Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17505

Experiment: mouse 1; day 1; diet=StandardDiet; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mouse 1; day 1; diet=StandardDiet; sample=FecalPellet
1,704,968	+		BBR_RS17495	0.57	-2.4
1,704,968	+		BBR_RS17495	0.57	-2.3
1,704,980	-		BBR_RS17495	0.58	-1.5
1,705,037	-		BBR_RS17495	0.64	-1.0
1,705,055	+		BBR_RS17495	0.66	-0.4
1,705,063	-		BBR_RS17495	0.67	+0.5
1,705,069	+		BBR_RS17495	0.68	-0.8
1,705,074	+		BBR_RS17495	0.68	-2.7
1,705,074	+		BBR_RS17495	0.68	-0.6
1,705,115	+		BBR_RS17495	0.72	-2.5
1,705,115	+		BBR_RS17495	0.72	-2.8
1,705,123	-		BBR_RS17495	0.73	-1.6
1,705,123	-		BBR_RS17495	0.73	-3.0
1,705,123	-		BBR_RS17495	0.73	-0.8
1,705,123	-		BBR_RS17495	0.73	-1.0
1,705,142	+		BBR_RS17495	0.75	-2.5
1,705,145	-		BBR_RS17495	0.76	-0.7
1,705,188	-		BBR_RS17495	0.80	-1.6
1,705,188	-		BBR_RS17495	0.80	-0.2
1,705,196	+		BBR_RS17495	0.81	-0.8
1,705,214	-		BBR_RS17495	0.83	-2.7
1,705,223	+		BBR_RS17495	0.84	-1.6
1,705,244	+		BBR_RS17495	0.86	-2.6
1,705,246	-		BBR_RS17495	0.86	-0.1
1,705,252	-		BBR_RS17495	0.87	-1.4
1,705,301	-				+0.6
1,705,310	+				+0.4
1,705,310	+				-0.2
1,705,310	+				+1.1
1,705,312	+				+0.7
1,705,312	+				-0.1
1,705,312	+				+1.2
1,705,312	+				-2.2
1,705,312	+				+1.0
1,705,312	+				+0.9
1,705,312	+				-0.4
1,705,317	+				-0.8
1,705,320	-				+0.4
1,705,320	-				-0.1
1,705,333	+				+0.8
1,705,344	+				+1.2
1,705,352	-				-2.8
1,705,377	-				-1.5
1,705,394	-				+0.4
1,705,419	-				-2.2
1,705,425	+				-2.3
1,705,469	+		BBR_RS17500	0.18	-0.9
1,705,494	-		BBR_RS17500	0.22	-1.4
1,705,522	+		BBR_RS17500	0.28	-1.1
1,705,546	+		BBR_RS17500	0.32	-3.8
1,705,548	+		BBR_RS17500	0.32	+0.4
1,705,548	+		BBR_RS17500	0.32	-0.8
1,705,548	+		BBR_RS17500	0.32	-1.8
1,705,556	-		BBR_RS17500	0.34	+0.4
1,705,596	-		BBR_RS17500	0.41	-0.6
1,705,599	+		BBR_RS17500	0.42	-3.1
1,705,607	-		BBR_RS17500	0.43	-0.2
1,705,609	+		BBR_RS17500	0.44	-3.4
1,705,611	+		BBR_RS17500	0.44	-1.5
1,705,617	-		BBR_RS17500	0.45	-2.1
1,705,669	+		BBR_RS17500	0.55	-2.8
1,705,716	+		BBR_RS17500	0.63	-2.8
1,705,793	-		BBR_RS17500	0.78	-3.5
1,705,801	+		BBR_RS17500	0.79	-1.9
1,705,801	+		BBR_RS17500	0.79	-3.1
1,705,801	+		BBR_RS17500	0.79	-2.4
1,705,801	+		BBR_RS17500	0.79	-2.8
1,705,803	+		BBR_RS17500	0.79	-1.5
1,705,804	-		BBR_RS17500	0.80	-2.3
1,705,806	+		BBR_RS17500	0.80	-3.3
1,705,809	-		BBR_RS17500	0.80	-3.1
1,705,809	-		BBR_RS17500	0.80	-2.9
1,705,811	-		BBR_RS17500	0.81	-1.4
1,705,908	+				+0.5
1,705,931	+				+0.2
1,705,931	+				-3.9
1,705,931	+				+1.3
1,705,939	-				-3.0
1,705,939	-				-0.4
1,705,939	-				-0.4
1,706,045	+		BBR_RS17505	0.13	+0.6
1,706,053	-		BBR_RS17505	0.13	-1.0
1,706,059	-		BBR_RS17505	0.14	+1.5
1,706,075	-		BBR_RS17505	0.15	-1.5
1,706,112	+		BBR_RS17505	0.19	-1.1
1,706,129	+		BBR_RS17505	0.21	-1.7
1,706,138	-		BBR_RS17505	0.21	-2.9
1,706,154	+		BBR_RS17505	0.23	-1.5
1,706,200	+		BBR_RS17505	0.27	-1.4
1,706,202	+		BBR_RS17505	0.27	-1.4
1,706,212	+		BBR_RS17505	0.28	-2.9
1,706,212	+		BBR_RS17505	0.28	-1.8
1,706,220	-		BBR_RS17505	0.29	-2.3
