Experiment: D-Glucose (C) 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03975 and PFLU_RS03980 are separated by 61 nucleotides PFLU_RS03980 and PFLU_RS03985 overlap by 4 nucleotides PFLU_RS03985 and PFLU_RS03990 are separated by 230 nucleotides
PFLU_RS03975: PFLU_RS03975 - DUF1631 domain-containing protein, at 896,634 to 898,784
_RS03975
PFLU_RS03980: PFLU_RS03980 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 898,846 to 899,409
_RS03980
PFLU_RS03985: PFLU_RS03985 - membrane protein, at 899,406 to 900,242
_RS03985
PFLU_RS03990: PFLU_RS03990 - methyl-accepting chemotaxis protein, at 900,473 to 902,503
_RS03990
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 898.453 kb on + strand, within PFLU_RS03975 at 898.453 kb on + strand, within PFLU_RS03975 at 898.454 kb on - strand, within PFLU_RS03975 at 898.454 kb on - strand, within PFLU_RS03975 at 898.454 kb on - strand, within PFLU_RS03975 at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.619 kb on + strand at 898.619 kb on + strand at 898.619 kb on + strand at 898.619 kb on + strand at 898.619 kb on + strand at 898.619 kb on + strand at 898.620 kb on - strand at 898.620 kb on - strand at 898.620 kb on - strand at 898.620 kb on - strand at 898.625 kb on + strand at 898.704 kb on - strand at 898.704 kb on - strand at 898.704 kb on - strand at 898.704 kb on - strand at 898.747 kb on + strand at 898.811 kb on + strand at 898.811 kb on + strand at 898.812 kb on - strand at 898.812 kb on - strand at 898.812 kb on - strand at 898.846 kb on - strand at 898.846 kb on - strand at 898.846 kb on - strand at 898.846 kb on - strand at 898.950 kb on + strand, within PFLU_RS03980 at 898.950 kb on + strand, within PFLU_RS03980 at 898.950 kb on + strand, within PFLU_RS03980 at 898.950 kb on + strand, within PFLU_RS03980 at 898.950 kb on + strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 899.035 kb on + strand, within PFLU_RS03980 at 899.035 kb on + strand, within PFLU_RS03980 at 899.036 kb on - strand, within PFLU_RS03980 at 899.036 kb on - strand, within PFLU_RS03980 at 899.036 kb on - strand, within PFLU_RS03980 at 899.094 kb on + strand, within PFLU_RS03980 at 899.111 kb on + strand, within PFLU_RS03980 at 899.112 kb on - strand, within PFLU_RS03980 at 899.112 kb on - strand, within PFLU_RS03980 at 899.112 kb on - strand, within PFLU_RS03980 at 899.206 kb on - strand, within PFLU_RS03980 at 899.236 kb on + strand, within PFLU_RS03980 at 899.236 kb on + strand, within PFLU_RS03980 at 899.236 kb on + strand, within PFLU_RS03980 at 899.237 kb on - strand, within PFLU_RS03980 at 899.237 kb on - strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.290 kb on - strand, within PFLU_RS03980 at 899.290 kb on - strand, within PFLU_RS03980 at 899.434 kb on + strand at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.832 kb on + strand, within PFLU_RS03985 at 899.833 kb on - strand, within PFLU_RS03985 at 899.862 kb on + strand, within PFLU_RS03985 at 899.863 kb on - strand, within