Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16790

Experiment: 4-Hydroxybenzoic Acid (C) 1.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid (C) 1.5 mM
3,808,175	-		PFLU_RS16780	0.77	+2.4
3,808,175	-		PFLU_RS16780	0.77	+0.1
3,808,223	+		PFLU_RS16780	0.80	+0.2
3,808,270	+		PFLU_RS16780	0.83	-1.0
3,808,270	+		PFLU_RS16780	0.83	-1.4
3,808,270	+		PFLU_RS16780	0.83	-0.9
3,808,270	+		PFLU_RS16780	0.83	+0.7
3,808,270	+		PFLU_RS16780	0.83	-0.6
3,808,270	+		PFLU_RS16780	0.83	-2.3
3,808,270	+		PFLU_RS16780	0.83	-1.7
3,808,271	-		PFLU_RS16780	0.83	-0.0
3,808,271	-		PFLU_RS16780	0.83	+0.6
3,808,271	-		PFLU_RS16780	0.83	+2.0
3,808,271	-		PFLU_RS16780	0.83	-0.2
3,808,271	-		PFLU_RS16780	0.83	-0.2
3,808,271	-		PFLU_RS16780	0.83	-1.6
3,808,271	-		PFLU_RS16780	0.83	-1.6
3,808,271	-		PFLU_RS16780	0.83	+0.2
3,808,282	+		PFLU_RS16780	0.84	+0.4
3,808,283	-		PFLU_RS16780	0.84	+0.8
3,808,283	-		PFLU_RS16780	0.84	-1.0
3,808,285	+		PFLU_RS16780	0.84	-0.2
3,808,285	+		PFLU_RS16780	0.84	+0.6
3,808,285	+		PFLU_RS16780	0.84	-0.4
3,808,285	+		PFLU_RS16780	0.84	+0.0
3,808,286	-		PFLU_RS16780	0.84	-1.1
3,808,286	-		PFLU_RS16780	0.84	-0.8
3,808,286	-		PFLU_RS16780	0.84	+0.4
3,808,286	-		PFLU_RS16780	0.84	+0.3
3,808,286	-		PFLU_RS16780	0.84	+0.2
3,808,512	+				-0.2
3,808,512	+				+0.4
3,808,512	+				+0.0
3,808,513	-				+1.1
3,808,513	-				+0.2
3,808,516	+				-0.3
3,808,516	+				-0.0
3,808,516	+				+0.3
3,808,517	-				+0.2
3,808,517	-				+0.0
3,808,571	+				-0.2
3,808,571	+				+0.7
3,808,571	+				+1.4
3,808,571	+				+0.0
3,808,571	+				+0.8
3,808,571	+				-0.7
3,808,571	+				-0.7
3,808,571	+				+0.1
3,808,571	+				+0.4
3,808,571	+				-0.2
3,808,571	+				-1.4
3,808,571	+				+1.4
3,808,572	-				+1.2
3,808,572	-				+0.6
3,808,572	-				-1.5
3,808,572	-				+0.4
3,808,572	-				+0.6
3,808,572	-				+1.3
3,808,572	-				+0.6
3,808,572	-				-0.4
3,808,572	-				+0.4
3,808,572	-				+0.7
3,808,572	-				+0.3
3,808,572	-				+2.3
3,808,572	-				+0.5
3,808,581	-				+1.0
3,808,639	+		PFLU_RS16785	0.13	+0.6
3,808,640	-		PFLU_RS16785	0.13	-0.4
3,808,909	-		PFLU_RS16785	0.66	+1.0
3,809,043	-				+0.8
3,809,049	+				+0.8
3,809,050	-				-1.7
3,809,050	-				-1.8
3,809,050	-				+1.1
3,809,116	-				-0.5
3,809,142	-				-0.5
3,809,171	+		PFLU_RS16790	0.13	+1.9
3,809,363	+		PFLU_RS16790	0.34	+0.7
3,809,363	+		PFLU_RS16790	0.34	-0.5
3,809,363	+		PFLU_RS16790	0.34	-0.1
3,809,364	-		PFLU_RS16790	0.34	-0.2
3,809,364	-		PFLU_RS16790	0.34	-0.4
3,809,650	+		PFLU_RS16790	0.65	+1.0
3,809,651	-		PFLU_RS16790	0.65	+1.8
