Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1422

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1420 and Psest_1421 overlap by 4 nucleotidesPsest_1421 and Psest_1422 are separated by 60 nucleotidesPsest_1422 and Psest_1423 are separated by 163 nucleotides Psest_1420: Psest_1420 - Lactoylglutathione lyase and related lyases, at 1,529,091 to 1,529,519 _1420 Psest_1421: Psest_1421 - Glutathione S-transferase, at 1,529,516 to 1,530,103 _1421 Psest_1422: Psest_1422 - Carbohydrate-selective porin, at 1,530,164 to 1,531,432 _1422 Psest_1423: Psest_1423 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 1,531,596 to 1,533,728 _1423 Position (kb) 1530 1531 1532Strain fitness (log2 ratio) -2 -1 0 1 2at 1529.525 kb on + strandat 1529.525 kb on + strandat 1529.525 kb on + strandat 1529.526 kb on - strandat 1529.526 kb on - strandat 1529.552 kb on + strandat 1529.552 kb on + strandat 1529.553 kb on - strandat 1529.553 kb on - strandat 1529.553 kb on - strandat 1529.553 kb on - strandat 1529.695 kb on + strand, within Psest_1421at 1529.726 kb on + strand, within Psest_1421at 1529.727 kb on - strand, within Psest_1421at 1529.991 kb on - strand, within Psest_1421at 1529.991 kb on - strand, within Psest_1421at 1530.137 kb on + strandat 1530.240 kb on + strandat 1530.241 kb on - strandat 1530.291 kb on + strand, within Psest_1422at 1530.291 kb on - strand, within Psest_1422at 1530.292 kb on - strand, within Psest_1422at 1530.292 kb on - strand, within Psest_1422at 1530.292 kb on - strand, within Psest_1422at 1530.306 kb on + strand, within Psest_1422at 1530.462 kb on + strand, within Psest_1422at 1530.462 kb on + strand, within Psest_1422at 1530.462 kb on + strand, within Psest_1422at 1530.462 kb on + strand, within Psest_1422at 1530.462 kb on + strand, within Psest_1422at 1530.462 kb on + strand, within Psest_1422at 1530.462 kb on + strand, within Psest_1422at 1530.462 kb on + strand, within Psest_1422at 1530.462 kb on + strand, within Psest_1422at 1530.636 kb on + strand, within Psest_1422at 1530.636 kb on + strand, within Psest_1422at 1530.636 kb on + strand, within Psest_1422at 1530.636 kb on + strand, within Psest_1422at 1530.637 kb on - strand, within Psest_1422at 1530.637 kb on - strand, within Psest_1422at 1530.637 kb on - strand, within Psest_1422at 1530.811 kb on - strand, within Psest_1422at 1530.811 kb on - strand, within Psest_1422at 1530.904 kb on + strand, within Psest_1422at 1530.904 kb on + strand, within Psest_1422at 1530.906 kb on + strand, within Psest_1422at 1530.906 kb on + strand, within Psest_1422at 1530.907 kb on - strand, within Psest_1422at 1530.907 kb on - strand, within Psest_1422at 1531.029 kb on + strand, within Psest_1422at 1531.030 kb on - strand, within Psest_1422at 1531.032 kb on + strand, within