Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08535

Experiment: 4-Hydroxyphenylpropionic (C) 1.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 1.5 mM
1,900,621	+				+0.6
1,900,645	+				+0.9
1,900,645	+				+1.3
1,900,645	+				-0.0
1,900,646	-				-1.7
1,900,646	-				-0.7
1,900,646	-				-1.1
1,900,646	-				+1.5
1,900,646	-				+0.2
1,900,648	+				+0.1
1,900,648	+				+1.0
1,900,648	+				+0.6
1,900,648	+				+0.2
1,900,648	+				+1.0
1,900,648	+				-0.0
1,900,648	+				+0.3
1,900,649	-				+0.3
1,900,649	-				+0.4
1,900,649	-				-0.5
1,900,649	-				+1.4
1,900,649	-				-1.1
1,900,649	-				-0.0
1,900,654	+				+0.8
1,900,655	-				-0.6
1,900,655	-				+0.5
1,900,812	+		PFLU_RS08525	0.26	-0.8
1,900,812	+		PFLU_RS08525	0.26	-0.2
1,900,812	+		PFLU_RS08525	0.26	+0.1
1,900,813	-		PFLU_RS08525	0.26	+0.6
1,900,813	-		PFLU_RS08525	0.26	+0.3
1,900,813	-		PFLU_RS08525	0.26	-0.7
1,900,842	+		PFLU_RS08525	0.32	-0.0
1,900,842	+		PFLU_RS08525	0.32	+0.1
1,900,842	+		PFLU_RS08525	0.32	-1.1
1,900,842	+		PFLU_RS08525	0.32	+0.4
1,900,842	+		PFLU_RS08525	0.32	-0.6
1,900,842	+		PFLU_RS08525	0.32	+0.3
1,900,842	+		PFLU_RS08525	0.32	-0.5
1,900,842	+		PFLU_RS08525	0.32	+1.1
1,900,843	-		PFLU_RS08525	0.32	-1.4
1,900,843	-		PFLU_RS08525	0.32	-0.7
1,900,843	-		PFLU_RS08525	0.32	-0.1
1,900,843	-		PFLU_RS08525	0.32	+0.8
1,900,843	-		PFLU_RS08525	0.32	-0.6
1,901,213	+				+0.1
1,901,214	-				-0.5
1,901,243	+		PFLU_RS08530	0.16	-0.4
1,901,243	+		PFLU_RS08530	0.16	-0.1
1,901,243	+		PFLU_RS08530	0.16	+0.7
1,901,243	+		PFLU_RS08530	0.16	-0.9
1,901,243	+		PFLU_RS08530	0.16	+0.4
1,901,243	+		PFLU_RS08530	0.16	-0.9
1,901,244	-		PFLU_RS08530	0.16	-0.8
1,901,244	-		PFLU_RS08530	0.16	+0.5
1,901,244	-		PFLU_RS08530	0.16	+1.3
1,901,244	-		PFLU_RS08530	0.16	+1.2
1,901,245	+		PFLU_RS08530	0.16	+1.6
1,901,245	+		PFLU_RS08530	0.16	-1.1
1,901,245	+		PFLU_RS08530	0.16	+0.5
1,901,246	-		PFLU_RS08530	0.16	+0.1
1,901,246	-		PFLU_RS08530	0.16	+0.4
1,901,246	-		PFLU_RS08530	0.16	-0.6
1,901,246	-		PFLU_RS08530	0.16	+1.9
1,901,246	-		PFLU_RS08530	0.16	-0.6
1,901,276	+		PFLU_RS08530	0.23	-0.5
1,901,277	-		PFLU_RS08530	0.23	-0.7
1,901,277	-		PFLU_RS08530	0.23	+0.3
1,901,277	-		PFLU_RS08530	0.23	-0.3
1,901,285	+		PFLU_RS08530	0.24	-0.1
1,901,285	+		PFLU_RS08530	0.24	+1.1
1,901,285	+		PFLU_RS08530	0.24	+0.3
1,901,285	+		PFLU_RS08530	0.24	+0.3
1,901,286	-		PFLU_RS08530	0.25	+1.4
1,901,677	+				+0.9
1,901,677	+				-1.7
1,901,677	+				-0.8
1,901,678	-				+0.5
1,901,678	-				-0.6
1,901,678	-				-1.6
1,901,816	+				-1.8
1,901,816	+				-2.9
1,901,816	+				-2.5
1,901,816	+				-0.5
