Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12660

Experiment: mouse 1; day 1; diet=StandardDiet; sample=FecalPellet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12655 and BBR_RS20725 are separated by 85 nucleotidesBBR_RS20725 and BBR_RS12660 are separated by 106 nucleotidesBBR_RS12660 and BBR_RS12665 are separated by 129 nucleotides BBR_RS12655: BBR_RS12655 - glycosyltransferase family 2 protein, at 595,069 to 596,040 _RS12655 BBR_RS20725: BBR_RS20725 - hypothetical protein, at 596,126 to 596,362 _RS20725 BBR_RS12660: BBR_RS12660 - EpsG family protein, at 596,469 to 597,527 _RS12660 BBR_RS12665: BBR_RS12665 - acyltransferase, at 597,657 to 598,724 _RS12665 Position (kb) 596 597 598Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 595.481 kb on - strand, within BBR_RS12655at 595.493 kb on + strand, within BBR_RS12655at 595.610 kb on + strand, within BBR_RS12655at 595.615 kb on + strand, within BBR_RS12655at 595.615 kb on + strand, within BBR_RS12655at 595.645 kb on - strand, within BBR_RS12655at 595.677 kb on + strand, within BBR_RS12655at 595.683 kb on + strand, within BBR_RS12655at 595.702 kb on - strand, within BBR_RS12655at 595.721 kb on + strand, within BBR_RS12655at 595.723 kb on + strand, within BBR_RS12655at 595.728 kb on + strand, within BBR_RS12655at 595.736 kb on - strand, within BBR_RS12655at 595.746 kb on + strand, within BBR_RS12655at 595.795 kb on - strand, within BBR_RS12655at 595.818 kb on - strand, within BBR_RS12655at 595.819 kb on + strand, within BBR_RS12655at 595.819 kb on + strand, within BBR_RS12655at 595.824 kb on + strand, within BBR_RS12655at 595.841 kb on + strand, within BBR_RS12655at 595.844 kb on + strand, within BBR_RS12655at 595.850 kb on + strand, within BBR_RS12655at 595.858 kb on - strand, within BBR_RS12655at 595.881 kb on + strand, within BBR_RS12655at 595.888 kb on + strand, within BBR_RS12655at 595.888 kb on + strand, within BBR_RS12655at 595.895 kb on + strand, within BBR_RS12655at 595.895 kb on + strand, within BBR_RS12655at 595.910 kb on - strand, within BBR_RS12655at 595.910 kb on - strand, within BBR_RS12655at 595.929 kb on - strand, within BBR_RS12655at 595.929 kb on - strand, within BBR_RS12655at 595.942 kb on - strand, within BBR_RS12655at 595.942 kb on - strand, within BBR_RS12655at 595.944 kb on + strandat 596.004 kb on - strandat 596.006 kb on + strandat 596.105 kb on - strandat 596.110 kb on + strandat 596.126 kb on - strandat 596.156 kb on + strand, within BBR_RS20725at 596.164 kb on + strand, within BBR_RS20725at 596.171 kb on - strand, within BBR_RS20725at 596.204 kb on + strand, within BBR_RS20725at 596.204 kb on - strand, within BBR_RS20725at 596.222 kb on - strand, within BBR_RS20725at 596.267 