Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19165

Experiment: mouse 1; day 1; diet=StandardDiet; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mouse 1; day 1; diet=StandardDiet; sample=FecalPellet
2,073,871	-		BBR_RS19160	0.88	-2.9
2,073,928	-				-0.6
2,073,928	-				-1.4
2,073,928	-				+0.2
2,074,007	-				+0.1
2,074,009	+				-2.0
2,074,033	+				-0.3
2,074,066	+				-1.3
2,074,066	+				-3.8
2,074,088	+				-0.6
2,074,088	+				-0.1
2,074,088	+				-2.7
2,074,088	-				-0.7
2,074,096	-				+0.8
2,074,096	-				+1.2
2,074,096	-				-0.2
2,074,108	+				-1.5
2,074,108	-				+1.0
2,074,116	-				+0.4
2,074,152	-				+1.3
2,074,152	-				+1.5
2,074,158	+				-2.6
2,074,164	-				+1.3
2,074,166	-				+0.8
2,074,169	+				+0.6
2,074,169	+				+0.4
2,074,169	+				-0.6
2,074,169	+				+0.3
2,074,169	+				+0.3
2,074,177	-				+1.0
2,074,177	-				+1.0
2,074,177	-				+0.1
2,074,200	+				-1.7
2,074,201	+				-0.5
2,074,201	+				-0.3
2,074,209	-				-0.9
2,074,236	+				-0.8
2,074,238	+				-1.6
2,074,238	+				-2.7
2,074,244	-				-1.7
2,074,246	-				-2.2
2,074,246	-				-1.6
2,074,248	+				+0.5
2,074,256	-				-3.5
2,074,284	+				-0.1
2,074,290	-				-2.4
2,074,292	-				-2.5
2,074,313	-		BBR_RS19165	0.11	-1.1
2,074,319	-		BBR_RS19165	0.11	+0.8
2,074,319	-		BBR_RS19165	0.11	+0.5
2,074,323	-		BBR_RS19165	0.11	-2.5
2,074,632	-		BBR_RS19165	0.39	-1.2
2,075,371	-				+0.4
2,075,381	+				+0.7
2,075,392	+				-0.2
2,075,408	+				-2.1
2,075,445	+				+0.7
2,075,445	+				+0.2
2,075,453	+				-2.3
2,075,460	-				-0.3
2,075,490	-				-0.8
2,075,496	+				-0.6
2,075,497	+				-0.5
2,075,497	+				-0.6
2,075,497	+				+0.5
2,075,497	+				-0.1
2,075,497	+				+0.3
2,075,504	-				-2.5
2,075,504	-				-0.5
2,075,505	-				+0.9
2,075,505	-				+0.5
2,075,513	-				+0.1
2,075,513	-				+0.8
2,075,604	+				+0.9
2,075,612	+				+0.3
2,075,612	-				-1.0
2,075,612	-				-3.3
2,075,621	+				-0.4
2,075,623	+				-0.1
2,075,623	+				-0.2
2,075,623	+				+0.0
2,075,631	-				+0.3
2,075,632	+				-0.0
2,075,632	-				-0.2
2,075,638	-				-1.6
2,075,638	-				-0.1
2,075,638	-				+0.2
2,075,638	-				+0.8
2,075,638	-				-1.0
2,075,640	+				-1.5
2,075,640	+				+1.7
2,075,640	-				+1.1
2,075,640	-				+0.6
2,075,672	+		BBR_RS19170	0.13	-1.9
2,075,672	+		BBR_RS19170	0.13	-0.5
2,075,672	+		BBR_RS19170	0.13	+0.6
2,075,672	+		BBR_RS19170	0.13	-1.4
2,075,672	+		BBR_RS19170	0.13	+0.2
2,075,680	-		BBR_RS19170	0.14	+0.6
2,075,680	-		BBR_RS19170	0.14	+0.8
2,075,680	-		BBR_RS19170	0.14	-0.8
2,075,680	-		BBR_RS19170	0.14	+0.2
2,075,680	-		BBR_RS19170	0.14	-0.1
2,075,680	-		BBR_RS19170	0.14	-1.4
2,075,680	-		BBR_RS19170	0.14	-2.8
2,075,680	-		BBR_RS19170	0.14	+0.4
2,075,680	-		BBR_RS19170	0.14	-0.9
2,075,685	+		BBR_RS19170	0.15	+0.5
2,075,685	+		BBR_RS19170	0.15	-1.9
2,075,685	+		BBR_RS19170	0.15	+0.3
2,075,685	+		BBR_RS19170	0.15	-1.7
2,075,691	-		BBR_RS19170	0.16	+0.9
2,075,693	-		BBR_RS19170	0.16	-0.7