PFLU_RS03985 at 899.863 kb on - strand, within PFLU_RS03985 at 900.139 kb on + strand, within PFLU_RS03985 at 900.139 kb on + strand, within PFLU_RS03985 at 900.139 kb on + strand, within PFLU_RS03985 at 900.207 kb on + strand at 900.207 kb on + strand at 900.207 kb on + strand at 900.207 kb on + strand at 900.208 kb on - strand at 900.283 kb on - strand at 900.283 kb on - strand at 900.283 kb on - strand at 900.380 kb on + strand at 900.380 kb on + strand at 900.380 kb on + strand at 900.381 kb on - strand at 900.381 kb on - strand at 900.381 kb on - strand at 900.385 kb on + strand at 900.386 kb on - strand at 900.410 kb on + strand at 900.410 kb on + strand at 900.410 kb on + strand at 900.410 kb on + strand at 900.410 kb on + strand at 900.410 kb on + strand at 900.410 kb on + strand at 900.411 kb on - strand at 900.411 kb on - strand at 900.411 kb on - strand at 900.411 kb on - strand at 900.411 kb on - strand at 900.411 kb on - strand at 900.411 kb on - strand at 900.411 kb on - strand at 900.411 kb on - strand at 900.412 kb on + strand at 900.412 kb on + strand at 900.412 kb on + strand at 900.412 kb on + strand at 900.412 kb on + strand at 900.412 kb on + strand at 900.412 kb on + strand at 900.412 kb on + strand at 900.412 kb on + strand at 900.413 kb on - strand at 900.413 kb on - strand at 900.413 kb on - strand at 900.413 kb on - strand at 900.413 kb on - strand at 900.413 kb on - strand at 900.426 kb on - strand at 900.447 kb on + strand at 900.453 kb on + strand at 900.453 kb on + strand at 900.488 kb on + strand at 900.489 kb on - strand at 900.489 kb on - strand at 900.581 kb on + strand at 900.581 kb on + strand at 900.581 kb on + strand at 900.581 kb on + strand at 900.581 kb on + strand at 900.581 kb on + strand at 900.581 kb on + strand at 900.581 kb on + strand at 900.581 kb on + strand at 900.581 kb on + strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.582 kb on - strand at 900.584 kb on + strand at 900.584 kb on + strand at 900.584 kb on + strand at 900.584 kb on + strand at 900.585 kb on - strand at 900.585 kb on - strand at 900.585 kb on - strand at 900.585 kb on - strand at 900.585 kb on - strand at 900.585 kb on - strand at 900.585 kb on - strand at 900.702 kb on + strand, within PFLU_RS03990 at 900.702 kb on + strand, within PFLU_RS03990 at 900.702 kb on + strand, within PFLU_RS03990 at 900.703 kb on - strand, within PFLU_RS03990 at 900.703 kb on - strand, within PFLU_RS03990 at 900.703 kb on - strand, within PFLU_RS03990 at 900.703 kb on - strand, within PFLU_RS03990 at 900.703 kb on - strand, within PFLU_RS03990 at 900.703 kb on - strand, within PFLU_RS03990 at 900.703 kb on - strand, within PFLU_RS03990 at 900.703 kb on - strand, within PFLU_RS03990 at 901.085 kb on + strand, within PFLU_RS03990 at 901.085 kb on + strand, within PFLU_RS03990 at 901.085 kb on + strand, within PFLU_RS03990 at 901.085 kb on + strand, within PFLU_RS03990 at 901.085 kb on + strand, within PFLU_RS03990 at 901.085 kb on + strand, within PFLU_RS03990 at 901.086 kb on - strand, within PFLU_RS03990 at 901.086 kb on - strand, within PFLU_RS03990 at 901.123 kb on + strand, within PFLU_RS03990 at 901.124 kb on - strand, within PFLU_RS03990 at 901.173 kb on - strand, within PFLU_RS03990 at 901.173 kb on - strand, within PFLU_RS03990 at 901.227 kb on + strand, within PFLU_RS03990 at 901.228 kb on - strand, within PFLU_RS03990
