	+		BBR_RS19650	0.52	+1.1
2,194,282	+		BBR_RS19650	0.52	-0.0
2,194,284	+		BBR_RS19650	0.52	+0.4
2,194,290	-		BBR_RS19650	0.53	-0.9
2,194,317	+		BBR_RS19650	0.55	-1.3
2,194,324	+		BBR_RS19650	0.55	+0.0
2,194,325	-		BBR_RS19650	0.55	-3.5
2,194,325	-		BBR_RS19650	0.55	+1.1
2,194,338	+		BBR_RS19650	0.56	-1.0
2,194,349	+		BBR_RS19650	0.57	-0.7
2,194,349	-		BBR_RS19650	0.57	-1.2
2,194,362	-		BBR_RS19650	0.58	+2.3
2,194,374	+		BBR_RS19650	0.59	-0.9
2,194,374	+		BBR_RS19650	0.59	+0.6
2,194,375	-		BBR_RS19650	0.59	+0.5
2,194,382	-		BBR_RS19650	0.59	+0.8
2,194,382	-		BBR_RS19650	0.59	-2.1
2,194,382	-		BBR_RS19650	0.59	-1.9
2,194,394	+		BBR_RS19650	0.60	-0.0
2,194,398	-		BBR_RS19650	0.60	-1.4
2,194,399	+		BBR_RS19650	0.60	+1.2
2,194,399	+		BBR_RS19650	0.60	+1.3
2,194,407	-		BBR_RS19650	0.61	-1.0
2,194,421	+		BBR_RS19650	0.62	+0.4
2,194,421	+		BBR_RS19650	0.62	-1.2
2,194,421	+		BBR_RS19650	0.62	-0.6
2,194,435	+		BBR_RS19650	0.63	+0.0
2,194,435	+		BBR_RS19650	0.63	+0.5
2,194,448	+		BBR_RS19650	0.64	-2.3
2,194,448	+		BBR_RS19650	0.64	+0.7
2,194,448	+		BBR_RS19650	0.64	-1.3
2,194,480	+		BBR_RS19650	0.66	+0.2
2,194,498	-		BBR_RS19650	0.67	-1.8
2,194,508	+		BBR_RS19650	0.68	-2.4
2,194,509	+		BBR_RS19650	0.68	-0.2
2,194,510	+		BBR_RS19650	0.68	+0.7
2,194,510	+		BBR_RS19650	0.68	-0.1
2,194,510	+		BBR_RS19650	0.68	+0.2
2,194,513	-		BBR_RS19650	0.68	+1.3
2,194,526	-		BBR_RS19650	0.69	+0.0
2,194,529	+		BBR_RS19650	0.70	-0.2
2,194,537	-		BBR_RS19650	0.70	-0.6
2,194,539	+		BBR_RS19650	0.70	-2.0
2,194,549	+		BBR_RS19650	0.71	+0.7
2,194,559	-		BBR_RS19650	0.72	+0.4
2,194,562	-		BBR_RS19650	0.72	+0.6
2,194,573	-		BBR_RS19650	0.73	-0.3
2,194,578	-		BBR_RS19650	0.73	-2.8
2,194,578	-		BBR_RS19650	0.73	-0.2
2,194,606	+		BBR_RS19650	0.75	+0.8
2,194,629	+		BBR_RS19650	0.77	-0.6
2,194,651	-		BBR_RS19650	0.78	-0.7
2,194,687	+		BBR_RS19650	0.81	-1.6
2,194,695	-		BBR_RS19650	0.81	+0.7
2,194,699	+		BBR_RS19650	0.82	-0.3
2,194,707	-		BBR_RS19650	0.82	-2.6
2,194,709	+		BBR_RS19650	0.82	-0.0
2,194,713	+		BBR_RS19650	0.83	-0.4
2,194,714	+		BBR_RS19650	0.83	-2.7
2,194,718	+		BBR_RS19650	0.83	-0.1
2,194,731	+		BBR_RS19650	0.84	+0.0
2,194,741	-		BBR_RS19650	0.85	+0.3
2,194,741	-		BBR_RS19650	0.85	-0.6
2,194,756	+		BBR_RS19650	0.86	+0.0
2,194,756	+		BBR_RS19650	0.86	+1.1
2,194,758	-		BBR_RS19650	0.86	+0.5
2,194,764	-		BBR_RS19650	0.86	-1.6
2,194,766	+		BBR_RS19650	0.86	+0.9