kb on - strand, within BBR_RS20725at 596.278 kb on + strand, within BBR_RS20725at 596.286 kb on - strand, within BBR_RS20725at 596.288 kb on + strand, within BBR_RS20725at 596.288 kb on + strand, within BBR_RS20725at 596.301 kb on - strand, within BBR_RS20725at 596.306 kb on + strand, within BBR_RS20725at 596.306 kb on - strand, within BBR_RS20725at 596.306 kb on - strand, within BBR_RS20725at 596.320 kb on - strand, within BBR_RS20725at 596.332 kb on + strand, within BBR_RS20725at 596.334 kb on + strand, within BBR_RS20725at 596.334 kb on + strand, within BBR_RS20725at 596.334 kb on + strand, within BBR_RS20725at 596.362 kb on - strandat 596.369 kb on + strandat 596.384 kb on + strandat 596.493 kb on - strandat 596.546 kb on + strandat 596.610 kb on + strand, within BBR_RS12660at 596.668 kb on - strand, within BBR_RS12660at 596.670 kb on + strand, within BBR_RS12660at 596.696 kb on + strand, within BBR_RS12660at 596.746 kb on - strand, within BBR_RS12660at 596.887 kb on - strand, within BBR_RS12660at 596.915 kb on - strand, within BBR_RS12660at 597.031 kb on + strand, within BBR_RS12660at 597.038 kb on + strand, within BBR_RS12660at 597.038 kb on + strand, within BBR_RS12660at 597.042 kb on - strand, within BBR_RS12660at 597.046 kb on - strand, within BBR_RS12660at 597.046 kb on - strand, within BBR_RS12660at 597.046 kb on - strand, within BBR_RS12660at 597.051 kb on - strand, within BBR_RS12660at 597.098 kb on - strand, within BBR_RS12660at 597.123 kb on - strand, within BBR_RS12660at 597.123 kb on - strand, within BBR_RS12660at 597.138 kb on + strand, within BBR_RS12660at 597.139 kb on + strand, within BBR_RS12660at 597.139 kb on + strand, within BBR_RS12660at 597.172 kb on + strand, within BBR_RS12660at 597.177 kb on + strand, within BBR_RS12660at 597.180 kb on - strand, within BBR_RS12660at 597.185 kb on - strand, within BBR_RS12660at 597.185 kb on - strand, within BBR_RS12660at 597.204 kb on + strand, within BBR_RS12660at 597.212 kb on + strand, within BBR_RS12660at 597.256 kb on - strand, within BBR_RS12660at 597.256 kb on - strand, within BBR_RS12660at 597.256 kb on - strand, within BBR_RS12660at 597.329 kb on - strand, within BBR_RS12660at 597.339 kb on + strand, within BBR_RS12660at 597.340 kb on - strand, within BBR_RS12660at 597.342 kb on - strand, within BBR_RS12660at 597.348 kb on - strand, within BBR_RS12660at 597.348 kb on - strand, within BBR_RS12660at 597.394 kb on - strand, within BBR_RS12660at 597.402 kb on - strand, within BBR_RS12660at 597.522 kb on + strandat 597.578 kb on + strandat 597.639 kb on + strandat 597.639 kb on + strandat 597.639 kb on + strandat 597.645 kb on - strandat 597.647 kb on - strandat 597.651 kb on + strandat 597.651 kb