1,901,816	+				-2.0
1,901,817	-				+1.9
1,901,817	-				-0.1
1,901,817	-				-0.6
1,901,817	-				-1.5
1,901,817	-				-1.8
1,901,817	-				-1.6
1,901,817	-				-0.8
1,901,817	-				-1.8
1,901,817	-				+0.1
1,901,817	-				-0.0
1,901,817	-				-0.7
1,902,044	+		PFLU_RS08535	0.19	-0.9
1,902,044	+		PFLU_RS08535	0.19	-1.5
1,902,044	+		PFLU_RS08535	0.19	+0.1
1,902,044	+		PFLU_RS08535	0.19	-0.9
1,902,044	+		PFLU_RS08535	0.19	-2.7
1,902,044	+		PFLU_RS08535	0.19	-1.9
1,902,045	-		PFLU_RS08535	0.19	+0.3
1,902,061	+		PFLU_RS08535	0.20	-0.9
1,902,062	-		PFLU_RS08535	0.20	-0.9
1,902,145	+		PFLU_RS08535	0.24	+0.7
1,902,556	-		PFLU_RS08535	0.41	-0.7
1,902,556	-		PFLU_RS08535	0.41	+0.1
1,902,639	+		PFLU_RS08535	0.45	-1.4
1,902,639	+		PFLU_RS08535	0.45	-1.8
1,902,639	+		PFLU_RS08535	0.45	-1.2
1,902,639	+		PFLU_RS08535	0.45	-0.0
1,902,639	+		PFLU_RS08535	0.45	-1.5
1,902,639	+		PFLU_RS08535	0.45	-2.3
1,902,639	+		PFLU_RS08535	0.45	-1.4
1,902,639	+		PFLU_RS08535	0.45	+0.1
1,902,639	+		PFLU_RS08535	0.45	-1.0
1,902,639	+		PFLU_RS08535	0.45	-1.9
1,902,639	+		PFLU_RS08535	0.45	-0.1
1,902,639	+		PFLU_RS08535	0.45	-1.8
1,902,640	-		PFLU_RS08535	0.45	-0.6
1,902,640	-		PFLU_RS08535	0.45	-0.5
1,902,640	-		PFLU_RS08535	0.45	-0.9
1,902,640	-		PFLU_RS08535	0.45	-0.5
1,902,640	-		PFLU_RS08535	0.45	-0.1
1,902,640	-		PFLU_RS08535	0.45	-0.1
1,902,640	-		PFLU_RS08535	0.45	+0.1
1,902,640	-		PFLU_RS08535	0.45	-1.3
1,902,640	-		PFLU_RS08535	0.45	-2.7
1,902,640	-		PFLU_RS08535	0.45	-1.1
1,902,640	-		PFLU_RS08535	0.45	-1.2
1,902,689	+		PFLU_RS08535	0.47	-0.5
1,902,689	+		PFLU_RS08535	0.47	-1.7
1,902,690	-		PFLU_RS08535	0.47	-0.9
1,903,181	-		PFLU_RS08535	0.68	-1.0
1,903,181	-		PFLU_RS08535	0.68	-1.1
1,903,372	+		PFLU_RS08535	0.77	-2.7
1,903,372	+		PFLU_RS08535	0.77	-0.7
1,903,372	+		PFLU_RS08535	0.77	-2.3
1,903,372	+		PFLU_RS08535	0.77	-0.1
1,903,372	+		PFLU_RS08535	0.77	-0.6
1,903,372	+		PFLU_RS08535	0.77	-2.0
1,903,372	+		PFLU_RS08535	0.77	-2.7
1,903,373	-		PFLU_RS08535	0.77	-3.3
1,903,373	-		PFLU_RS08535	0.77	-0.6
1,903,373	-		PFLU_RS08535	0.77	+1.9
1,903,373	-		PFLU_RS08535	0.77	-1.0
1,903,373	-		PFLU_RS08535	0.77	-0.4
1,903,373	-		PFLU_RS08535	0.77	-2.5
1,903,373	-		PFLU_RS08535	0.77	+1.9
1,903,471	+		PFLU_RS08535	0.81	+1.9
1,903,471	+		PFLU_RS08535	0.81	-0.1
1,903,471	+		PFLU_RS08535	0.81	-0.5
1,903,471	+		PFLU_RS08535	0.81	-0.1
1,903,471	+		PFLU_RS08535	0.81	-0.1
1,903,471	+		PFLU_RS08535	0.81	+0.6
1,903,471	+		PFLU_RS08535	0.81	-0.4
1,903,471	+		PFLU_RS08535	0.81	-2.8
1,903,471	+		PFLU_RS08535	0.81	-1.9
1,903,471	+		PFLU_RS08535	0.81	-1.5