2,075,693	-		BBR_RS19170	0.16	+0.7
2,075,762	+		BBR_RS19170	0.26	-0.4
2,075,764	-		BBR_RS19170	0.26	-1.5
2,075,770	-		BBR_RS19170	0.27	-1.5
2,075,770	-		BBR_RS19170	0.27	-2.4
2,075,788	-		BBR_RS19170	0.30	-0.3
2,075,812	+		BBR_RS19170	0.33	-1.0
2,075,832	+		BBR_RS19170	0.36	-0.4
2,075,832	+		BBR_RS19170	0.36	-2.6
2,075,832	+		BBR_RS19170	0.36	+0.2
2,075,849	-		BBR_RS19170	0.38	-1.0
2,075,849	-		BBR_RS19170	0.38	-0.3
2,075,862	-		BBR_RS19170	0.40	-2.1
2,075,890	+		BBR_RS19170	0.44	+0.5
2,075,903	+		BBR_RS19170	0.46	-1.3
2,075,903	-		BBR_RS19170	0.46	+0.4
2,075,908	+		BBR_RS19170	0.47	-1.1
2,075,911	-		BBR_RS19170	0.47	+0.3
2,075,948	-		BBR_RS19170	0.52	-0.2
2,076,014	+		BBR_RS19170	0.62	+0.7
2,076,014	+		BBR_RS19170	0.62	-1.0
2,076,015	-		BBR_RS19170	0.62	-1.5
2,076,021	-		BBR_RS19170	0.63	-1.8
2,076,021	-		BBR_RS19170	0.63	-0.4
2,076,021	-		BBR_RS19170	0.63	+0.5
2,076,022	-		BBR_RS19170	0.63	+0.8
2,076,022	-		BBR_RS19170	0.63	-1.1
2,076,022	-		BBR_RS19170	0.63	-2.2
2,076,022	-		BBR_RS19170	0.63	+0.2
2,076,057	-		BBR_RS19170	0.68	-1.0
2,076,071	-		BBR_RS19170	0.70	+0.6
2,076,078	-		BBR_RS19170	0.71	+1.8
2,076,096	+		BBR_RS19170	0.73	+0.1
2,076,096	+		BBR_RS19170	0.73	-1.6
2,076,096	+		BBR_RS19170	0.73	+0.7
2,076,099	-		BBR_RS19170	0.74	+0.1
2,076,099	-		BBR_RS19170	0.74	+0.4
2,076,104	-		BBR_RS19170	0.75	-0.4
2,076,109	-		BBR_RS19170	0.75	-0.1
2,076,133	-		BBR_RS19170	0.79	-0.0
2,076,135	+		BBR_RS19170	0.79	-0.1
2,076,136	+		BBR_RS19170	0.79	+0.8
2,076,138	-		BBR_RS19170	0.79	+0.6
2,076,141	+		BBR_RS19170	0.80	-2.5
2,076,149	-		BBR_RS19170	0.81	-0.2
2,076,150	+		BBR_RS19170	0.81	+1.3
2,076,158	-		BBR_RS19170	0.82	+0.5
2,076,158	-		BBR_RS19170	0.82	-0.9
2,076,165	+		BBR_RS19170	0.83	+0.4
2,076,166	+		BBR_RS19170	0.83	+0.5
2,076,173	-		BBR_RS19170	0.84	+0.4
2,076,173	-		BBR_RS19170	0.84	+0.3
2,076,173	-		BBR_RS19170	0.84	+0.4
2,076,173	-		BBR_RS19170	0.84	-0.0
2,076,173	-		BBR_RS19170	0.84	-0.1
2,076,173	-		BBR_RS19170	0.84	-0.1
2,076,173	-		BBR_RS19170	0.84	-0.2
2,076,173	-		BBR_RS19170	0.84	-0.6
2,076,173	-		BBR_RS19170	0.84	+0.8
2,076,173	-		BBR_RS19170	0.84	+0.0
2,076,174	-		BBR_RS19170	0.85	+0.0
2,076,201	+		BBR_RS19170	0.88	-2.1
2,076,201	+		BBR_RS19170	0.88	-0.8
2,076,202	+		BBR_RS19170	0.89	-0.5
2,076,202	+		BBR_RS19170	0.89	-1.0
2,076,202	+		BBR_RS19170	0.89	-0.9
2,076,202	+		BBR_RS19170	0.89	+0.0
2,076,202	+		BBR_RS19170	0.89	+0.7
2,076,209	-		BBR_RS19170	0.90	+1.2
2,076,209	-		BBR_RS19170	0.90	+1.1
2,076,209	-		BBR_RS19170	0.90	+0.7
2,076,209	-		BBR_RS19170	0.90	+1.2
2,076,209	-		BBR_RS19170	0.90	+0.2
2,076,209	-		BBR_RS19170	0.90	-0.6
2,076,209	-		BBR_RS19170	0.90	+0.5
2,076,210	-		BBR_RS19170	0.90	+0.3
2,076,210	-		BBR_RS19170	0.90	+2.5
2,076,210	-		BBR_RS19170	0.90	-0.3
2,076,210	-		BBR_RS19170	0.90	-0.3
2,076,218	-				-0.7
2,076,223	-				-0.6
2,076,223	-				+0.6
2,076,229	+				-2.0
2,076,302	+				-1.9