Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25485

Experiment: 4-Hydroxybenzoic Acid (C) 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS25480 and PFLU_RS25485 are separated by 114 nucleotidesPFLU_RS25485 and PFLU_RS25490 overlap by 4 nucleotides PFLU_RS25480: PFLU_RS25480 - muconate cycloisomerase, at 5,686,919 to 5,688,046 _RS25480 PFLU_RS25485: PFLU_RS25485 - LysR family transcriptional regulator, at 5,688,161 to 5,689,036 _RS25485 PFLU_RS25490: PFLU_RS25490 - helix-turn-helix domain-containing protein, at 5,689,033 to 5,690,019 _RS25490 Position (kb) 5688 5689 5690Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5687.332 kb on + strand, within PFLU_RS25480at 5687.332 kb on + strand, within PFLU_RS25480at 5687.332 kb on + strand, within PFLU_RS25480at 5687.332 kb on + strand, within PFLU_RS25480at 5687.333 kb on - strand, within PFLU_RS25480at 5687.333 kb on - strand, within PFLU_RS25480at 5687.681 kb on + strand, within PFLU_RS25480at 5687.788 kb on + strand, within PFLU_RS25480at 5687.788 kb on + strand, within PFLU_RS25480at 5687.788 kb on + strand, within PFLU_RS25480at 5687.789 kb on - strand, within PFLU_RS25480at 5687.789 kb on - strand, within PFLU_RS25480at 5687.789 kb on - strand, within PFLU_RS25480at 5687.872 kb on - strand, within PFLU_RS25480at 5688.051 kb on - strandat 5688.070 kb on + strandat 5688.094 kb on + strandat 5688.100 kb on + strandat 5688.100 kb on + strandat 5688.100 kb on + strandat 5688.101 kb on - strandat 5688.101 kb on - strandat 5688.101 kb on - strandat 5688.101 kb on - strandat 5688.101 kb on - strandat 5688.101 kb on - strandat 5688.116 kb on - strandat 5688.183 kb on - strandat 5688.311 kb on - strand, within PFLU_RS25485at 5688.311 kb on - strand, within PFLU_RS25485at 5688.351 kb on - strand, within PFLU_RS25485at 5688.351 kb on - strand, within PFLU_RS25485at 5688.351 kb on - strand, within PFLU_RS25485at 5688.351 kb on - strand, within PFLU_RS25485at 5688.409 kb on + strand, within PFLU_RS25485at 5688.465 kb on - strand, within PFLU_RS25485at 5688.761 kb on + strand, within PFLU_RS25485at 5688.761 kb on + strand, within PFLU_RS25485at 5688.761 kb on + strand, within PFLU_RS25485at 5688.762 kb on - strand, within PFLU_RS25485at 5688.762 kb on - strand, within PFLU_RS25485at 5688.762 kb on - strand, within PFLU_RS25485at 5688.762 kb on - strand, within PFLU_RS25485at 5688.762 kb on - strand, within PFLU_RS25485at 5688.762 kb on - strand, within PFLU_RS25485at 5688.762 kb on - strand, within PFLU_RS25485at 5688.883 kb on - strand, within PFLU_RS25485at 5688.924 kb on - strand, within PFLU_RS25485at 5688.925 kb on + strand, within PFLU_RS25485at 5688.925 kb on + strand, within PFLU_RS25485at 5688.925 kb on + strand, within PFLU_RS25485at 5688.925 kb on + strand, within PFLU_RS25485at 5688.925 kb on + strand, within PFLU_RS25485at 5688.926 kb on - strand, within PFLU_RS25485at 5688.926 kb on - strand, within PFLU_RS25485at 5688.926 kb on - strand, within PFLU_RS25485at 5688.926 kb on - strand, within PFLU_RS25485at 5689.034 kb on + strandat 5689.034 kb on + strandat 5689.035 kb on - strandat 5689.035 kb on - strandat 5689.131 kb on + strandat 5689.215 kb on - strand, within PFLU_RS25490at 5689.226 kb on + strand, within PFLU_RS25490at 5689.227 kb on - strand, within PFLU_RS25490at 5689.227 kb on - strand, within PFLU_RS25490at 5689.250 kb on + strand, within PFLU_RS25490at 5689.346 kb on + strand, within PFLU_RS25490at 