on + strandat 597.659 kb on - strandat 597.662 kb on + strandat 597.662 kb on + strandat 597.667 kb on + strandat 597.770 kb on + strand, within BBR_RS12665at 597.770 kb on + strand, within BBR_RS12665at 597.770 kb on + strand, within BBR_RS12665at 597.778 kb on - strand, within BBR_RS12665at 597.785 kb on - strand, within BBR_RS12665at 597.791 kb on + strand, within BBR_RS12665at 597.791 kb on + strand, within BBR_RS12665at 597.791 kb on + strand, within BBR_RS12665at 597.797 kb on - strand, within BBR_RS12665at 597.835 kb on - strand, within BBR_RS12665at 597.850 kb on + strand, within BBR_RS12665at 597.858 kb on - strand, within BBR_RS12665at 597.881 kb on + strand, within BBR_RS12665at 597.893 kb on + strand, within BBR_RS12665at 597.905 kb on + strand, within BBR_RS12665at 597.926 kb on - strand, within BBR_RS12665at 597.926 kb on - strand, within BBR_RS12665at 597.930 kb on + strand, within BBR_RS12665at 597.932 kb on + strand, within BBR_RS12665at 597.941 kb on + strand, within BBR_RS12665at 597.965 kb on + strand, within BBR_RS12665at 597.980 kb on + strand, within BBR_RS12665at 598.034 kb on + strand, within BBR_RS12665at 598.034 kb on + strand, within BBR_RS12665at 598.034 kb on + strand, within BBR_RS12665at 598.034 kb on + strand, within BBR_RS12665at 598.041 kb on + strand, within BBR_RS12665at 598.042 kb on - strand, within BBR_RS12665at 598.042 kb on - strand, within BBR_RS12665at 598.042 kb on - strand, within BBR_RS12665at 598.042 kb on - strand, within BBR_RS12665at 598.044 kb on + strand, within BBR_RS12665at 598.044 kb on + strand, within BBR_RS12665at 598.044 kb on + strand, within BBR_RS12665at 598.044 kb on + strand, within BBR_RS12665at 598.052 kb on - strand, within BBR_RS12665at 598.067 kb on + strand, within BBR_RS12665at 598.067 kb on - strand, within BBR_RS12665at 598.074 kb on + strand, within BBR_RS12665at 598.074 kb on + strand, within BBR_RS12665at 598.074 kb on + strand, within BBR_RS12665at 598.074 kb on + strand, within BBR_RS12665at 598.074 kb on + strand, within BBR_RS12665at 598.075 kb on - strand, within BBR_RS12665at 598.082 kb on - strand, within BBR_RS12665at 598.084 kb on + strand, within BBR_RS12665at 598.090 kb on + strand, within BBR_RS12665at 598.090 kb on + strand, within BBR_RS12665at 598.091 kb on - strand, within BBR_RS12665at 598.098 kb on - strand, within BBR_RS12665at 598.098 kb on - strand, within BBR_RS12665at 598.132 kb on + strand, within BBR_RS12665at 598.152 kb on - strand, within BBR_RS12665at 598.180 kb on + strand, within BBR_RS12665at 598.180 kb on + strand, within BBR_RS12665at 598.185 kb on - strand, within BBR_RS12665at 598.188 kb on - strand, within BBR_RS12665at 598.188 kb on - strand, within BBR_RS12665at 