Experiment: mouse 1; day 1; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13370 and BBR_RS13375 are separated by 26 nucleotides BBR_RS13375 and BBR_RS13380 are separated by 116 nucleotides
BBR_RS13370: BBR_RS13370 - phosphoribosylamine--glycine ligase, at 772,512 to 773,780
_RS13370
BBR_RS13375: BBR_RS13375 - phosphoribosylformylglycinamidine cyclo-ligase, at 773,807 to 774,844
_RS13375
BBR_RS13380: BBR_RS13380 - amidophosphoribosyltransferase, at 774,961 to 776,472
_RS13380
Position (kb) 773
774
775 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 773.309 kb on + strand, within BBR_RS13370 at 773.415 kb on - strand, within BBR_RS13370 at 773.415 kb on - strand, within BBR_RS13370 at 773.590 kb on - strand, within BBR_RS13370 at 773.594 kb on + strand, within BBR_RS13370 at 773.620 kb on - strand, within BBR_RS13370 at 773.644 kb on - strand, within BBR_RS13370 at 773.710 kb on + strand at 773.854 kb on - strand at 773.932 kb on - strand, within BBR_RS13375 at 773.932 kb on - strand, within BBR_RS13375 at 773.966 kb on - strand, within BBR_RS13375 at 774.101 kb on + strand, within BBR_RS13375 at 774.122 kb on - strand, within BBR_RS13375 at 774.124 kb on + strand, within BBR_RS13375 at 774.137 kb on - strand, within BBR_RS13375 at 774.137 kb on - strand, within BBR_RS13375 at 774.164 kb on - strand, within BBR_RS13375 at 774.166 kb on + strand, within BBR_RS13375 at 774.232 kb on - strand, within BBR_RS13375 at 774.256 kb on - strand, within BBR_RS13375 at 774.284 kb on - strand, within BBR_RS13375 at 774.284 kb on - strand, within BBR_RS13375 at 774.435 kb on + strand, within BBR_RS13375 at 774.453 kb on - strand, within BBR_RS13375 at 774.491 kb on - strand, within BBR_RS13375 at 774.558 kb on - strand, within BBR_RS13375 at 774.679 kb on - strand, within BBR_RS13375 at 774.884 kb on - strand at 774.935 kb on + strand at 774.968 kb on - strand at 774.983 kb on + strand at 774.991 kb on - strand at 774.991 kb on - strand at 774.991 kb on - strand at 774.991 kb on - strand at 774.991 kb on - strand at 774.991 kb on - strand at 774.991 kb on - strand at 774.993 kb on - strand at 775.010 kb on + strand at 775.018 kb on - strand at 775.018 kb on - strand at 775.018 kb on - strand at 775.018 kb on - strand at 775.033 kb on - strand at 775.035 kb on - strand at 775.043 kb on - strand at 775.053 kb on - strand at 775.053 kb on - strand at 775.053 kb on - strand at 775.053 kb on - strand at 775.061 kb on - strand at 775.143 kb on - strand, within BBR_RS13380 at 775.248 kb on - strand, within BBR_RS13380 at 775.326 kb on - strand, within BBR_RS13380 at 775.424 kb on + strand, within BBR_RS13380 at 775.426 kb on - strand, within BBR_RS13380 at 775.431 kb on - strand, within BBR_RS13380 at 775.564 kb on - strand, within BBR_RS13380 at 775.575 kb on - strand, within BBR_RS13380 at 775.599 kb on - strand, within BBR_RS13380 at 775.682 kb on - strand, within BBR_RS13380 at 775.717 kb on - strand, within BBR_RS13380 at 775.717 kb on - strand, within BBR_RS13380 at 775.750 kb on + strand, within BBR_RS13380 at 775.759 kb on + strand, within BBR_RS13380 at 775.814 kb on - strand, within BBR_RS13380 at 775.827 kb on - strand, within BBR_RS13380 at 775.832 kb on - strand, within BBR_RS13380 at 775.837 kb on - strand, within BBR_RS13380
Per-strain Table
Position Strand Gene LocusTag Fraction mouse 1; day 1; diet=StandardDiet; sample=FecalPellet remove 773,309 + BBR_RS13370 0.63 -1.0 773,415 - BBR_RS13370 0.71 -2.0 773,415 - BBR_RS13370 0.71 -0.5 773,590 - BBR_RS13370 0.85 +0.0 773,594 + BBR_RS13370 0.85 -0.5 773,620 - BBR_RS13370 0.87 -1.0 773,644 - BBR_RS13370 0.89 +0.8 773,710 + -0.5 773,854 - -1.6 773,932 - BBR_RS13375 0.12 -3.4 773,932 - BBR_RS13375 0.12 -2.4 773,966 - BBR_RS13375 0.15 -3.2 774,101 + BBR_RS13375 0.28 +1.3 774,122 - BBR_RS13375 0.30 -0.7 774,124 + BBR_RS13375 0.31 +0.3 774,137 - BBR_RS13375 0.32 -2.5 774,137 - BBR_RS13375 0.32 -1.8 774,164 - BBR_RS13375 0.34 -1.1 774,166 + BBR_RS13375 0.35 -2.1 774,232 - BBR_RS13375 0.41 -2.2 774,256 - BBR_RS13375 0.43 -1.7 774,284 - BBR_RS13375 0.46 -1.5 774,284 - BBR_RS13375 0.46 -2.8 774,435 + BBR_RS13375 0.61 -2.5 774,453 - BBR_RS13375 0.62 -2.5 774,491 - BBR_RS13375 0.66 -2.9 774,558 - BBR_RS13375 0.72 -2.6 774,679 - BBR_RS13375 0.84 -2.2 774,884 - -0.2 774,935 + +0.8 774,968 - +0.5 774,983 + -1.2 774,991 - -0.9 774,991 - -3.2 774,991 - -1.5 774,991 - +0.7 774,991 - +0.1 774,991 - -1.1 774,991 - -0.4 774,993 - +0.3 775,010 + -2.4 775,018 - -2.1 775,018 - +0.0 775,018 - -0.8 775,018 - -2.4 775,033 - -0.9 775,035 - -1.4 775,043 - -0.9 775,053 - -3.1 775,053 - -1.0 775,053 - -0.2 775,053 - -0.5 775,061 - -1.8 775,143 - BBR_RS13380 0.12 -2.5 775,248 - BBR_RS13380 0.19 -2.3 775,326 - BBR_RS13380 0.24 -2.5 775,424 + BBR_RS13380 0.31 +2.3 775,426 - BBR_RS13380 0.31 -2.8 775,431 - BBR_RS13380 0.31 -2.4 775,564 - BBR_RS13380 0.40 -1.5 775,575 - BBR_RS13380 0.41 -2.9 775,599 - BBR_RS13380 0.42 -3.8 775,682 - BBR_RS13380 0.48 -3.4 775,717 - BBR_RS13380 0.50 -2.8 775,717 - BBR_RS13380 0.50 -4.0 775,750 + BBR_RS13380 0.52 -2.8 775,759 + BBR_RS13380 0.53 -0.5 775,814 - BBR_RS13380 0.56 -3.4 775,827 - BBR_RS13380 0.57 -2.2 775,832 - BBR_RS13380 0.58 -2.0 775,837 - BBR_RS13380 0.58 -1.9
Or see this region's nucleotide sequence