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 3 mM remove 898,453 + PFLU_RS03975 0.85 +0.1 898,453 + PFLU_RS03975 0.85 -1.3 898,454 - PFLU_RS03975 0.85 -0.0 898,454 - PFLU_RS03975 0.85 +2.2 898,454 - PFLU_RS03975 0.85 -0.8 898,613 + +0.3 898,613 + +1.8 898,613 + -2.0 898,613 + +0.5 898,613 + +0.8 898,613 + +0.1 898,613 + +0.2 898,613 + -0.6 898,613 + +1.8 898,614 - +1.0 898,614 - +0.3 898,614 - -0.6 898,614 - +1.3 898,614 - +0.1 898,614 - +0.2 898,614 - +0.8 898,614 - +0.5 898,614 - +0.2 898,614 - -0.2 898,614 - -0.4 898,614 - +0.6 898,614 - +0.5 898,614 - +0.0 898,614 - -0.3 898,617 + +0.1 898,617 + -2.3 898,617 + -0.5 898,617 + +0.4 898,617 + -0.3 898,617 + -0.7 898,617 + +0.6 898,617 + -0.3 898,617 + -0.3 898,617 + -2.1 898,617 + -0.2 898,617 + -0.5 898,618 - -1.2 898,618 - -3.2 898,618 - +0.3 898,618 - -1.7 898,618 - -0.7 898,618 - -1.1 898,618 - +0.1 898,618 - -1.6 898,618 - -0.1 898,618 - -0.5 898,618 - +0.1 898,618 - -0.5 898,619 + -0.0 898,619 + +1.8 898,619 + -1.7 898,619 + +0.2 898,619 + -1.9 898,619 + +0.9 898,620 - -0.1 898,620 - -0.2 898,620 - +0.4 898,620 - +1.2 898,625 + +1.8 898,704 - +1.1 898,704 - +0.6 898,704 - +0.3 898,704 - -2.5 898,747 + +0.8 898,811 + +0.8 898,811 + -0.0 898,812 - +0.5 898,812 - -0.6 898,812 - -0.1 898,846 - +1.8 898,846 - -0.1 898,846 - -1.4 898,846 - +0.8 898,950 + PFLU_RS03980 0.18 -0.4 898,950 + PFLU_RS03980 0.18 +0.6 898,950 + PFLU_RS03980 0.18 +0.5 898,950 + PFLU_RS03980 0.18 +0.4 898,950 + PFLU_RS03980 0.18 +2.8 898,951 - PFLU_RS03980 0.19 +0.8 898,951 - PFLU_RS03980 0.19 +0.6 898,951 - PFLU_RS03980 0.19 +0.0 898,951 - PFLU_RS03980 0.19 -0.1 898,951 - PFLU_RS03980 0.19 +1.4 898,951 - PFLU_RS03980 0.19 +0.3 898,951 - PFLU_RS03980 0.19 +1.6 898,951 - PFLU_RS03980 0.19 +4.1 898,951 - PFLU_RS03980 0.19 +0.3 898,951 - PFLU_RS03980 0.19 +0.2 898,951 - PFLU_RS03980 0.19 +1.2 899,035 + PFLU_RS03980 0.34 +2.9 899,035 + PFLU_RS03980 0.34 +1.3 899,036 - PFLU_RS03980 0.34 +1.8 899,036 - PFLU_RS03980 0.34 -0.4 899,036 - PFLU_RS03980 0.34 +0.3 899,094 + PFLU_RS03980 0.44 -0.2 899,111 + PFLU_RS03980 0.47 -0.2 899,112 - PFLU_RS03980 0.47 +2.3 899,112 - PFLU_RS03980 0.47 +0.5 899,112 - PFLU_RS03980 0.47 +0.8 899,206 - PFLU_RS03980 0.64 +0.8 899,236 + PFLU_RS03980 0.69 -0.3 899,236 + PFLU_RS03980 0.69 -0.7 899,236 + PFLU_RS03980 0.69 +2.0 899,237 - PFLU_RS03980 0.69 +1.0 899,237 - PFLU_RS03980 0.69 +0.8 899,289 + PFLU_RS03980 0.79 +0.8 899,289 + PFLU_RS03980 0.79 +0.1 899,289 + PFLU_RS03980 0.79 +1.8 899,289 + PFLU_RS03980 0.79 -0.8 899,289 + PFLU_RS03980 0.79 +0.5 899,289 + PFLU_RS03980 0.79 -1.0 899,289 + PFLU_RS03980 0.79 +0.6 899,290 - PFLU_RS03980 0.79 +0.6 899,290 - PFLU_RS03980 0.79 +1.5 899,434 + +0.5 899,661 + PFLU_RS03985 0.30 +0.4 899,661 + PFLU_RS03985 0.30 +1.6 899,661 + PFLU_RS03985 0.30 +0.2 899,661 + PFLU_RS03985 0.30 -0.4 899,661 + PFLU_RS03985 0.30 +4.7 899,661 + PFLU_RS03985 0.30 -2.5 899,661 + PFLU_RS03985 0.30 -0.7 899,662 - PFLU_RS03985 0.31 -0.8 899,662 - PFLU_RS03985 0.31 +0.9 899,662 - PFLU_RS03985 0.31 +1.4 899,662 - PFLU_RS03985 0.31 +1.8 899,662 - PFLU_RS03985 0.31 -0.5 899,662 - PFLU_RS03985 0.31 +0.0 899,662 - PFLU_RS03985 0.31 +0.2 899,832 + PFLU_RS03985 0.51 -1.1 899,833 - PFLU_RS03985 0.51 -0.1 899,862 + PFLU_RS03985 0.54 +1.3 899,863 - PFLU_RS03985 0.55 -0.2 899,863 - PFLU_RS03985 0.55 -1.0 900,139 + PFLU_RS03985 0.88 +0.1 900,139 + PFLU_RS03985 0.88 +0.3 900,139 + PFLU_RS03985 0.88 -1.0 900,207 + -0.0 900,207 + -0.2 900,207 + -0.4 900,207 + -0.3 900,208 - -1.9 900,283 - +0.1 900,283 - -1.1 900,283 - +1.5 900,380 + +0.1 900,380 + +0.8 900,380 + +0.1 900,381 - -0.5 900,381 - -0.1 900,381 - +0.7 900,385 + +0.8 900,386 - +0.8 900,410 + +0.3 900,410 + -0.3 900,410 + -1.0 900,410 + -2.5 900,410 + +1.0 900,410 + +0.2 900,410 + +0.0 900,411 - -1.0 900,411 - -0.0 900,411 - -0.5 900,411 - -1.2 900,411 - +0.5 900,411 - -0.3 900,411 - +0.7 900,411 - +1.1 900,411 - -1.0 900,412 + -0.2 900,412 + +0.6 900,412 + +0.0 900,412 + -1.4 900,412 + +0.6 900,412 + -0.7 900,412 + -0.5 900,412 + -1.0 900,412 + -0.2 900,413 - +1.0 900,413 - -0.5 900,413 - -0.0 900,413 - +0.1 900,413 - +1.3 900,413 - -0.7 900,426 - -0.0 900,447 + +1.0 900,453 + -0.7 900,453 + -0.4 900,488 + +0.2 900,489 - +0.6 900,489 - +2.4 900,581 + +0.2 900,581 + -0.6 900,581 + +0.3 900,581 + -0.2 900,581 + -0.5 900,581 + -0.1 900,581 + -0.0 900,581 + +2.4 900,581 + +0.2 900,581 + +0.6 900,582 - +0.3 900,582 - -0.8 900,582 - +0.3 900,582 - -0.8 900,582 - +0.9 900,582 - -1.1 900,582 - +0.9 900,582 - -0.7 900,582 - -2.3 900,582 - -1.8 900,582 - +0.1 900,582 - +1.4 900,582 - +0.2 900,584 + -0.4 900,584 + +0.0 900,584 + +0.2 900,584 + +0.9 900,585 - -0.5 900,585 - -0.1 900,585 - +0.5 900,585 - +1.2 900,585 - -2.1 900,585 - +0.6 900,585 - +0.8 900,702 + PFLU_RS03990 0.11 -0.0 900,702 + PFLU_RS03990 0.11 -1.9 900,702 + PFLU_RS03990 0.11 +0.2 900,703 - PFLU_RS03990 0.11 +0.0 900,703 - PFLU_RS03990 0.11 -0.7 900,703 - PFLU_RS03990 0.11 -1.2 900,703 - PFLU_RS03990 0.11 +0.9 900,703 - PFLU_RS03990 0.11 -0.9 900,703 - PFLU_RS03990 0.11 +1.8 900,703 - PFLU_RS03990 0.11 +1.2 900,703 - PFLU_RS03990 0.11 -1.2 901,085 + PFLU_RS03990 0.30 -1.4 901,085 + PFLU_RS03990 0.30 -1.0 901,085 + PFLU_RS03990 0.30 +0.2 901,085 + PFLU_RS03990 0.30 +0.1 901,085 + PFLU_RS03990 0.30 -0.6 901,085 + PFLU_RS03990 0.30 -0.8 901,086 - PFLU_RS03990 0.30 -1.4 901,086 - PFLU_RS03990 0.30 +0.5 901,123 + PFLU_RS03990 0.32 -0.9 901,124 - PFLU_RS03990 0.32 +0.1 901,173 - PFLU_RS03990 0.34 -0.4 901,173 - PFLU_RS03990 0.34 -1.2 901,227 + PFLU_RS03990 0.37 -0.6 901,228 - PFLU_RS03990 0.37 +2.8
Or see this region's nucleotide sequence