598.188 kb on - strand, within BBR_RS12665at 598.188 kb on - strand, within BBR_RS12665at 598.203 kb on - strand, within BBR_RS12665at 598.238 kb on + strand, within BBR_RS12665at 598.260 kb on + strand, within BBR_RS12665at 598.260 kb on + strand, within BBR_RS12665at 598.260 kb on + strand, within BBR_RS12665at 598.375 kb on + strand, within BBR_RS12665at 598.379 kb on + strand, within BBR_RS12665at 598.384 kb on - strand, within BBR_RS12665at 598.387 kb on + strand, within BBR_RS12665at 598.387 kb on - strand, within BBR_RS12665at 598.395 kb on - strand, within BBR_RS12665at 598.402 kb on + strand, within BBR_RS12665at 598.405 kb on - strand, within BBR_RS12665at 598.410 kb on + strand, within BBR_RS12665at 598.412 kb on + strand, within BBR_RS12665at 598.412 kb on + strand, within BBR_RS12665at 598.421 kb on + strand, within BBR_RS12665at 598.441 kb on - strand, within BBR_RS12665at 598.446 kb on + strand, within BBR_RS12665at 598.447 kb on + strand, within BBR_RS12665at 598.457 kb on + strand, within BBR_RS12665at 598.477 kb on + strand, within BBR_RS12665at 598.485 kb on - strand, within BBR_RS12665at 598.490 kb on + strand, within BBR_RS12665at 598.491 kb on + strand, within BBR_RS12665at 598.491 kb on + strand, within BBR_RS12665at 598.499 kb on - strand, within BBR_RS12665at 598.499 kb on - strand, within BBR_RS12665at 598.499 kb on - strand, within BBR_RS12665at 598.501 kb on + strand, within BBR_RS12665at 598.501 kb on + strand, within BBR_RS12665at 598.509 kb on - strand, within BBR_RS12665at 598.516 kb on + strand, within BBR_RS12665

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Per-strain Table

Position Strand Gene LocusTag Fraction mouse 1; day 1; diet=StandardDiet; sample=FecalPellet
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595,481 - BBR_RS12655 0.42 -0.5
595,493 + BBR_RS12655 0.44 -0.6
595,610 + BBR_RS12655 0.56 -1.2
595,615 + BBR_RS12655 0.56 -2.5
595,615 + BBR_RS12655 0.56 +0.9
595,645 - BBR_RS12655 0.59 -2.4
595,677 + BBR_RS12655 0.63 -0.1
595,683 + BBR_RS12655 0.63 +0.7
595,702 - BBR_RS12655 0.65 -0.6
595,721 + BBR_RS12655 0.67 +0.4
595,723 + BBR_RS12655 0.67 -0.8
595,728 + BBR_RS12655 0.68 +0.3
595,736 - BBR_RS12655 0.69 -1.5
595,746 + BBR_RS12655 0.70 -2.3
595,795 - BBR_RS12655 0.75 -1.5
595,818 - BBR_RS12655 0.77 +0.8
595,819 + BBR_RS12655 0.77 -1.4
595,819 + BBR_RS12655 0.77 +1.5
595,824 + BBR_RS12655 0.78 -0.3
595,841 + BBR_RS12655 0.79 -0.5
595,844 + BBR_RS12655 0.80 -1.8
595,850 + BBR_RS12655 0.80 +0.7
595,858 - BBR_RS12655 0.81 -0.0
595,881 + BBR_RS12655 0.84 -0.2
595,888 + BBR_RS12655 0.84 +0.2
595,888 + BBR_RS12655 0.84 -2.3
595,895 + BBR_RS12655 0.85 +0.9
595,895 + BBR_RS12655 0.85 -0.3
595,910 - BBR_RS12655 0.87 -3.0