5689.346 kb on + strand, within PFLU_RS25490at 5689.346 kb on + strand, within PFLU_RS25490at 5689.346 kb on + strand, within PFLU_RS25490at 5689.346 kb on + strand, within PFLU_RS25490at 5689.346 kb on + strand, within PFLU_RS25490at 5689.347 kb on - strand, within PFLU_RS25490at 5689.347 kb on - strand, within PFLU_RS25490at 5689.347 kb on - strand, within PFLU_RS25490at 5689.347 kb on - strand, within PFLU_RS25490at 5689.347 kb on - strand, within PFLU_RS25490at 5689.367 kb on + strand, within PFLU_RS25490at 5689.368 kb on - strand, within PFLU_RS25490at 5689.368 kb on - strand, within PFLU_RS25490at 5689.368 kb on - strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.412 kb on + strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.413 kb on - strand, within PFLU_RS25490at 5689.487 kb on + strand, within PFLU_RS25490at 5689.487 kb on + strand, within PFLU_RS25490at 5689.487 kb on + strand, within PFLU_RS25490at 5689.487 kb on + strand, within PFLU_RS25490at 5689.487 kb on + strand, within PFLU_RS25490at 5689.487 kb on + strand, within PFLU_RS25490at 5689.487 kb on + strand, within PFLU_RS25490at 5689.488 kb on - strand, within PFLU_RS25490at 5689.488 kb on - strand, within PFLU_RS25490at 5689.488 kb on - strand, within PFLU_RS25490at 5689.488 kb on - strand, within PFLU_RS25490at 5689.488 kb on - strand, within PFLU_RS25490at 5689.523 kb on + strand, within PFLU_RS25490at 5689.523 kb on + strand, within PFLU_RS25490at 5689.523 kb on + strand, within PFLU_RS25490at 5689.524 kb on - strand, within PFLU_RS25490at 5689.524 kb on - strand, within PFLU_RS25490at 5689.561 kb on + strand, within PFLU_RS25490at 5689.561 kb on + strand, within PFLU_RS25490at 5689.802 kb on + strand, within PFLU_RS25490at 5689.802 kb on + strand, within PFLU_RS25490at 5689.802 kb on + strand, within PFLU_RS25490at 5689.802 kb on + strand, within PFLU_RS25490at 5689.802 kb on + strand, within PFLU_RS25490at 5689.802 kb on + strand, within PFLU_RS25490at 5689.802 kb on + strand, within PFLU_RS25490at 5689.802 kb on + strand, within PFLU_RS25490at 5689.803 kb on - strand, within PFLU_RS25490at 5689.803 kb on - strand, within PFLU_RS25490at 5689.803 kb on - strand, within PFLU_RS25490at 5689.853 kb on + strand, within PFLU_RS25490

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) 1.5 mM
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5,687,332 + PFLU_RS25480 0.37 -1.2
5,687,332 + PFLU_RS25480 0.37 +0.4
5,687,332 + PFLU_RS25480 0.37 +0.2
5,687,332 + PFLU_RS25480 0.37 -0.4
5,687,333 - PFLU_RS25480 0.37 +0.3
5,687,333 - PFLU_RS25480 0.37 +0.3
5,687,681 + PFLU_RS25480 0.68 -0.1
5,687,788 + PFLU_RS25480 0.77 -0.4
5,687,788 + PFLU_RS25480 0.77 -0.8
5,687,788 + PFLU_RS25480 0.77 -0.8
5,687,789 - PFLU_RS25480 0.77 -0.2
5,687,789 - PFLU_RS25480 0.77 -0.0
5,687,789 - PFLU_RS25480 0.77 -1.2
5,687,872 - PFLU_RS25480 0.84 +1.0
5,688,051 - -0.2
5,688,070 + -0.8
5,688,094 + +1.8
5,688,100 + -0.5
5,688,100 + -0.0
5,688,100 + +0.0
5,688,101 - -2.1
5,688,101 - +0.3
5,688,101 - -0.0
5,688,101 - -1.0
5,688,101 - -1.2
5,688,101 - +0.3
5,688,116 - +0.8
5,688,183 - -0.6
5,688,311 - PFLU_RS25485 0.17 +1.8
5,688,311 - PFLU_RS25485 0.17 +2.3
5,688,351 - PFLU_RS25485 0.22 -0.0
5,688,351 - PFLU_RS25485 0.22 +1.3
5,688,351 - PFLU_RS25485 0.22 +0.8
5,688,351 - PFLU_RS25485 0.22 -0.6
5,688,409 + PFLU_RS25485 0.28 +1.3
5,688,465 - PFLU_RS25485 0.35 +0.2
5,688,761 + PFLU_RS25485 0.68 +0.1
