Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3989 and Psest_3990 are separated by 196 nucleotides Psest_3990 and Psest_3991 overlap by 4 nucleotides Psest_3991 and Psest_3992 are separated by 101 nucleotides Psest_3992 and Psest_3993 overlap by 4 nucleotides
Psest_3989: Psest_3989 - Disulfide bond chaperones of the HSP33 family, at 4,159,080 to 4,159,967
_3989
Psest_3990: Psest_3990 - PAP2 superfamily., at 4,160,164 to 4,160,955
_3990
Psest_3991: Psest_3991 - Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog), at 4,160,952 to 4,161,350
_3991
Psest_3992: Psest_3992 - Uncharacterized protein conserved in archaea, at 4,161,452 to 4,161,919
_3992
Psest_3993: Psest_3993 - alpha-L-glutamate ligases, RimK family, at 4,161,916 to 4,162,821
_3993
Position (kb) 4160
4161
4162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4160.124 kb on + strand at 4160.125 kb on - strand at 4160.125 kb on - strand at 4160.159 kb on + strand at 4160.160 kb on - strand at 4160.160 kb on - strand at 4160.160 kb on - strand at 4160.222 kb on + strand at 4160.222 kb on + strand at 4160.222 kb on + strand at 4160.222 kb on + strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.364 kb on + strand, within Psest_3990 at 4160.364 kb on + strand, within Psest_3990 at 4160.364 kb on + strand, within Psest_3990 at 4160.364 kb on + strand, within Psest_3990 at 4160.486 kb on + strand, within Psest_3990 at 4160.486 kb on + strand, within Psest_3990 at 4160.487 kb on - strand, within Psest_3990 at 4160.575 kb on + strand, within Psest_3990 at 4160.726 kb on + strand, within Psest_3990 at 4160.727 kb on - strand, within Psest_3990 at 4160.727 kb on - strand, within Psest_3990 at 4160.729 kb on + strand, within Psest_3990 at 4160.729 kb on + strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.840 kb on - strand, within Psest_3990 at 4160.918 kb on + strand at 4160.918 kb on + strand at 4160.918 kb on + strand at 4160.953 kb on + strand at 4161.097 kb on + strand, within Psest_3991 at 4161.097 kb on + strand, within Psest_3991 at 4161.097 kb on + strand, within Psest_3991 at 4161.098 kb on - strand, within Psest_3991 at 4161.361 kb on + strand at 4161.361 kb on + strand at 4161.361 kb on + strand at 4161.362 kb on - strand at 4161.362 kb on - strand at 4161.362 kb on - strand at 4161.368 kb on + strand at 4161.368 kb on + strand at 4161.368 kb on + strand at 4161.368 kb on + strand at 4161.369 kb on - strand at 4161.369 kb on - strand at 4161.380 kb on + strand at 4161.381 kb on - strand at 4161.381 kb on - strand at 4161.381 kb on - strand at 4161.388 kb on + strand at 4161.389 kb on - strand at 4161.389 kb on - strand at 4161.389 kb on - strand at 4161.389 kb on - strand at 4161.389 kb on - strand at 4161.389 kb on - strand at 4161.420 kb on + strand at 4161.421 kb on - strand at 4161.421 kb on - strand at 4161.421 kb on - strand at 4161.421 kb on - strand at 4161.556 kb on + strand, within Psest_3992 at 4161.556 kb on + strand, within Psest_3992 at 4161.725 kb on + strand, within Psest_3992 at 4161.726 kb on - strand, within Psest_3992 at 4161.726 kb on - strand, within Psest_3992 at 4161.726 kb on - strand, within Psest_3992 at 4161.726 kb on - strand, within Psest_3992 at 4161.726 kb on - strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.874 kb on + strand at 4161.952 kb on + strand at 4161.952 kb on + strand at 4161.953 kb on - strand at 4161.953 kb on - strand at 4162.027 kb on + strand, within Psest_3993 at 4162.027 kb on + strand, within Psest_3993 at 4162.027 kb on + strand, within Psest_3993 at 4162.027 kb on + strand, within Psest_3993 at 4162.028 kb on - strand, within Psest_3993 at 4162.028 kb on - strand, within Psest_3993 at 4162.028 kb on - strand, within Psest_3993 at 4162.028 kb on - strand, within Psest_3993 at 4162.129 kb on + strand, within Psest_3993 at 4162.129 kb on + strand, within Psest_3993 at 4162.129 kb on + strand, within Psest_3993 at 