Psest_1422at 1531.032 kb on + strand, within Psest_1422at 1531.032 kb on + strand, within Psest_1422at 1531.033 kb on - strand, within Psest_1422at 1531.033 kb on - strand, within Psest_1422at 1531.033 kb on - strand, within Psest_1422at 1531.033 kb on - strand, within Psest_1422at 1531.033 kb on - strand, within Psest_1422at 1531.033 kb on - strand, within Psest_1422at 1531.033 kb on - strand, within Psest_1422at 1531.221 kb on + strand, within Psest_1422at 1531.222 kb on - strand, within Psest_1422at 1531.222 kb on - strand, within Psest_1422at 1531.275 kb on + strand, within Psest_1422at 1531.275 kb on + strand, within Psest_1422at 1531.275 kb on + strand, within Psest_1422at 1531.275 kb on + strand, within Psest_1422at 1531.275 kb on + strand, within Psest_1422at 1531.276 kb on - strand, within Psest_1422at 1531.276 kb on - strand, within Psest_1422at 1531.276 kb on - strand, within Psest_1422at 1531.292 kb on + strand, within Psest_1422at 1531.293 kb on - strand, within Psest_1422at 1531.452 kb on + strandat 1531.452 kb on + strandat 1531.453 kb on - strandat 1531.453 kb on - strandat 1531.544 kb on + strandat 1531.545 kb on - strandat 1531.545 kb on - strandat 1531.548 kb on + strandat 1531.548 kb on + strandat 1531.549 kb on - strandat 1531.549 kb on - strandat 1531.549 kb on - strandat 1531.549 kb on - strandat 1531.549 kb on - strandat 1531.571 kb on + strandat 1531.597 kb on + strandat 1531.598 kb on - strandat 1531.940 kb on + strand, within Psest_1423at 1531.993 kb on + strand, within Psest_1423at 1531.994 kb on - strand, within Psest_1423at 1531.994 kb on - strand, within Psest_1423at 1532.104 kb on + strand, within Psest_1423at 1532.104 kb on + strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.105 kb on - strand, within Psest_1423at 1532.110 kb on - strand, within Psest_1423at 1532.143 kb on + strand, within Psest_1423at 1532.176 kb on + strand, within Psest_1423at 1532.176 kb on + strand, within Psest_1423at 1532.177 kb on - strand, within Psest_1423at 1532.177 kb on - strand, within Psest_1423at 1532.366 kb on - strand, within Psest_1423

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,529,525 + -0.8
1,529,525 + -1.1
1,529,525 + +0.0
1,529,526 - -0.4
1,529,526 - -1.3
1,529,552 + +0.4
1,529,552 + +0.3
1,529,553 - +1.6
1,529,553 - -0.8
1,529,553 - +1.3
1,529,553 - -0.4
1,529,695 + Psest_1421 0.30 +0.9
1,529,726 + Psest_1421 0.36 +1.1
1,529,727 - Psest_1421 0.36 -1.6
1,529,991 - Psest_1421 0.81 +0.7
1,529,991 - Psest_1421 0.81 +2.4
1,530,137 + +1.3
1,530,240 + -1.8
1,530,241 - +1.6
1,530,291 + Psest_1422 0.10 +0.7
1,530,291 - Psest_1422 0.10 +1.7
1,530,292 - Psest_1422 0.10 -1.0
1,530,292 - Psest_1422 0.10 +1.3
1,530,292 - Psest_1422 0.10 -0.1
1,530,306 + Psest_1422 0.11 -2.3
1,530,462 + Psest_1422 0.23 +0.8