5,688,761 + PFLU_RS25485 0.68 +1.4
5,688,761 + PFLU_RS25485 0.68 +1.1
5,688,762 - PFLU_RS25485 0.69 +1.5
5,688,762 - PFLU_RS25485 0.69 +0.3
5,688,762 - PFLU_RS25485 0.69 +1.3
5,688,762 - PFLU_RS25485 0.69 -0.7
5,688,762 - PFLU_RS25485 0.69 +1.8
5,688,762 - PFLU_RS25485 0.69 -0.1
5,688,762 - PFLU_RS25485 0.69 -1.6
5,688,883 - PFLU_RS25485 0.82 -0.0
5,688,924 - PFLU_RS25485 0.87 +0.1
5,688,925 + PFLU_RS25485 0.87 +0.2
5,688,925 + PFLU_RS25485 0.87 +0.8
5,688,925 + PFLU_RS25485 0.87 +0.3
5,688,925 + PFLU_RS25485 0.87 -0.7
5,688,925 + PFLU_RS25485 0.87 +2.8
5,688,926 - PFLU_RS25485 0.87 -1.0
5,688,926 - PFLU_RS25485 0.87 -1.0
5,688,926 - PFLU_RS25485 0.87 +1.1
5,688,926 - PFLU_RS25485 0.87 -0.2
5,689,034 + -0.1
5,689,034 + +0.4
5,689,035 - -1.0
5,689,035 - -2.1
5,689,131 + -1.5
5,689,215 - PFLU_RS25490 0.18 -0.5
5,689,226 + PFLU_RS25490 0.20 -0.9
5,689,227 - PFLU_RS25490 0.20 -1.0
5,689,227 - PFLU_RS25490 0.20 +1.3
5,689,250 + PFLU_RS25490 0.22 -0.1
5,689,346 + PFLU_RS25490 0.32 +0.0
5,689,346 + PFLU_RS25490 0.32 +0.5
5,689,346 + PFLU_RS25490 0.32 -1.8
5,689,346 + PFLU_RS25490 0.32 -0.5
5,689,346 + PFLU_RS25490 0.32 +0.5
5,689,346 + PFLU_RS25490 0.32 -0.9
5,689,347 - PFLU_RS25490 0.32 +0.4
5,689,347 - PFLU_RS25490 0.32 -0.6
5,689,347 - PFLU_RS25490 0.32 +0.5
5,689,347 - PFLU_RS25490 0.32 +0.3
5,689,347 - PFLU_RS25490 0.32 +0.2
5,689,367 + PFLU_RS25490 0.34 +2.2
5,689,368 - PFLU_RS25490 0.34 +0.4
5,689,368 - PFLU_RS25490 0.34 +1.3
5,689,368 - PFLU_RS25490 0.34 +0.1
5,689,412 + PFLU_RS25490 0.38 +0.6
5,689,412 + PFLU_RS25490 0.38 +0.6
5,689,412 + PFLU_RS25490 0.38 -0.3
5,689,412 + PFLU_RS25490 0.38 +0.8
5,689,412 + PFLU_RS25490 0.38 +1.6
5,689,412 + PFLU_RS25490 0.38 +0.5
5,689,412 + PFLU_RS25490 0.38 +0.6
5,689,412 + PFLU_RS25490 0.38 -2.1
5,689,412 + PFLU_RS25490 0.38 +0.3
5,689,412 + PFLU_RS25490 0.38 +0.8
5,689,412 + PFLU_RS25490 0.38 +0.3
5,689,412 + PFLU_RS25490 0.38 +0.5
5,689,413 - PFLU_RS25490 0.39 -0.8
5,689,413 - PFLU_RS25490 0.39 +3.0
5,689,413 - PFLU_RS25490 0.39 +0.4
5,689,413 - PFLU_RS25490 0.39 +0.8
5,689,413 - PFLU_RS25490 0.39 +0.1
5,689,413 - PFLU_RS25490 0.39 -1.0
5,689,413 - PFLU_RS25490 0.39 +1.3
5,689,413 - PFLU_RS25490 0.39 +0.6
5,689,413 - PFLU_RS25490 0.39 -1.6
5,689,413 - PFLU_RS25490 0.39 -0.8
5,689,413 - PFLU_RS25490 0.39 -1.4
5,689,413 - PFLU_RS25490 0.39 -0.5
5,689,487 + PFLU_RS25490 0.46 +0.3
5,689,487 + PFLU_RS25490 0.46 -1.8
5,689,487 + PFLU_RS25490 0.46 +0.1
5,689,487 + PFLU_RS25490 0.46 +0.5
5,689,487 + PFLU_RS25490 0.46 -0.1
5,689,487 + PFLU_RS25490 0.46 +1.1
5,689,487 + PFLU_RS25490 0.46 +0.5
5,689,488 - PFLU_RS25490 0.46 -1.5
5,689,488 - PFLU_RS25490 0.46 -0.4
5,689,488 - PFLU_RS25490 0.46 -0.6
5,689,488 - PFLU_RS25490 0.46 +0.4
5,689,488 - PFLU_RS25490 0.46 -0.9
5,689,523 + PFLU_RS25490 0.50 -0.7
5,689,523 + PFLU_RS25490 0.50 -0.7
5,689,523 + PFLU_RS25490 0.50 -0.2
5,689,524 - PFLU_RS25490 0.50 +1.5
5,689,524 - PFLU_RS25490 0.50 -0.2
5,689,561 + PFLU_RS25490 0.53 -0.5
5,689,561 + PFLU_RS25490 0.53 -0.5
5,689,802 + PFLU_RS25490 0.78 -0.7
5,689,802 + PFLU_RS25490 0.78 -1.7
5,689,802 + PFLU_RS25490 0.78 +1.1
5,689,802 + PFLU_RS25490 0.78 +0.8
5,689,802 + PFLU_RS25490 0.78 -0.7
5,689,802 + PFLU_RS25490 0.78 +1.1
5,689,802 + PFLU_RS25490 0.78 -0.2
5,689,802 + PFLU_RS25490 0.78 -1.2
5,689,803 - PFLU_RS25490 0.78 -0.0
5,689,803 - PFLU_RS25490 0.78 +0.4
5,689,803 - PFLU_RS25490 0.78 +2.8
5,689,853 + PFLU_RS25490 0.83 +0.1

Or see this region's nucleotide sequence