2,194,780	+		BBR_RS19650	0.87	-1.2
2,194,787	-		BBR_RS19650	0.88	+0.8
2,194,805	-		BBR_RS19650	0.89	-2.2
2,194,805	-		BBR_RS19650	0.89	-0.2
2,194,835	+				+0.1
2,194,845	+				-0.7
2,194,848	+				+0.8
2,194,853	-				-0.4
2,194,858	+				-0.3
2,194,858	+				-0.0
2,194,866	-				-2.1
2,194,866	-				-1.5
2,194,881	+				-0.2
2,194,889	+				+0.5
2,194,889	+				-0.7
2,194,889	+				-0.1
2,194,889	+				-0.7
2,194,889	+				+0.5
2,194,889	+				+0.9
2,194,889	+				-2.6
2,194,897	-				-0.6
2,194,897	-				-1.3
2,194,897	-				-0.6
2,194,897	-				+1.7
2,194,897	-				-0.9
2,194,897	-				+0.5
2,194,897	-				-1.0
2,194,927	-				-0.4
2,194,960	+				+0.7
2,194,991	-				-2.3
2,195,015	+				+0.8
2,195,015	+				-1.5
2,195,086	-		BBR_RS19655	0.17	-3.4
2,195,099	+		BBR_RS19655	0.18	-1.4
2,195,100	+		BBR_RS19655	0.18	-3.7
2,195,103	-		BBR_RS19655	0.19	-2.2
2,195,107	-		BBR_RS19655	0.19	-2.5
2,195,107	-		BBR_RS19655	0.19	-2.5
2,195,107	-		BBR_RS19655	0.19	-1.8
2,195,107	-		BBR_RS19655	0.19	-2.8
2,195,107	-		BBR_RS19655	0.19	-1.9
2,195,107	-		BBR_RS19655	0.19	-1.3
2,195,118	+		BBR_RS19655	0.21	-0.9
2,195,118	+		BBR_RS19655	0.21	-3.2
2,195,128	+		BBR_RS19655	0.22	-0.5
2,195,131	-		BBR_RS19655	0.22	-2.1
2,195,131	-		BBR_RS19655	0.22	-1.8
2,195,131	-		BBR_RS19655	0.22	-3.3
2,195,146	-		BBR_RS19655	0.24	-3.7
2,195,171	-		BBR_RS19655	0.27	-2.4
2,195,178	+		BBR_RS19655	0.28	-0.2
2,195,208	-		BBR_RS19655	0.32	-0.4
2,195,208	-		BBR_RS19655	0.32	-0.1
2,195,213	+		BBR_RS19655	0.32	-2.7
2,195,221	-		BBR_RS19655	0.33	-0.5
2,195,272	+		BBR_RS19655	0.39	-1.8
2,195,278	-		BBR_RS19655	0.40	-1.3
2,195,280	-		BBR_RS19655	0.40	-1.2
2,195,280	-		BBR_RS19655	0.40	-1.4
2,195,291	+		BBR_RS19655	0.42	+1.0
2,195,305	+		BBR_RS19655	0.43	-1.8
2,195,344	+		BBR_RS19655	0.48	-2.0
2,195,353	+		BBR_RS19655	0.49	-1.4
2,195,404	+		BBR_RS19655	0.55	-1.8
2,195,404	+		BBR_RS19655	0.55	-0.6
2,195,404	+		BBR_RS19655	0.55	-0.3
2,195,404	+		BBR_RS19655	0.55	-0.8
2,195,404	+		BBR_RS19655	0.55	-0.9
2,195,404	+		BBR_RS19655	0.55	+0.2
2,195,404	+		BBR_RS19655	0.55	-2.0
2,195,412	-		BBR_RS19655	0.56	-1.7
2,195,412	-		BBR_RS19655	0.56	-1.8
2,195,415	+		BBR_RS19655	0.57	-1.1
2,195,417	+		BBR_RS19655	0.57	-1.5
2,195,418	-		BBR_RS19655	0.57	+2.4
2,195,425	-		BBR_RS19655	0.58	-0.5
2,195,425	-		BBR_RS19655	0.58	+2.4
2,195,428	+		BBR_RS19655	0.58	+0.7
2,195,430	+		BBR_RS19655	0.59	+0.3