1,706,227	+		BBR_RS17505	0.30	-2.7
1,706,232	+		BBR_RS17505	0.30	-1.1
1,706,237	+		BBR_RS17505	0.31	+0.4
1,706,244	-		BBR_RS17505	0.31	-3.5
1,706,263	-		BBR_RS17505	0.33	-2.7
1,706,337	+		BBR_RS17505	0.40	-3.4
1,706,345	-		BBR_RS17505	0.41	-2.3
1,706,357	-		BBR_RS17505	0.42	+0.8
1,706,397	+		BBR_RS17505	0.46	-1.9
1,706,399	+		BBR_RS17505	0.46	-0.7
1,706,399	+		BBR_RS17505	0.46	-1.9
1,706,399	+		BBR_RS17505	0.46	-1.7
1,706,399	+		BBR_RS17505	0.46	-1.0
1,706,399	+		BBR_RS17505	0.46	-3.0
1,706,405	-		BBR_RS17505	0.47	-1.0
1,706,407	-		BBR_RS17505	0.47	+0.3
1,706,407	-		BBR_RS17505	0.47	-1.7
1,706,407	-		BBR_RS17505	0.47	+0.9
1,706,435	+		BBR_RS17505	0.49	-2.0
1,706,446	+		BBR_RS17505	0.51	-3.7
1,706,452	-		BBR_RS17505	0.51	-3.7
1,706,470	+		BBR_RS17505	0.53	-1.0
1,706,470	+		BBR_RS17505	0.53	-2.5
1,706,471	+		BBR_RS17505	0.53	-2.1
1,706,478	-		BBR_RS17505	0.54	+0.4
1,706,481	+		BBR_RS17505	0.54	-2.1
1,706,489	+		BBR_RS17505	0.55	-1.5
1,706,528	-		BBR_RS17505	0.58	-2.1
1,706,528	-		BBR_RS17505	0.58	-1.3
1,706,531	-		BBR_RS17505	0.59	+0.0
1,706,531	-		BBR_RS17505	0.59	-2.7
1,706,546	-		BBR_RS17505	0.60	-2.2
1,706,601	+		BBR_RS17505	0.65	+0.7
1,706,618	-		BBR_RS17505	0.67	-0.4
1,706,677	-		BBR_RS17505	0.72	-1.2
1,706,703	+		BBR_RS17505	0.75	-1.5
1,706,703	+		BBR_RS17505	0.75	-1.3
1,706,713	-		BBR_RS17505	0.76	-1.3
1,706,736	+		BBR_RS17505	0.78	-2.3
1,706,736	+		BBR_RS17505	0.78	-0.7
1,706,772	+		BBR_RS17505	0.81	-2.7
1,706,828	-		BBR_RS17505	0.87	-0.2
1,706,838	-		BBR_RS17505	0.88	+0.8
1,706,842	+		BBR_RS17505	0.88	-3.5
1,706,858	-		BBR_RS17505	0.89	-0.6
1,706,869	+				-1.0
1,706,893	+				-3.1
1,706,901	-				-1.9
1,706,901	-				+0.4
1,706,901	-				-1.0
1,706,903	+				-3.1
1,706,905	+				-1.6
1,706,948	+				+0.0
1,706,949	+				-1.6
1,706,950	+				+0.9
1,706,950	+				-1.2
1,706,990	+				-2.5
1,706,998	-				-2.3
1,707,002	+				+0.4
1,707,038	-				-1.2
1,707,163	-		BBR_RS17510	0.19	-2.3
1,707,183	+		BBR_RS17510	0.21	-1.7
1,707,201	+		BBR_RS17510	0.23	-1.3
1,707,206	+		BBR_RS17510	0.23	-1.6
1,707,209	-		BBR_RS17510	0.23	-2.0
1,707,236	-		BBR_RS17510	0.26	-3.3
1,707,243	+		BBR_RS17510	0.27	-3.5
1,707,269	+		BBR_RS17510	0.29	-2.2
1,707,298	+		BBR_RS17510	0.32	-4.2
1,707,365	+		BBR_RS17510	0.38	-1.5
1,707,365	+		BBR_RS17510	0.38	-2.3
1,707,383	-		BBR_RS17510	0.40	-2.9
1,707,445	-		BBR_RS17510	0.46	-3.3
1,707,445	-		BBR_RS17510	0.46	-3.2
1,707,446	+		BBR_RS17510	0.46	-1.4
1,707,447	+		BBR_RS17510	0.46	-2.8
1,707,476	-		BBR_RS17510	0.49	-0.8
1,707,537	+		BBR_RS17510	0.55	-1.2
1,707,547	+		BBR_RS17510	0.56	-2.0
1,707,581	-		BBR_RS17510	0.59	-0.5
1,707,619	+		BBR_RS17510	0.63	+0.1
1,707,708	+		BBR_RS17510	0.71	+2.5
1,707,718	+		BBR_RS17510	0.72	-1.9
1,707,774	+		BBR_RS17510	0.78	-1.1
1,707,784	-		BBR_RS17510	0.79	+0.9
1,707,784	-		BBR_RS17510	0.79	-1.6
1,707,804	+		BBR_RS17510	0.81	+0.5
1,707,815	+		BBR_RS17510	0.82	-2.6
1,707,882	-		BBR_RS17510	0.88	-1.1
1,707,907	+				+0.2
1,707,912	+				-1.2
1,707,914	+				-3.8
1,707,917	-				-1.8
1,707,919	+				-2.9
1,707,919	+				-1.5
1,707,919	+				-1.1
1,707,920	-				+1.0
1,707,927	-				-2.3