Experiment: mouse 1; day 1; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13620 and BBR_RS13625 are separated by 54 nucleotides BBR_RS13625 and BBR_RS13630 are separated by 187 nucleotides BBR_RS13630 and BBR_RS13635 are separated by 1 nucleotides
BBR_RS13620: BBR_RS13620 - elongation factor P, at 828,581 to 829,144
_RS13620
BBR_RS13625: BBR_RS13625 - transcription antitermination factor NusB, at 829,199 to 829,729
_RS13625
BBR_RS13630: BBR_RS13630 - carbamoyl-phosphate synthase small subunit, at 829,917 to 831,140
_RS13630
BBR_RS13635: BBR_RS13635 - carbamoyl-phosphate synthase large subunit, at 831,142 to 834,525
_RS13635
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 829.156 kb on + strand at 829.189 kb on + strand at 829.582 kb on + strand, within BBR_RS13625 at 829.582 kb on + strand, within BBR_RS13625 at 829.646 kb on + strand, within BBR_RS13625 at 829.647 kb on + strand, within BBR_RS13625 at 829.651 kb on + strand, within BBR_RS13625 at 829.714 kb on + strand at 829.868 kb on - strand at 829.931 kb on + strand at 829.974 kb on + strand at 830.002 kb on + strand at 830.165 kb on + strand, within BBR_RS13630 at 830.180 kb on + strand, within BBR_RS13630 at 830.194 kb on + strand, within BBR_RS13630 at 830.334 kb on + strand, within BBR_RS13630 at 830.393 kb on + strand, within BBR_RS13630 at 830.393 kb on + strand, within BBR_RS13630 at 830.401 kb on - strand, within BBR_RS13630 at 830.448 kb on + strand, within BBR_RS13630 at 830.449 kb on + strand, within BBR_RS13630 at 830.449 kb on + strand, within BBR_RS13630 at 830.483 kb on + strand, within BBR_RS13630 at 830.491 kb on + strand, within BBR_RS13630 at 830.493 kb on + strand, within BBR_RS13630 at 830.687 kb on - strand, within BBR_RS13630 at 830.751 kb on + strand, within BBR_RS13630 at 830.871 kb on + strand, within BBR_RS13630 at 830.871 kb on + strand, within BBR_RS13630 at 830.879 kb on - strand, within BBR_RS13630 at 830.879 kb on - strand, within BBR_RS13630 at 831.006 kb on + strand, within BBR_RS13630 at 831.014 kb on - strand, within BBR_RS13630 at 831.016 kb on + strand, within BBR_RS13630 at 831.097 kb on - strand at 831.114 kb on + strand at 831.140 kb on - strand at 831.300 kb on + strand at 831.420 kb on + strand at 831.497 kb on + strand, within BBR_RS13635 at 831.532 kb on - strand, within BBR_RS13635 at 831.593 kb on + strand, within BBR_RS13635 at 831.593 kb on + strand, within BBR_RS13635 at 831.601 kb on - strand, within BBR_RS13635 at 831.601 kb on - strand, within BBR_RS13635 at 831.601 kb on - strand, within BBR_RS13635 at 831.601 kb on - strand, within BBR_RS13635 at 831.601 kb on - strand, within BBR_RS13635 at 831.899 kb on + strand, within BBR_RS13635 at 831.922 kb on + strand, within BBR_RS13635 at 832.008 kb on + strand, within BBR_RS13635 at 832.045 kb on - strand, within BBR_RS13635
Per-strain Table
Position Strand Gene LocusTag Fraction mouse 1; day 1; diet=StandardDiet; sample=FecalPellet remove 829,156 + -1.1 829,189 + -3.1 829,582 + BBR_RS13625 0.72 +0.4 829,582 + BBR_RS13625 0.72 +1.3 829,646 + BBR_RS13625 0.84 +1.5 829,647 + BBR_RS13625 0.84 -0.1 829,651 + BBR_RS13625 0.85 +0.0 829,714 + +0.7 829,868 - -1.7 829,931 + -1.0 829,974 + -1.4 830,002 + -0.5 830,165 + BBR_RS13630 0.20 -1.4 830,180 + BBR_RS13630 0.21 -0.3 830,194 + BBR_RS13630 0.23 +0.0 830,334 + BBR_RS13630 0.34 +1.3 830,393 + BBR_RS13630 0.39 -1.0 830,393 + BBR_RS13630 0.39 +0.0 830,401 - BBR_RS13630 0.40 +0.3 830,448 + BBR_RS13630 0.43 -0.8 830,449 + BBR_RS13630 0.43 +0.3 830,449 + BBR_RS13630 0.43 +0.7 830,483 + BBR_RS13630 0.46 +1.3 830,491 + BBR_RS13630 0.47 -0.5 830,493 + BBR_RS13630 0.47 -1.3 830,687 - BBR_RS13630 0.63 +0.0 830,751 + BBR_RS13630 0.68 -0.3 830,871 + BBR_RS13630 0.78 +0.7 830,871 + BBR_RS13630 0.78 +1.3 830,879 - BBR_RS13630 0.79 +0.0 830,879 - BBR_RS13630 0.79 +0.3 831,006 + BBR_RS13630 0.89 -0.7 831,014 - BBR_RS13630 0.90 +0.3 831,016 + BBR_RS13630 0.90 -1.8 831,097 - +0.3 831,114 + -3.5 831,140 - +2.3 831,300 + -1.6 831,420 + +1.3 831,497 + BBR_RS13635 0.10 -1.0 831,532 - BBR_RS13635 0.12 +2.3 831,593 + BBR_RS13635 0.13 +1.3 831,593 + BBR_RS13635 0.13 +0.0 831,601 - BBR_RS13635 0.14 +0.7 831,601 - BBR_RS13635 0.14 -0.7 831,601 - BBR_RS13635 0.14 +1.3 831,601 - BBR_RS13635 0.14 +0.0 831,601 - BBR_RS13635 0.14 +0.3 831,899 + BBR_RS13635 0.22 +0.7 831,922 + BBR_RS13635 0.23 +1.3 832,008 + BBR_RS13635 0.26 +1.3 832,045 - BBR_RS13635 0.27 +0.0
Or see this region's nucleotide sequence