2,195,430	+		BBR_RS19655	0.59	-1.6
2,195,436	-		BBR_RS19655	0.59	-3.1
2,195,459	+		BBR_RS19655	0.62	+1.2
2,195,459	+		BBR_RS19655	0.62	-0.5
2,195,459	+		BBR_RS19655	0.62	-0.7
2,195,469	+		BBR_RS19655	0.63	-0.9
2,195,469	+		BBR_RS19655	0.63	-2.5
2,195,492	-		BBR_RS19655	0.66	-0.3
2,195,540	+		BBR_RS19655	0.72	-1.9
2,195,540	+		BBR_RS19655	0.72	-2.0
2,195,540	+		BBR_RS19655	0.72	-1.5
2,195,540	+		BBR_RS19655	0.72	-1.1
2,195,548	-		BBR_RS19655	0.73	+0.1
2,195,548	-		BBR_RS19655	0.73	-0.1
2,195,548	-		BBR_RS19655	0.73	-0.9
2,195,548	-		BBR_RS19655	0.73	-0.1
2,195,600	+		BBR_RS19655	0.79	-2.8
2,195,610	-		BBR_RS19655	0.80	+0.9
2,195,610	-		BBR_RS19655	0.80	-2.3
2,195,659	-		BBR_RS19655	0.86	-1.1
2,195,659	-		BBR_RS19655	0.86	-1.0
2,195,666	+		BBR_RS19655	0.87	-2.0
2,195,668	+		BBR_RS19655	0.87	-2.1
2,195,668	+		BBR_RS19655	0.87	+0.2
2,195,668	+		BBR_RS19655	0.87	-0.5
2,195,668	+		BBR_RS19655	0.87	-1.3
2,195,668	+		BBR_RS19655	0.87	-1.3
2,195,668	+		BBR_RS19655	0.87	-0.6
2,195,668	+		BBR_RS19655	0.87	+1.0
2,195,668	+		BBR_RS19655	0.87	-3.9
2,195,668	+		BBR_RS19655	0.87	-0.0
2,195,676	-		BBR_RS19655	0.88	+0.4
2,195,676	-		BBR_RS19655	0.88	-3.0
2,195,676	-		BBR_RS19655	0.88	-1.7
2,195,676	-		BBR_RS19655	0.88	-3.4
2,195,676	-		BBR_RS19655	0.88	-1.5
2,195,676	-		BBR_RS19655	0.88	-0.6
2,195,676	-		BBR_RS19655	0.88	+0.3
2,195,681	-		BBR_RS19655	0.89	-0.1
2,195,687	+		BBR_RS19655	0.90	-1.0
2,195,694	+				-2.2
2,195,695	-				-2.0
2,195,695	-				-0.7
2,195,697	+				-0.7
2,195,697	+				-0.5
2,195,697	+				-1.6
2,195,705	-				-0.8
2,195,707	+				-1.3
2,195,710	-				-0.5
2,195,718	-				-0.4
2,195,718	-				-2.9
2,195,725	-				-3.2
2,195,731	+				-1.7
2,195,733	-				-2.7
2,195,736	+				-3.3
2,195,736	+				-1.4
2,195,736	+				-1.6
2,195,736	+				-0.6
2,195,736	+				-0.4
2,195,736	+				-1.0
2,195,736	+				-1.1
2,195,744	-				-2.5
2,195,744	-				+1.7
2,195,744	-				-1.5
2,195,744	-				-3.0
2,195,744	-				-0.4
2,195,744	-				-2.3
2,195,744	-				-1.6
2,195,744	-				-1.8
2,195,744	-				-0.2
2,195,744	-				-0.7
2,195,761	+				-1.4
2,195,785	+				-0.9
2,195,793	-				+0.8
2,195,793	-				+1.3
2,195,793	-				+0.1
2,195,793	-				+0.5
2,195,794	+				+0.2
2,195,806	+				-0.3
2,195,815	-				-0.5
2,195,854	+				+0.5
2,195,854	+				+2.2
2,195,859	+				+0.2
2,195,859	+				-0.4
2,195,886	+				-0.7
2,195,886	+				+0.2
2,195,888	+				-0.6
2,195,894	-				-0.9
2,195,898	+				-0.7