595,910 - BBR_RS12655 0.87 +0.7
595,929 - BBR_RS12655 0.88 -0.0
595,929 - BBR_RS12655 0.88 +0.3
595,942 - BBR_RS12655 0.90 -1.0
595,942 - BBR_RS12655 0.90 +0.5
595,944 + +0.3
596,004 - +0.3
596,006 + +0.4
596,105 - +0.3
596,110 + -2.4
596,126 - +0.1
596,156 + BBR_RS20725 0.13 -1.8
596,164 + BBR_RS20725 0.16 -1.2
596,171 - BBR_RS20725 0.19 -0.0
596,204 + BBR_RS20725 0.33 -0.5
596,204 - BBR_RS20725 0.33 -0.7
596,222 - BBR_RS20725 0.41 -2.1
596,267 - BBR_RS20725 0.59 -1.3
596,278 + BBR_RS20725 0.64 -1.3
596,286 - BBR_RS20725 0.68 +1.7
596,288 + BBR_RS20725 0.68 -1.0
596,288 + BBR_RS20725 0.68 -0.1
596,301 - BBR_RS20725 0.74 -1.2
596,306 + BBR_RS20725 0.76 -1.7
596,306 - BBR_RS20725 0.76 -3.5
596,306 - BBR_RS20725 0.76 -1.4
596,320 - BBR_RS20725 0.82 -0.9
596,332 + BBR_RS20725 0.87 -2.2
596,334 + BBR_RS20725 0.88 -0.4
596,334 + BBR_RS20725 0.88 +0.6
596,334 + BBR_RS20725 0.88 +1.9
596,362 - -1.0
596,369 + -1.5
596,384 + -2.3
596,493 - -0.4
596,546 + +0.3
596,610 + BBR_RS12660 0.13 -2.3
596,668 - BBR_RS12660 0.19 -0.0
596,670 + BBR_RS12660 0.19 -0.5
596,696 + BBR_RS12660 0.21 -1.2
596,746 - BBR_RS12660 0.26 -1.6
596,887 - BBR_RS12660 0.39 +1.7
596,915 - BBR_RS12660 0.42 -2.1
597,031 + BBR_RS12660 0.53 +0.4
597,038 + BBR_RS12660 0.54 -2.7
597,038 + BBR_RS12660 0.54 -0.4
597,042 - BBR_RS12660 0.54 -0.8
597,046 - BBR_RS12660 0.54 -1.0
597,046 - BBR_RS12660 0.54 -0.9
597,046 - BBR_RS12660 0.54 -0.1
597,051 - BBR_RS12660 0.55 -2.5
597,098 - BBR_RS12660 0.59 -2.2
597,123 - BBR_RS12660 0.62 -0.3
597,123 - BBR_RS12660 0.62 -0.7
597,138 + BBR_RS12660 0.63 +1.1
597,139 + BBR_RS12660 0.63 -2.9
597,139 + BBR_RS12660 0.63 -1.4
597,172 + BBR_RS12660 0.66 -1.4
597,177 + BBR_RS12660 0.67 +2.5
597,180 - BBR_RS12660 0.67 -0.1
597,185 - BBR_RS12660 0.68 -1.5
597,185 - BBR_RS12660 0.68 -2.2
597,204 + BBR_RS12660 0.69 +2.0
597,212 + BBR_RS12660 0.70 -1.6
597,256 - BBR_RS12660 0.74 -1.6
597,256 - BBR_RS12660 0.74 -1.7
597,256 - BBR_RS12660 0.74 +0.0
597,329 - BBR_RS12660 0.81 +0.7
597,339 + BBR_RS12660 0.82 -2.6
597,340 - BBR_RS12660 0.82 -1.1
597,342 - BBR_RS12660 0.82 -1.9
597,348 - BBR_RS12660 0.83 +0.7
597,348 - BBR_RS12660 0.83 -3.1
597,394 - BBR_RS12660 0.87 -1.3
597,402 - BBR_RS12660 0.88 -1.5
597,522 + -2.9
597,578 + +0.4
597,639 + +0.3
597,639 + -1.8
597,639 + -1.9
597,645 - +0.7
597,647 - -0.0
597,651 + +0.1
597,651 + -0.2
597,659 - -1.7
597,662 + +0.1
597,662 + -1.5
597,667 + -1.8
597,770 + BBR_RS12665 0.11 +0.9
597,770 + BBR_RS12665 0.11 -2.8
597,770 + BBR_RS12665 0.11 -2.3
597,778 - BBR_RS12665 0.11 -2.5
597,785 - BBR_RS12665 0.12 -1.4
597,791 + BBR_RS12665 0.13 -0.7
597,791 + BBR_RS12665 0.13 +0.7
597,791 + BBR_RS12665 0.13 -1.2
597,797 - BBR_RS12665 0.13 +0.0
