Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12785

Experiment: mouse 1; day 1; diet=StandardDiet; sample=FecalPellet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12775 and BBR_RS12780 are separated by 0 nucleotidesBBR_RS12780 and BBR_RS12785 are separated by 63 nucleotidesBBR_RS12785 and BBR_RS12790 overlap by 4 nucleotidesBBR_RS12790 and BBR_RS20520 are separated by 144 nucleotides BBR_RS12775: BBR_RS12775 - hypothetical protein, at 617,653 to 618,066 _RS12775 BBR_RS12780: BBR_RS12780 - hypothetical protein, at 618,067 to 618,603 _RS12780 BBR_RS12785: BBR_RS12785 - transcriptional regulator, at 618,667 to 619,161 _RS12785 BBR_RS12790: BBR_RS12790 - hypothetical protein, at 619,158 to 619,547 _RS12790 BBR_RS20520: BBR_RS20520 - symporter, at 619,692 to 620,784 _RS20520 Position (kb) 618 619 620Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 617.672 kb on + strandat 617.680 kb on - strandat 617.735 kb on + strand, within BBR_RS12775at 617.803 kb on - strand, within BBR_RS12775at 617.863 kb on + strand, within BBR_RS12775at 617.865 kb on - strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.936 kb on + strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 618.019 kb on + strand, within BBR_RS12775at 618.021 kb on + strand, within BBR_RS12775at 618.038 kb on + strandat 618.055 kb on + strandat 618.110 kb on - strandat 618.115 kb on - strandat 618.157 kb on - strand, within BBR_RS12780at 618.169 kb on - strand, within BBR_RS12780at 618.264 kb on + strand, within BBR_RS12780at 618.317 kb on + strand, within BBR_RS12780at 618.317 kb on + strand, within BBR_RS12780at 618.333 kb on - strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.343 kb on - strand, within BBR_RS12780at 618.408 kb on + strand, within BBR_RS12780at 618.408 kb on + strand, within BBR_RS12780at 618.434 kb on + strand, within BBR_RS12780at 618.449 kb on + strand, within BBR_RS12780at 618.481 kb on + strand, within BBR_RS12780at 618.588 kb on + strandat 618.593 kb on + strandat 618.657 kb on + strandat 618.657 kb on + strandat 618.665 kb on - strandat 618.763 kb on + strand, within BBR_RS12785at 618.947 kb on + strand, within BBR_RS12785at 619.071 kb on + strand, within BBR_RS12785at 619.076 kb on + strand, within BBR_RS12785at 619.103 kb on + strand, within BBR_RS12785at 619.103 kb on + strand, within BBR_RS12785at 619.106 kb on + strand, within BBR_RS12785at 619.112 kb on - strandat 619.163 kb on + strandat 619.163 kb on + strandat 619.547 kb on + strandat 619.550 kb on - strandat 619.582 kb on + strandat 619.585 kb on - strandat 619.651 kb on - strandat 619.748 kb on + strandat 619.760 kb on - strandat 619.764 kb on + strandat 619.797 kb on - strandat 619.800 kb on + strandat 619.836 kb on + strand, within BBR_RS20520at 619.838 kb on - strand, within BBR_RS20520at 619.917 kb on - strand, within BBR_RS20520at 619.929 kb on - strand, within BBR_RS20520at 619.931 kb on + strand, within BBR_RS20520at 619.936 kb on + strand, within BBR_RS20520at 619.939 kb on - strand, within BBR_RS20520at 619.944 kb on - strand, within BBR_RS20520at 619.954 kb on - strand, within BBR_RS20520at 619.954 kb on - strand, within BBR_RS20520at 619.954 kb on - strand, within BBR_RS20520at 619.969 kb on + strand, within BBR_RS20520at 619.976 kb on + strand, within BBR_RS20520at 619.977 kb on - strand, within BBR_RS20520at 619.977 kb on - strand, within BBR_RS20520at 619.984 kb on - strand, within BBR_RS20520at 619.984 kb on - strand, within BBR_RS20520at 620.062 kb on - strand, within BBR_RS20520at 620.082 kb on + strand, within BBR_RS20520at 620.085 kb on - strand, within BBR_RS20520at 620.099 kb on + strand, within BBR_RS20520at 620.126 kb on + strand, within BBR_RS20520at 620.149 kb on + strand, within BBR_RS20520at 620.156 kb on - strand, within BBR_RS20520