1,903,471	+		PFLU_RS08535	0.81	-2.7
1,903,471	+		PFLU_RS08535	0.81	-1.5
1,903,471	+		PFLU_RS08535	0.81	-1.9
1,903,471	+		PFLU_RS08535	0.81	-0.1
1,903,471	+		PFLU_RS08535	0.81	+0.5
1,903,471	+		PFLU_RS08535	0.81	+0.3
1,903,471	+		PFLU_RS08535	0.81	-1.4
1,903,471	+		PFLU_RS08535	0.81	-0.3
1,903,472	-		PFLU_RS08535	0.81	+0.1
1,903,472	-		PFLU_RS08535	0.81	-2.5
1,903,472	-		PFLU_RS08535	0.81	-1.8
1,903,472	-		PFLU_RS08535	0.81	-2.5
1,903,472	-		PFLU_RS08535	0.81	-1.1
1,903,472	-		PFLU_RS08535	0.81	-1.3
1,903,472	-		PFLU_RS08535	0.81	-1.9
1,903,472	-		PFLU_RS08535	0.81	-3.3
1,903,472	-		PFLU_RS08535	0.81	-1.7
1,903,494	+		PFLU_RS08535	0.82	-0.8
1,903,494	+		PFLU_RS08535	0.82	+0.1
1,903,494	+		PFLU_RS08535	0.82	-1.1
1,903,517	+		PFLU_RS08535	0.83	+0.9
1,903,517	+		PFLU_RS08535	0.83	-1.7
1,903,517	+		PFLU_RS08535	0.83	-1.0
1,903,517	+		PFLU_RS08535	0.83	+0.1
1,903,517	+		PFLU_RS08535	0.83	-2.5
1,903,517	+		PFLU_RS08535	0.83	-1.3
1,903,517	+		PFLU_RS08535	0.83	-1.5
1,903,517	+		PFLU_RS08535	0.83	+0.1
1,903,517	+		PFLU_RS08535	0.83	-1.9
1,903,517	+		PFLU_RS08535	0.83	-2.0
1,903,517	+		PFLU_RS08535	0.83	+0.9
1,903,517	+		PFLU_RS08535	0.83	+0.1
1,903,518	-		PFLU_RS08535	0.83	-0.7
1,903,518	-		PFLU_RS08535	0.83	-1.1
1,903,518	-		PFLU_RS08535	0.83	-0.1
1,903,518	-		PFLU_RS08535	0.83	-2.8
1,903,585	+		PFLU_RS08535	0.86	-1.8
1,903,586	-		PFLU_RS08535	0.86	-0.9
1,903,624	-		PFLU_RS08535	0.88	-2.2
1,903,624	-		PFLU_RS08535	0.88	+1.4
1,903,720	+				-1.4
1,903,720	+				-2.0
1,903,720	+				+0.4
1,903,720	+				-1.1
1,903,721	-				-2.5
1,903,801	+				-0.5
1,903,801	+				-1.0
1,903,801	+				-2.0
1,903,801	+				+1.5
1,903,801	+				-1.8
1,903,801	+				-1.5
1,903,802	-				-1.9
1,903,802	-				-1.3
1,903,802	-				-1.7
1,903,877	+				-0.1
1,903,877	+				-0.1
1,903,877	+				+0.4
1,903,877	+				+0.3
1,903,877	+				+0.9
1,903,877	+				-0.1
1,903,878	-				-1.1
1,903,878	-				-0.3
1,903,878	-				-0.3
1,903,878	-				-0.9
1,903,878	-				+1.3
1,903,878	-				-0.5
1,903,878	-				-0.5
1,903,878	-				-2.7
1,903,878	-				-1.1
1,903,879	+				-0.1
1,903,879	+				+0.3
1,903,879	+				-1.6
1,903,879	+				-2.3
1,903,879	+				-2.0
1,903,880	-				+1.9
1,903,880	-				-2.3
1,903,880	-				-1.1
1,903,880	-				-1.1
1,903,953	+				-0.8
1,903,953	+				+0.9
1,903,953	+				+0.0
1,903,953	+				+0.2
1,903,953	+				-0.1
1,903,953	+				+0.1
1,903,953	+				-0.5
1,903,953	+				-0.4
1,903,953	+				+1.4
1,903,953	+				+0.0
1,903,953	+				-0.6
1,903,953	+				-0.5
1,903,953	+				-0.8
1,903,953	+				+0.4
1,903,953	+				+0.1
1,903,953	+				-0.5
1,903,953	+				-2.5
1,903,953	+				-0.3