4162.129 kb on + strand, within Psest_3993 at 4162.129 kb on + strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,160,124 + +0.3 4,160,125 - -0.4 4,160,125 - -0.7 4,160,159 + +0.4 4,160,160 - -0.2 4,160,160 - +0.6 4,160,160 - +0.1 4,160,222 + -0.8 4,160,222 + +0.4 4,160,222 + +0.4 4,160,222 + +0.2 4,160,223 - +1.3 4,160,223 - -0.2 4,160,223 - +0.8 4,160,223 - +0.3 4,160,223 - +0.1 4,160,223 - -0.1 4,160,223 - +1.0 4,160,223 - +0.3 4,160,364 + Psest_3990 0.25 +0.7 4,160,364 + Psest_3990 0.25 +0.6 4,160,364 + Psest_3990 0.25 -0.4 4,160,364 + Psest_3990 0.25 +1.4 4,160,486 + Psest_3990 0.41 -1.3 4,160,486 + Psest_3990 0.41 -0.0 4,160,487 - Psest_3990 0.41 +0.5 4,160,575 + Psest_3990 0.52 +0.2 4,160,726 + Psest_3990 0.71 +0.8 4,160,727 - Psest_3990 0.71 +0.3 4,160,727 - Psest_3990 0.71 +0.1 4,160,729 + Psest_3990 0.71 +0.6 4,160,729 + Psest_3990 0.71 +0.2 4,160,730 - Psest_3990 0.71 -0.2 4,160,730 - Psest_3990 0.71 -0.0 4,160,730 - Psest_3990 0.71 +0.5 4,160,730 - Psest_3990 0.71 -0.4 4,160,730 - Psest_3990 0.71 +0.2 4,160,730 - Psest_3990 0.71 -0.2 4,160,730 - Psest_3990 0.71 -1.3 4,160,840 - Psest_3990 0.85 -0.1 4,160,918 + -1.6 4,160,918 + -1.1 4,160,918 + +0.7 4,160,953 + -0.1 4,161,097 + Psest_3991 0.36 -1.4 4,161,097 + Psest_3991 0.36 -0.6 4,161,097 + Psest_3991 0.36 -1.5 4,161,098 - Psest_3991 0.37 -1.8 4,161,361 + +1.4 4,161,361 + -0.6 4,161,361 + -2.4 4,161,362 - +1.0 4,161,362 - +1.8 4,161,362 - -0.4 4,161,368 + -2.4 4,161,368 + -1.2 4,161,368 + +0.0 4,161,368 + +0.5 4,161,369 - -0.8 4,161,369 - -0.9 4,161,380 + +0.2 4,161,381 - -0.2 4,161,381 - +0.4 4,161,381 - +0.0 4,161,388 + -0.2 4,161,389 - +1.5 4,161,389 - -0.2 4,161,389 - -1.5 4,161,389 - +0.2 4,161,389 - +0.6 4,161,389 - -0.0 4,161,420 + -1.5 4,161,421 - +0.8 4,161,421 - +1.6 4,161,421 - +0.4 4,161,421 - +1.1 4,161,556 + Psest_3992 0.22 +0.4 4,161,556 + Psest_3992 0.22 +0.6 4,161,725 + Psest_3992 0.58 -0.1 4,161,726 - Psest_3992 0.59 -0.2 4,161,726 - Psest_3992 0.59 -0.9 4,161,726 - Psest_3992 0.59 -2.1 4,161,726 - Psest_3992 0.59 +0.1 4,161,726 - Psest_3992 0.59 +0.8 4,161,872 + Psest_3992 0.90 +0.3 4,161,872 + Psest_3992 0.90 -0.9 4,161,872 + Psest_3992 0.90 -0.0 4,161,872 + Psest_3992 0.90 +1.4 4,161,872 + Psest_3992 0.90 +1.6 4,161,872 + Psest_3992 0.90 +0.2 4,161,872 + Psest_3992 0.90 +0.2 4,161,872 + Psest_3992 0.90 +0.3 4,161,872 + Psest_3992 0.90 -0.1 4,161,872 + Psest_3992 0.90 +0.7 4,161,872 + Psest_3992 0.90 +0.9 4,161,872 + Psest_3992 0.90 -0.7 4,161,872 + Psest_3992 0.90 +1.9 4,161,872 + Psest_3992 0.90 -0.8 4,161,872 + Psest_3992 0.90 -1.6 4,161,872 + Psest_3992 0.90 -1.0 4,161,873 - -1.0 4,161,873 - -2.9 4,161,873 - -0.9 4,161,873 - +1.7 4,161,873 - -0.9 4,161,873 - -0.6 4,161,873 - -0.4 4,161,873 - +1.1 4,161,873 - -0.9 4,161,873 - -0.0 4,161,873 - -1.8 4,161,873 - +0.6 4,161,873 - -1.2 4,161,873 - -0.9 4,161,873 - +1.2 4,161,873 - +0.5 4,161,873 - -1.2 4,161,873 - -0.7 4,161,873 - -1.9 4,161,873 - +0.8 4,161,873 - +1.2 4,161,873 - -1.6 4,161,873 - +0.6 4,161,873 - -0.0 4,161,873 - +0.4 4,161,873 - +0.4 4,161,873 - -0.5 4,161,873 - +0.3 4,161,873 - -0.2 4,161,873 - +0.4 4,161,873 - +0.4 4,161,873 - +0.5 4,161,873 - -0.3 4,161,873 - +1.2 4,161,874 + +1.5 4,161,952 + -0.2 4,161,952 + -0.3 4,161,953 - +0.3 4,161,953 - +1.4 4,162,027 + Psest_3993 0.12 +1.4 4,162,027 + Psest_3993 0.12 +0.6 4,162,027 + Psest_3993 0.12 +0.8 4,162,027 + Psest_3993 0.12 +0.5 4,162,028 - Psest_3993 0.12 +0.2 4,162,028 - Psest_3993 0.12 +0.7 4,162,028 - Psest_3993 0.12 +0.5 4,162,028 - Psest_3993 0.12 -1.4 4,162,129 + Psest_3993 0.24 -0.9 4,162,129 + Psest_3993 0.24 -0.9 4,162,129 + Psest_3993 0.24 -0.3 4,162,129 + Psest_3993 0.24 +0.4 4,162,129 + Psest_3993 0.24 +0.0 4,162,130 - Psest_3993 0.24 -0.7 4,162,130 - Psest_3993 0.24 +0.6 4,162,130 - Psest_3993 0.24 +0.8 4,162,130 - Psest_3993 0.24 +0.6 4,162,130 - Psest_3993 0.24 -0.2 4,162,130 - Psest_3993 0.24 -0.7
Or see this region's nucleotide sequence