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Per-strain Table

Position Strand Gene LocusTag Fraction mouse 1; day 1; diet=StandardDiet; sample=FecalPellet
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617,672 + -1.1
617,680 - +0.5
617,735 + BBR_RS12775 0.20 -2.3
617,803 - BBR_RS12775 0.36 -1.5
617,863 + BBR_RS12775 0.51 -1.1
617,865 - BBR_RS12775 0.51 +1.7
617,928 + BBR_RS12775 0.66 +0.7
617,928 + BBR_RS12775 0.66 -2.3
617,928 + BBR_RS12775 0.66 +0.6
617,928 + BBR_RS12775 0.66 -1.9
617,928 + BBR_RS12775 0.66 +0.3
617,936 + BBR_RS12775 0.68 -2.1
617,936 - BBR_RS12775 0.68 +2.9
617,936 - BBR_RS12775 0.68 -1.4
617,936 - BBR_RS12775 0.68 -2.6
618,019 + BBR_RS12775 0.88 +1.4
618,021 + BBR_RS12775 0.89 +0.3
618,038 + -0.3
618,055 + -1.5
618,110 - -1.4
618,115 - -0.7
618,157 - BBR_RS12780 0.17 -1.6
618,169 - BBR_RS12780 0.19 -2.0
618,264 + BBR_RS12780 0.37 +0.3
618,317 + BBR_RS12780 0.47 +0.3
618,317 + BBR_RS12780 0.47 -2.0
618,333 - BBR_RS12780 0.50 -0.4
618,335 + BBR_RS12780 0.50 -0.8
618,335 + BBR_RS12780 0.50 -1.0
618,335 + BBR_RS12780 0.50 +0.6
618,343 - BBR_RS12780 0.51 -0.6
618,408 + BBR_RS12780 0.64 +0.9
618,408 + BBR_RS12780 0.64 -1.8
618,434 + BBR_RS12780 0.68 -1.1
618,449 + BBR_RS12780 0.71 -0.7
618,481 + BBR_RS12780 0.77 -0.9
618,588 + -3.1
618,593 + -1.7
618,657 + +0.7
618,657 + -0.4
618,665 - +1.0
618,763 + BBR_RS12785 0.19 -2.1
618,947 + BBR_RS12785 0.57 +0.4
619,071 + BBR_RS12785 0.82 -3.6
619,076 + BBR_RS12785 0.83 -0.4
619,103 + BBR_RS12785 0.88 -1.9
619,103 + BBR_RS12785 0.88 -3.1
619,106 + BBR_RS12785 0.89 -3.1
619,112 - +2.3
619,163 + -0.2
619,163 + -3.5
619,547 + -1.0
619,550 - -1.6
619,582 + -0.1
619,585 - +0.7
619,651 - +0.6
619,748 + -0.6
619,760 - -0.1
619,764 + +0.2
619,797 - -0.9
619,800 + +0.7
619,836 + BBR_RS20520 0.13 -2.8
619,838 - BBR_RS20520 0.13 -1.6
619,917 - BBR_RS20520 0.21 +0.9
619,929 - BBR_RS20520 0.22 -0.4
619,931 + BBR_RS20520 0.22 +1.1
619,936 + BBR_RS20520 0.22 -1.3
619,939 - BBR_RS20520 0.23 -0.4
619,944 - BBR_RS20520 0.23 -0.5
619,954 - BBR_RS20520 0.24 -0.7
619,954 - BBR_RS20520 0.24 -0.1
619,954 - BBR_RS20520 0.24 +0.1
619,969 + BBR_RS20520 0.25 -0.9
619,976 + BBR_RS20520 0.26 -1.3
619,977 - BBR_RS20520 0.26 -1.2
619,977 - BBR_RS20520 0.26 +0.2
619,984 - BBR_RS20520 0.27 -0.3
619,984 - BBR_RS20520 0.27 +0.5
620,062 - BBR_RS20520 0.34 -1.6
620,082 + BBR_RS20520 0.36 -0.3
620,085 - BBR_RS20520 0.36 +1.3
620,099 + BBR_RS20520 0.37 +0.8
620,126 + BBR_RS20520 0.40 -0.8
620,149 + BBR_RS20520 0.42 -0.3
620,156 - BBR_RS20520 0.42 +1.2

Or see this region's nucleotide sequence