Experiment: 4-Hydroxybenzoic Acid (C) 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS19630 and PFLU_RS19635 are separated by 110 nucleotides PFLU_RS19635 and PFLU_RS19640 are separated by 94 nucleotides PFLU_RS19640 and PFLU_RS19645 overlap by 4 nucleotides PFLU_RS19645 and PFLU_RS19650 overlap by 4 nucleotides
PFLU_RS19630: PFLU_RS19630 - amino acid ABC transporter permease, at 4,444,698 to 4,445,399
_RS19630
PFLU_RS19635: PFLU_RS19635 - SDR family oxidoreductase, at 4,445,510 to 4,446,262
_RS19635
PFLU_RS19640: PFLU_RS19640 - 5-oxoprolinase subunit PxpA, at 4,446,357 to 4,447,130
_RS19640
PFLU_RS19645: PFLU_RS19645 - hypothetical protein, at 4,447,127 to 4,447,519
_RS19645
PFLU_RS19650: PFLU_RS19650 - biotin-dependent carboxyltransferase family protein, at 4,447,516 to 4,448,490
_RS19650
Position (kb) 4446
4447
4448 Strain fitness (log2 ratio) -1
0
1
2
3 at 4445.500 kb on + strand at 4445.520 kb on + strand at 4445.521 kb on - strand at 4445.521 kb on - strand at 4445.829 kb on + strand, within PFLU_RS19635 at 4445.853 kb on + strand, within PFLU_RS19635 at 4445.853 kb on + strand, within PFLU_RS19635 at 4445.854 kb on - strand, within PFLU_RS19635 at 4445.854 kb on - strand, within PFLU_RS19635 at 4446.185 kb on + strand, within PFLU_RS19635 at 4446.185 kb on + strand, within PFLU_RS19635 at 4446.185 kb on + strand, within PFLU_RS19635 at 4446.300 kb on + strand at 4446.358 kb on + strand at 4446.359 kb on - strand at 4446.389 kb on + strand at 4446.389 kb on + strand at 4446.389 kb on + strand at 4446.389 kb on + strand at 4446.389 kb on + strand at 4446.389 kb on + strand at 4446.389 kb on + strand at 4446.390 kb on - strand at 4446.390 kb on - strand at 4446.865 kb on + strand, within PFLU_RS19640 at 4446.865 kb on + strand, within PFLU_RS19640 at 4446.865 kb on + strand, within PFLU_RS19640 at 4446.866 kb on - strand, within PFLU_RS19640 at 4446.866 kb on - strand, within PFLU_RS19640 at 4446.866 kb on - strand, within PFLU_RS19640 at 4446.874 kb on + strand, within PFLU_RS19640 at 4446.874 kb on + strand, within PFLU_RS19640 at 4446.874 kb on + strand, within PFLU_RS19640 at 4446.874 kb on + strand, within PFLU_RS19640 at 4446.874 kb on + strand, within PFLU_RS19640 at 4446.875 kb on - strand, within PFLU_RS19640 at 4447.130 kb on + strand at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.193 kb on + strand, within PFLU_RS19645 at 4447.194 kb on - strand, within PFLU_RS19645 at 4447.194 kb on - strand, within PFLU_RS19645 at 4447.194 kb on - strand, within PFLU_RS19645 at 4447.194 kb on - strand, within PFLU_RS19645 at 4447.525 kb on + strand at 4447.526 kb on - strand at 4447.526 kb on - strand at 4447.572 kb on - strand at 4447.610 kb on + strand at 4447.610 kb on + strand at 4447.610 kb on + strand at 4447.610 kb on + strand at 4447.919 kb on + strand, within PFLU_RS19650 at 4447.919 kb on + strand, within PFLU_RS19650 at 4447.919 kb on + strand, within PFLU_RS19650 at 4447.920 kb on - strand, within PFLU_RS19650
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) 1.5 mM remove 4,445,500 + -0.5 4,445,520 + +0.5 4,445,521 - -0.5 4,445,521 - +0.8 4,445,829 + PFLU_RS19635 0.42 -0.0 4,445,853 + PFLU_RS19635 0.46 +0.2 4,445,853 + PFLU_RS19635 0.46 -0.4 4,445,854 - PFLU_RS19635 0.46 -1.6 4,445,854 - PFLU_RS19635 0.46 +0.4 4,446,185 + PFLU_RS19635 0.90 +1.5 4,446,185 + PFLU_RS19635 0.90 -0.4 4,446,185 + PFLU_RS19635 0.90 -0.5 4,446,300 + -0.2 4,446,358 + -1.0 4,446,359 - -0.1 4,446,389 + +0.1 4,446,389 + +1.0 4,446,389 + -0.5 4,446,389 + -0.9 4,446,389 + +1.0 4,446,389 + +0.1 4,446,389 + +1.1 4,446,390 - -0.5 4,446,390 - -0.7 4,446,865 + PFLU_RS19640 0.66 +1.4 4,446,865 + PFLU_RS19640 0.66 +1.5 4,446,865 + PFLU_RS19640 0.66 +0.2 4,446,866 - PFLU_RS19640 0.66 +0.4 4,446,866 - PFLU_RS19640 0.66 +0.5 4,446,866 - PFLU_RS19640 0.66 -1.3 4,446,874 + PFLU_RS19640 0.67 -1.3 4,446,874 + PFLU_RS19640 0.67 +1.2 4,446,874 + PFLU_RS19640 0.67 +2.2 4,446,874 + PFLU_RS19640 0.67 +0.4 4,446,874 + PFLU_RS19640 0.67 +0.4 4,446,875 - PFLU_RS19640 0.67 -1.0 4,447,130 + +0.8 4,447,193 + PFLU_RS19645 0.17 +0.1 4,447,193 + PFLU_RS19645 0.17 -1.4 4,447,193 + PFLU_RS19645 0.17 +0.4 4,447,193 + PFLU_RS19645 0.17 -1.3 4,447,193 + PFLU_RS19645 0.17 -0.6 4,447,193 + PFLU_RS19645 0.17 +0.2 4,447,193 + PFLU_RS19645 0.17 +3.3 4,447,193 + PFLU_RS19645 0.17 +1.2 4,447,193 + PFLU_RS19645 0.17 +0.1 4,447,193 + PFLU_RS19645 0.17 -0.2 4,447,193 + PFLU_RS19645 0.17 +0.4 4,447,193 + PFLU_RS19645 0.17 +0.3 4,447,193 + PFLU_RS19645 0.17 -0.8 4,447,193 + PFLU_RS19645 0.17 +1.5 4,447,194 - PFLU_RS19645 0.17 -0.2 4,447,194 - PFLU_RS19645 0.17 +0.8 4,447,194 - PFLU_RS19645 0.17 +0.3 4,447,194 - PFLU_RS19645 0.17 -0.0 4,447,525 + +2.0 4,447,526 - -1.2 4,447,526 - +0.9 4,447,572 - -0.5 4,447,610 + +1.2 4,447,610 + +0.6 4,447,610 + +1.5 4,447,610 + +1.0 4,447,919 + PFLU_RS19650 0.41 +1.0 4,447,919 + PFLU_RS19650 0.41 -0.6 4,447,919 + PFLU_RS19650 0.41 -0.3 4,447,920 - PFLU_RS19650 0.41 -1.3
Or see this region's nucleotide sequence