1,530,462 + Psest_1422 0.23 -0.0
1,530,462 + Psest_1422 0.23 -0.9
1,530,462 + Psest_1422 0.23 -1.1
1,530,462 + Psest_1422 0.23 +2.2
1,530,462 + Psest_1422 0.23 +0.9
1,530,462 + Psest_1422 0.23 -0.7
1,530,462 + Psest_1422 0.23 -1.9
1,530,462 + Psest_1422 0.23 -0.0
1,530,636 + Psest_1422 0.37 -0.0
1,530,636 + Psest_1422 0.37 -0.6
1,530,636 + Psest_1422 0.37 +1.1
1,530,636 + Psest_1422 0.37 +0.2
1,530,637 - Psest_1422 0.37 +0.2
1,530,637 - Psest_1422 0.37 +0.2
1,530,637 - Psest_1422 0.37 +1.0
1,530,811 - Psest_1422 0.51 +1.5
1,530,811 - Psest_1422 0.51 +1.1
1,530,904 + Psest_1422 0.58 -1.3
1,530,904 + Psest_1422 0.58 +0.6
1,530,906 + Psest_1422 0.58 +0.4
1,530,906 + Psest_1422 0.58 -0.8
1,530,907 - Psest_1422 0.59 +1.6
1,530,907 - Psest_1422 0.59 +0.4
1,531,029 + Psest_1422 0.68 +0.9
1,531,030 - Psest_1422 0.68 -0.4
1,531,032 + Psest_1422 0.68 +1.1
1,531,032 + Psest_1422 0.68 -0.9
1,531,032 + Psest_1422 0.68 +0.6
1,531,033 - Psest_1422 0.68 +0.8
1,531,033 - Psest_1422 0.68 +0.2
1,531,033 - Psest_1422 0.68 +0.4
1,531,033 - Psest_1422 0.68 +1.0
1,531,033 - Psest_1422 0.68 -0.0
1,531,033 - Psest_1422 0.68 -0.2
1,531,033 - Psest_1422 0.68 +1.1
1,531,221 + Psest_1422 0.83 +0.3
1,531,222 - Psest_1422 0.83 -1.0
1,531,222 - Psest_1422 0.83 -0.4
1,531,275 + Psest_1422 0.88 +1.1
1,531,275 + Psest_1422 0.88 +0.1
1,531,275 + Psest_1422 0.88 -0.2
1,531,275 + Psest_1422 0.88 +0.4
1,531,275 + Psest_1422 0.88 +0.2
1,531,276 - Psest_1422 0.88 +0.2
1,531,276 - Psest_1422 0.88 +0.3
1,531,276 - Psest_1422 0.88 +1.2
1,531,292 + Psest_1422 0.89 +1.2
1,531,293 - Psest_1422 0.89 +1.2
1,531,452 + -0.2
1,531,452 + +0.3
1,531,453 - +1.3
1,531,453 - -1.3
1,531,544 + -0.5
1,531,545 - -2.1
1,531,545 - +1.5
1,531,548 + +0.4
1,531,548 + +0.5
1,531,549 - -0.4
1,531,549 - -1.9
1,531,549 - +0.6
1,531,549 - +0.5
1,531,549 - -1.9
1,531,571 + +0.1
1,531,597 + -0.7
1,531,598 - +1.5
1,531,940 + Psest_1423 0.16 -1.1
1,531,993 + Psest_1423 0.19 -0.9
1,531,994 - Psest_1423 0.19 -0.7
1,531,994 - Psest_1423 0.19 -1.4
1,532,104 + Psest_1423 0.24 +0.3
1,532,104 + Psest_1423 0.24 -2.7
1,532,105 - Psest_1423 0.24 +0.9
1,532,105 - Psest_1423 0.24 -1.2
1,532,105 - Psest_1423 0.24 -1.6
1,532,105 - Psest_1423 0.24 +0.4
1,532,105 - Psest_1423 0.24 -0.1
1,532,105 - Psest_1423 0.24 -0.0
1,532,105 - Psest_1423 0.24 -0.4
1,532,105 - Psest_1423 0.24 +0.3
1,532,105 - Psest_1423 0.24 -1.0
1,532,105 - Psest_1423 0.24 -2.2
1,532,105 - Psest_1423 0.24 -2.1
1,532,105 - Psest_1423 0.24 -1.4
1,532,105 - Psest_1423 0.24 +1.7
1,532,110 - Psest_1423 0.24 -0.4
1,532,143 + Psest_1423 0.26 +0.9
1,532,176 + Psest_1423 0.27 -0.7
1,532,176 + Psest_1423 0.27 -0.1
1,532,177 - Psest_1423 0.27 +0.4
1,532,177 - Psest_1423 0.27 -0.4
1,532,366 - Psest_1423 0.36 -0.9

Or see this region's nucleotide sequence