Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18780

Experiment: D-Glucose (C) 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS18775 and PFLU_RS18780 are separated by 42 nucleotidesPFLU_RS18780 and PFLU_RS18785 are separated by 12 nucleotidesPFLU_RS18785 and PFLU_RS18790 are separated by 3 nucleotides PFLU_RS18775: PFLU_RS18775 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,245,171 to 4,246,415 _RS18775 PFLU_RS18780: PFLU_RS18780 - NAD(P)-binding protein, at 4,246,458 to 4,247,852 _RS18780 PFLU_RS18785: PFLU_RS18785 - ABC transporter ATP-binding protein, at 4,247,865 to 4,248,632 _RS18785 PFLU_RS18790: PFLU_RS18790 - ABC transporter substrate-binding protein, at 4,248,636 to 4,249,976 _RS18790 Position (kb) 4246 4247 4248Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4245.804 kb on + strand, within PFLU_RS18775at 4245.804 kb on + strand, within PFLU_RS18775at 4245.805 kb on - strand, within PFLU_RS18775at 4245.805 kb on - strand, within PFLU_RS18775at 4245.805 kb on - strand, within PFLU_RS18775at 4246.236 kb on + strand, within PFLU_RS18775at 4246.236 kb on + strand, within PFLU_RS18775at 4246.236 kb on + strand, within PFLU_RS18775at 4246.236 kb on + strand, within PFLU_RS18775at 4246.237 kb on - strand, within PFLU_RS18775at 4246.237 kb on - strand, within PFLU_RS18775at 4246.237 kb on - strand, within PFLU_RS18775at 4246.299 kb on + strandat 4246.299 kb on + strandat 4246.385 kb on + strandat 4246.386 kb on - strandat 4246.386 kb on - strandat 4246.503 kb on + strandat 4246.503 kb on + strandat 4246.503 kb on + strandat 4246.503 kb on + strandat 4246.504 kb on - strandat 4246.504 kb on - strandat 4246.504 kb on - strandat 4246.504 kb on - strandat 4246.504 kb on - strandat 4246.504 kb on - strandat 4246.520 kb on + strandat 4246.520 kb on + strandat 4246.521 kb on - strandat 4246.705 kb on + strand, within PFLU_RS18780at 4246.705 kb on + strand, within PFLU_RS18780at 4246.971 kb on + strand, within PFLU_RS18780at 4246.971 kb on + strand, within PFLU_RS18780at 4247.218 kb on - strand, within PFLU_RS18780at 4247.218 kb on - strand, within PFLU_RS18780at 4247.218 kb on - strand, within PFLU_RS18780at 4247.562 kb on + strand, within PFLU_RS18780at 4247.562 kb on + strand, within PFLU_RS18780at 4247.704 kb on + strand, within PFLU_RS18780at 4247.704 kb on + strand, within PFLU_RS18780at 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.823 kb on + strandat 4247.824 kb on - strandat 4247.824 kb on - strandat 4247.824 kb on - strandat 4247.824 kb on - strandat 4247.824 kb on - strandat 4247.824 kb on - strandat 4247.824 kb on - strandat 4247.824 kb on - strandat 4247.824 kb on - strandat 4247.824 kb on - strandat 4247.824 kb on - strandat 4247.866 kb on + strandat 4247.867 kb on - strandat 4247.881 kb on + strandat 4247.881 kb on + strandat 4247.882 kb on - strandat 4247.882 kb on - strandat 4247.882 kb on - strandat 4247.955 kb on + strand, within PFLU_RS18785at 4247.956 kb on - strand, within PFLU_RS18785at 4247.956 kb on - strand, within PFLU_RS18785at 4247.956 kb on - strand, within PFLU_RS18785at 4247.956 kb on - strand, within PFLU_RS18785at 4247.956 kb on - strand, within PFLU_RS18785at 4247.956 kb on - strand, within PFLU_RS18785at 4247.956 kb on - strand, within PFLU_RS18785at 4247.956 kb on - strand, within PFLU_RS18785at 4247.956 kb on - strand, within PFLU_RS18785at 4247.956 kb on - strand, within PFLU_RS18785at 4247.959 kb on + strand, within PFLU_RS18785at 4247.959 kb on + strand, within PFLU_RS18785at 4247.959 kb on + strand, within PFLU_RS18785at 4247.959 kb on + strand, within PFLU_RS18785at 4247.960 kb on - strand, within PFLU_RS18785at 4247.960 kb on - strand, within PFLU_RS18785at 4247.960 kb on - strand, within PFLU_RS18785at 4247.960 kb on - strand, within PFLU_RS18785at 4247.974 kb on + strand, within PFLU_RS18785at 4247.974 kb on + strand, within PFLU_RS18785at 4247.974 kb on + strand, within PFLU_RS18785at 4247.974 kb on + strand, within PFLU_RS18785at 4247.974 kb on + strand, within PFLU_RS18785at 4247.975 kb on - strand, within PFLU_RS18785at 4247.975 kb on - strand, within PFLU_RS18785at 4247.975 kb on - strand, within PFLU_RS18785at 4247.975 kb on - strand, within PFLU_RS18785at 4247.975 kb on - strand, within PFLU_RS18785at 4247.975 kb on - strand, within PFLU_RS18785at 4247.975 kb on - strand, within PFLU_RS18785at 4247.975 kb on - strand, within PFLU_RS18785at 4247.975 kb on - strand, within PFLU_RS18785at 4247.975 kb on - strand, within PFLU_RS18785at 4248.074 kb on + strand, within PFLU_RS18785at 4248.074 kb on + strand, within PFLU_RS18785at 4248.075 kb on - strand, within PFLU_RS18785at 4248.116 kb on + strand, within PFLU_RS18785at 4248.223 kb on + strand, within PFLU_RS18785at 4248.223 kb on + strand, within PFLU_RS18785at 4248.223 kb on + strand, within PFLU_RS18785at 4248.223 kb on + strand, within PFLU_RS18785at 4248.223 kb on + strand, within PFLU_RS18785at 4248.223 kb on + strand, within PFLU_RS18785at 4248.224 kb on - strand, within PFLU_RS18785at 4248.224 kb on - strand, within PFLU_RS18785at 4248.224 kb on - strand, within PFLU_RS18785at 4248.400 kb on + strand, within PFLU_RS18785at 4248.401 kb on - strand, within PFLU_RS18785at 4248.565 kb on + strandat 4248.565 kb on + strandat 4248.565 kb on + strandat 4248.579 kb on - strandat 4248.637 kb on + strandat 4248.656 kb on + strandat 4248.656 kb on + strandat 4248.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 3 mM
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4,245,804 + PFLU_RS18775 0.51 +0.2
4,245,804 + PFLU_RS18775 0.51 -1.7
4,245,805 - PFLU_RS18775 0.51 +4.1
4,245,805 - PFLU_RS18775 0.51 -0.8
4,245,805 - PFLU_RS18775 0.51 -1.7
4,246,236 + PFLU_RS18775 0.86 -0.2
4,246,236 + PFLU_RS18775 0.86 +0.9
4,246,236 + PFLU_RS18775 0.86 +0.6
4,246,236 + PFLU_RS18775 0.86 +1.5
4,246,237 - PFLU_RS18775 0.86 -0.4
4,246,237 - PFLU_RS18775 0.86 -0.5
4,246,237 - PFLU_RS18775 0.86 +0.5
4,246,299 + +3.1
4,246,299 + +0.9
4,246,385 + +0.8
4,246,386 - +0.3
4,246,386 - -0.5
4,246,503 + -0.2