1,903,953	+				+1.1
1,903,953	+				-0.3
1,903,953	+				-0.4
1,903,953	+				-1.3
1,903,954	-				+0.9
1,903,954	-				+1.2
1,903,954	-				-0.1
1,903,954	-				+0.9
1,903,954	-				+1.1
1,903,954	-				+0.7
1,903,954	-				+0.3
1,903,954	-				+1.1
1,903,954	-				+3.2
1,903,954	-				+0.0
1,903,954	-				+1.4
1,903,954	-				+0.9
1,903,954	-				-0.1
1,903,954	-				+1.1
1,903,954	-				+0.3
1,903,954	-				+0.4
1,903,954	-				+1.3
1,903,954	-				+0.8
1,903,954	-				+0.2
1,903,954	-				+0.1
1,903,954	-				+1.1
1,903,954	-				+0.3
1,903,954	-				+1.1
1,903,954	-				+0.9
1,904,037	+				+1.7
1,904,038	-				+0.6
1,904,038	-				+1.5
1,904,070	+				+0.1
1,904,070	+				+0.7
1,904,070	+				+1.1
1,904,118	+				+0.1
1,904,118	+				+1.3
1,904,118	+				+2.7
1,904,118	+				-0.3
1,904,118	+				+1.6
1,904,119	-				+1.1
1,904,119	-				+1.7
1,904,119	-				+0.4
1,904,119	-				-0.4
1,904,487	+		PFLU_RS08540	0.46	-0.9
1,904,488	-		PFLU_RS08540	0.46	+0.2
1,904,500	+		PFLU_RS08540	0.48	-1.8
1,904,500	+		PFLU_RS08540	0.48	-0.7
1,904,546	+		PFLU_RS08540	0.53	+2.9
1,904,557	+		PFLU_RS08540	0.54	+0.3
1,904,557	+		PFLU_RS08540	0.54	+0.2
1,904,557	+		PFLU_RS08540	0.54	-0.6
1,904,557	+		PFLU_RS08540	0.54	+0.8
1,904,558	-		PFLU_RS08540	0.54	+1.6
1,904,558	-		PFLU_RS08540	0.54	+0.2
1,904,558	-		PFLU_RS08540	0.54	+0.9
1,904,558	-		PFLU_RS08540	0.54	+1.9
1,904,601	+		PFLU_RS08540	0.59	+0.5
1,904,601	+		PFLU_RS08540	0.59	+0.7
1,904,601	+		PFLU_RS08540	0.59	+0.7
1,904,601	+		PFLU_RS08540	0.59	+0.2
1,904,601	+		PFLU_RS08540	0.59	+0.5
1,904,601	+		PFLU_RS08540	0.59	+1.5
1,904,601	+		PFLU_RS08540	0.59	+1.3
1,904,602	-		PFLU_RS08540	0.59	+1.4
1,904,602	-		PFLU_RS08540	0.59	+2.3
1,904,602	-		PFLU_RS08540	0.59	-0.8
1,904,602	-		PFLU_RS08540	0.59	-0.0
1,904,602	-		PFLU_RS08540	0.59	+1.1
1,904,602	-		PFLU_RS08540	0.59	+0.5
1,904,602	-		PFLU_RS08540	0.59	+0.2
1,904,602	-		PFLU_RS08540	0.59	-0.4
1,904,602	-		PFLU_RS08540	0.59	-0.6
1,904,602	-		PFLU_RS08540	0.59	+0.8
1,904,602	-		PFLU_RS08540	0.59	+0.1
1,904,602	-		PFLU_RS08540	0.59	+0.1
1,904,602	-		PFLU_RS08540	0.59	+0.6
1,904,609	+		PFLU_RS08540	0.60	+0.9
1,904,609	+		PFLU_RS08540	0.60	+0.9
1,904,609	+		PFLU_RS08540	0.60	-0.1
1,904,609	+		PFLU_RS08540	0.60	-0.6
1,904,610	-		PFLU_RS08540	0.60	+1.3
1,904,610	-		PFLU_RS08540	0.60	-0.0
1,904,610	-		PFLU_RS08540	0.60	+1.7
1,904,610	-		PFLU_RS08540	0.60	+0.5
1,904,756	+		PFLU_RS08540	0.76	-0.3
1,904,756	+		PFLU_RS08540	0.76	-0.8
1,904,757	-		PFLU_RS08540	0.77	-2.5
1,904,757	-		PFLU_RS08540	0.77	+0.3
1,904,757	-		PFLU_RS08540	0.77	+0.2
1,904,757	-		PFLU_RS08540	0.77	-0.2