2,195,905	+				+0.1
2,195,927	+				+0.3
2,195,927	+				+0.1
2,195,927	+				-1.4
2,195,933	-				-0.7
2,195,933	-				+0.2
2,195,934	-				+0.4
2,195,935	-				+0.1
2,195,944	+				+0.9
2,195,956	+				+1.1
2,195,956	+				-1.8
2,195,956	+				-0.5
2,195,960	-				+0.1
2,195,960	-				+0.7
2,195,974	+				-1.0
2,195,983	-				-0.3
2,195,988	+				-1.7
2,195,992	+				+1.0
2,195,992	+				-1.8
2,195,996	-				-0.7
2,196,014	-				+0.2
2,196,014	-				-0.4
2,196,024	-				-0.4
2,196,058	-				-0.9
2,196,074	+				-0.0
2,196,081	+				-1.0
2,196,082	-				+0.6
2,196,114	+				-2.8
2,196,148	-		BBR_RS21125	0.13	-0.3
2,196,165	+		BBR_RS21125	0.21	-0.4
2,196,178	-		BBR_RS21125	0.26	-1.6
2,196,178	-		BBR_RS21125	0.26	-0.0
2,196,210	-		BBR_RS21125	0.40	+0.7
2,196,210	-		BBR_RS21125	0.40	-1.0
2,196,261	-		BBR_RS21125	0.62	+0.3
2,196,280	-		BBR_RS21125	0.71	-0.8
2,196,280	-		BBR_RS21125	0.71	+0.1
2,196,290	-		BBR_RS21125	0.75	-1.6
2,196,290	-		BBR_RS21125	0.75	-0.3
2,196,290	-		BBR_RS21125	0.75	+0.6
2,196,319	+		BBR_RS21125	0.87	-0.6
2,196,319	+		BBR_RS21125	0.87	-0.7
2,196,319	+		BBR_RS21125	0.87	+0.4
2,196,319	+		BBR_RS21125	0.87	+0.7
2,196,319	+		BBR_RS21125	0.87	-0.8
2,196,319	-		BBR_RS21125	0.87	+1.1
2,196,329	+				+1.1
2,196,336	+				-3.2
2,196,369	-				-1.9
2,196,371	+				-0.6
2,196,371	+				+0.1
2,196,415	-				+0.3
2,196,417	+				-1.8
2,196,417	+				+0.2
2,196,419	+				+0.8
2,196,419	+				+1.1
2,196,419	+				-1.0
2,196,421	-				+0.4
2,196,427	-				-0.9
2,196,477	-				-1.7
2,196,507	+				-0.8
2,196,507	+				-1.0
2,196,509	+				+0.5
2,196,534	-				-0.3
2,196,544	-				+0.7
2,196,550	-				+0.5
2,196,550	-				-0.3
2,196,553	+				-0.5
2,196,553	+				-1.0
2,196,561	-				-0.1
2,196,575	+				+1.0
2,196,575	+				-1.6
2,196,578	-				-1.6
2,196,596	+				-0.1
2,196,597	+				-0.4
2,196,598	-				+1.6
2,196,610	+				-1.2
2,196,652	+				+0.8
2,196,652	+				+0.7
2,196,652	+				+0.4
2,196,652	+				-2.4
2,196,660	-				-1.6
2,196,678	+				+0.7
2,196,678	+				-0.2
2,196,681	+				-0.5
2,196,681	+				-0.4
2,196,681	+				-0.4
2,196,681	+				-1.3
2,196,681	+				+0.1
2,196,686	+				+1.2
2,196,686	+				-2.1
2,196,686	+				-0.3
2,196,689	-				+0.6
2,196,691	+				-0.9
2,196,691	+				+1.0
2,196,693	+				-0.8
2,196,694	-				+0.2
2,196,709	+				+0.8
2,196,728	+				+0.1
2,196,735	+				+0.1
2,196,740	+				+0.8
2,196,761	+				-0.3
2,196,767	+				-0.6
2,196,767	+				-2.5
2,196,767	+				+0.4