4,246,503 + -0.2
4,246,503 + +2.0
4,246,503 + -0.4
4,246,504 - +0.9
4,246,504 - -0.1
4,246,504 - -0.2
4,246,504 - -0.6
4,246,504 - -0.7
4,246,504 - +1.2
4,246,520 + -1.1
4,246,520 + -0.1
4,246,521 - +1.8
4,246,705 + PFLU_RS18780 0.18 +0.6
4,246,705 + PFLU_RS18780 0.18 -0.1
4,246,971 + PFLU_RS18780 0.37 -1.0
4,246,971 + PFLU_RS18780 0.37 -2.3
4,247,218 - PFLU_RS18780 0.54 +0.2
4,247,218 - PFLU_RS18780 0.54 -0.3
4,247,218 - PFLU_RS18780 0.54 +0.2
4,247,562 + PFLU_RS18780 0.79 +0.1
4,247,562 + PFLU_RS18780 0.79 -1.8
4,247,704 + PFLU_RS18780 0.89 +0.2
4,247,704 + PFLU_RS18780 0.89 -0.6
4,247,823 + +1.4
4,247,823 + -1.2
4,247,823 + -2.6
4,247,823 + +1.2
4,247,823 + -2.5
4,247,823 + +0.5
4,247,823 + -1.0
4,247,823 + +0.8
4,247,823 + -1.6
4,247,823 + -0.0
4,247,823 + -0.4
4,247,823 + -1.9
4,247,823 + +0.6
4,247,824 - +0.2
4,247,824 - -0.6
4,247,824 - -0.0
4,247,824 - -0.3
4,247,824 - -0.2
4,247,824 - +0.8
4,247,824 - +1.0
4,247,824 - +0.1
4,247,824 - -0.1
4,247,824 - -1.0
4,247,824 - -0.3
4,247,866 + -0.8
4,247,867 - +0.1
4,247,881 + +1.6
4,247,881 + -1.0
4,247,882 - -0.8
4,247,882 - +0.7
4,247,882 - +1.8
4,247,955 + PFLU_RS18785 0.12 -1.1
4,247,956 - PFLU_RS18785 0.12 +1.1
4,247,956 - PFLU_RS18785 0.12 +1.0
4,247,956 - PFLU_RS18785 0.12 +0.9
4,247,956 - PFLU_RS18785 0.12 +2.3
4,247,956 - PFLU_RS18785 0.12 -0.9
4,247,956 - PFLU_RS18785 0.12 -1.0
4,247,956 - PFLU_RS18785 0.12 +0.2
4,247,956 - PFLU_RS18785 0.12 +0.3
4,247,956 - PFLU_RS18785 0.12 +0.4
4,247,956 - PFLU_RS18785 0.12 +0.0
4,247,959 + PFLU_RS18785 0.12 +0.8
4,247,959 + PFLU_RS18785 0.12 +3.4
4,247,959 + PFLU_RS18785 0.12 -1.5
4,247,959 + PFLU_RS18785 0.12 -0.6
4,247,960 - PFLU_RS18785 0.12 -0.3
4,247,960 - PFLU_RS18785 0.12 -0.2
4,247,960 - PFLU_RS18785 0.12 -1.2
4,247,960 - PFLU_RS18785 0.12 -0.2
4,247,974 + PFLU_RS18785 0.14 +0.5
4,247,974 + PFLU_RS18785 0.14 +1.8
4,247,974 + PFLU_RS18785 0.14 +1.8
4,247,974 + PFLU_RS18785 0.14 -0.6
4,247,974 + PFLU_RS18785 0.14 -0.3
4,247,975 - PFLU_RS18785 0.14 -0.5
4,247,975 - PFLU_RS18785 0.14 -0.6
4,247,975 - PFLU_RS18785 0.14 -0.4
4,247,975 - PFLU_RS18785 0.14 -0.9
4,247,975 - PFLU_RS18785 0.14 -0.7
4,247,975 - PFLU_RS18785 0.14 -0.8
4,247,975 - PFLU_RS18785 0.14 -0.2
4,247,975 - PFLU_RS18785 0.14 +0.2
4,247,975 - PFLU_RS18785 0.14 +0.9
4,247,975 - PFLU_RS18785 0.14 -1.5
4,248,074 + PFLU_RS18785 0.27 +0.9
4,248,074 + PFLU_RS18785 0.27 -1.0
4,248,075 - PFLU_RS18785 0.27 -0.5
4,248,116 + PFLU_RS18785 0.33 +0.3
4,248,223 + PFLU_RS18785 0.47 -1.3
4,248,223 + PFLU_RS18785 0.47 +0.5
4,248,223 + PFLU_RS18785 0.47 -0.8
4,248,223 + PFLU_RS18785 0.47 +1.1
4,248,223 + PFLU_RS18785 0.47 -0.3
4,248,223 + PFLU_RS18785 0.47 -0.1
4,248,224 - PFLU_RS18785 0.47 -1.4
4,248,224 - PFLU_RS18785 0.47 +0.8
4,248,224 - PFLU_RS18785 0.47 -1.2
4,248,400 + PFLU_RS18785 0.70 -1.6
4,248,401 - PFLU_RS18785 0.70 +1.3
4,248,565 + +0.5
4,248,565 + +0.9
4,248,565 + +0.2
4,248,579 - -0.2
4,248,637 + -0.9
4,248,656 + -0.9
4,248,656 + -1.4
4,248,657 - -2.1

Or see this region's nucleotide sequence