597,835 - BBR_RS12665 0.17 +0.2
597,850 + BBR_RS12665 0.18 +0.4
597,858 - BBR_RS12665 0.19 -3.2
597,881 + BBR_RS12665 0.21 -2.3
597,893 + BBR_RS12665 0.22 -0.6
597,905 + BBR_RS12665 0.23 -2.1
597,926 - BBR_RS12665 0.25 +0.1
597,926 - BBR_RS12665 0.25 -3.9
597,930 + BBR_RS12665 0.26 -0.1
597,932 + BBR_RS12665 0.26 -1.5
597,941 + BBR_RS12665 0.27 -0.1
597,965 + BBR_RS12665 0.29 +1.1
597,980 + BBR_RS12665 0.30 +0.6
598,034 + BBR_RS12665 0.35 -0.3
598,034 + BBR_RS12665 0.35 -1.5
598,034 + BBR_RS12665 0.35 -0.2
598,034 + BBR_RS12665 0.35 -2.6
598,041 + BBR_RS12665 0.36 -3.5
598,042 - BBR_RS12665 0.36 -1.8
598,042 - BBR_RS12665 0.36 -0.1
598,042 - BBR_RS12665 0.36 -2.0
598,042 - BBR_RS12665 0.36 -2.7
598,044 + BBR_RS12665 0.36 +0.1
598,044 + BBR_RS12665 0.36 -0.7
598,044 + BBR_RS12665 0.36 +1.3
598,044 + BBR_RS12665 0.36 -0.4
598,052 - BBR_RS12665 0.37 -0.3
598,067 + BBR_RS12665 0.38 -1.5
598,067 - BBR_RS12665 0.38 -1.4
598,074 + BBR_RS12665 0.39 -3.1
598,074 + BBR_RS12665 0.39 +0.1
598,074 + BBR_RS12665 0.39 +0.7
598,074 + BBR_RS12665 0.39 -0.1
598,074 + BBR_RS12665 0.39 -0.7
598,075 - BBR_RS12665 0.39 -1.2
598,082 - BBR_RS12665 0.40 +1.2
598,084 + BBR_RS12665 0.40 -2.3
598,090 + BBR_RS12665 0.41 -0.8
598,090 + BBR_RS12665 0.41 -2.2
598,091 - BBR_RS12665 0.41 -0.1
598,098 - BBR_RS12665 0.41 -0.8
598,098 - BBR_RS12665 0.41 +0.6
598,132 + BBR_RS12665 0.44 +0.6
598,152 - BBR_RS12665 0.46 -0.9
598,180 + BBR_RS12665 0.49 -1.9
598,180 + BBR_RS12665 0.49 -0.7
598,185 - BBR_RS12665 0.49 +0.3
598,188 - BBR_RS12665 0.50 -2.1
598,188 - BBR_RS12665 0.50 +1.1
598,188 - BBR_RS12665 0.50 -1.4
598,188 - BBR_RS12665 0.50 -1.8
598,203 - BBR_RS12665 0.51 -0.4
598,238 + BBR_RS12665 0.54 -2.2
598,260 + BBR_RS12665 0.56 -1.6
598,260 + BBR_RS12665 0.56 +0.1
598,260 + BBR_RS12665 0.56 +0.5
598,375 + BBR_RS12665 0.67 -1.2
598,379 + BBR_RS12665 0.68 +0.4
598,384 - BBR_RS12665 0.68 -1.2
598,387 + BBR_RS12665 0.68 -0.5
598,387 - BBR_RS12665 0.68 -1.9
598,395 - BBR_RS12665 0.69 -1.9
598,402 + BBR_RS12665 0.70 -0.1
598,405 - BBR_RS12665 0.70 -2.5
598,410 + BBR_RS12665 0.71 -2.8
598,412 + BBR_RS12665 0.71 -1.6
598,412 + BBR_RS12665 0.71 -0.9
598,421 + BBR_RS12665 0.72 -0.4
598,441 - BBR_RS12665 0.73 -2.9
598,446 + BBR_RS12665 0.74 -3.4
598,447 + BBR_RS12665 0.74 -0.5
598,457 + BBR_RS12665 0.75 +0.3
598,477 + BBR_RS12665 0.77 +1.0
598,485 - BBR_RS12665 0.78 -2.3
598,490 + BBR_RS12665 0.78 +0.0
598,491 + BBR_RS12665 0.78 -0.3
598,491 + BBR_RS12665 0.78 -1.8
598,499 - BBR_RS12665 0.79 -2.2
598,499 - BBR_RS12665 0.79 -0.6
598,499 - BBR_RS12665 0.79 -0.2
598,501 + BBR_RS12665 0.79 -0.7
598,501 + BBR_RS12665 0.79 -3.0
598,509 - BBR_RS12665 0.80 -1.3
598,516 + BBR_RS12665 0.80 +0.2

Or see this region's nucleotide sequence