3,809,760	+		PFLU_RS16790	0.77	+0.3
3,809,760	+		PFLU_RS16790	0.77	+0.3
3,809,761	-		PFLU_RS16790	0.77	-0.3
3,809,761	-		PFLU_RS16790	0.77	+0.3
3,809,761	-		PFLU_RS16790	0.77	-0.4
3,809,761	-		PFLU_RS16790	0.77	+3.2
3,809,765	+		PFLU_RS16790	0.77	+0.9
3,809,765	+		PFLU_RS16790	0.77	+1.4
3,809,765	+		PFLU_RS16790	0.77	+0.4
3,809,765	+		PFLU_RS16790	0.77	+1.4
3,809,766	-		PFLU_RS16790	0.77	+1.8
3,809,766	-		PFLU_RS16790	0.77	+0.8
3,809,873	+		PFLU_RS16790	0.89	+0.3
3,809,970	+				-1.0
3,809,970	+				-0.6
3,809,970	+				+0.4
3,809,971	-				+0.3
3,809,976	+				+0.8
3,809,976	+				-0.6
3,809,976	+				+1.0
3,809,976	+				+0.4
3,809,976	+				+0.4
3,809,976	+				-0.3
3,809,977	-				+0.5
3,810,065	+				+1.4
3,810,065	+				+0.8
3,810,065	+				+0.6
3,810,066	-				+1.4
3,810,066	-				-0.2
3,810,066	-				-0.7
3,810,066	-				-1.4
3,810,066	-				+0.3
3,810,066	-				-0.2
3,810,066	-				+0.7
3,810,066	-				-1.2
3,810,066	-				-0.8
3,810,084	-				-0.7
3,810,184	-				+4.0
3,810,204	+				+0.0
3,810,204	+				-0.6
3,810,205	-				-0.0
3,810,205	-				-0.7
3,810,229	+				+0.7
3,810,229	+				+0.9
3,810,229	+				+0.0
3,810,230	-				+2.0
3,810,230	-				-1.9
3,810,277	+		PFLU_RS16795	0.13	+0.2
3,810,397	+		PFLU_RS16795	0.25	-0.6
3,810,398	-		PFLU_RS16795	0.25	-0.6
3,810,398	-		PFLU_RS16795	0.25	-0.2
3,810,429	-		PFLU_RS16795	0.28	+0.8
3,810,429	-		PFLU_RS16795	0.28	+0.7
3,810,503	-		PFLU_RS16795	0.35	+0.7
3,810,503	-		PFLU_RS16795	0.35	+0.6
3,810,532	+		PFLU_RS16795	0.38	+0.3
3,810,532	+		PFLU_RS16795	0.38	-0.5
3,810,532	+		PFLU_RS16795	0.38	+0.7
3,810,532	+		PFLU_RS16795	0.38	-0.4
3,810,533	-		PFLU_RS16795	0.38	-0.9
3,810,583	-		PFLU_RS16795	0.43	+1.0
3,810,583	-		PFLU_RS16795	0.43	+0.1
3,810,661	+		PFLU_RS16795	0.51	+0.8
3,810,661	+		PFLU_RS16795	0.51	-0.9
3,810,661	+		PFLU_RS16795	0.51	-1.7
3,810,661	+		PFLU_RS16795	0.51	+0.2
3,810,661	+		PFLU_RS16795	0.51	+0.0
3,810,661	+		PFLU_RS16795	0.51	-0.1
3,810,661	+		PFLU_RS16795	0.51	-1.7
3,810,661	+		PFLU_RS16795	0.51	+0.6
3,810,662	-		PFLU_RS16795	0.51	+0.0
3,810,662	-		PFLU_RS16795	0.51	+0.2
3,810,662	-		PFLU_RS16795	0.51	-0.7
3,810,662	-		PFLU_RS16795	0.51	+0.3
3,810,662	-		PFLU_RS16795	0.51	-0.3
3,810,662	-		PFLU_RS16795	0.51	-1.3
3,810,728	+		PFLU_RS16795	0.57	-0.6
3,810,728	+		PFLU_RS16795	0.57	+1.3
3,810,729	-		PFLU_RS16795	0.57	+0.4
3,810,729	-		PFLU_RS16795	0.57	+0.6
3,810,729	-		PFLU_RS16795	0.57	-0.2
3,810,729	-		PFLU_RS16795	0.57	-0.4
3,810,754	+		PFLU_RS16795	0.60	-0.9
3,810,754	+		PFLU_RS16795	0.60	-0.9
3,810,755	-		PFLU_RS16795	0.60	+0.1
3,810,755	-		PFLU_RS16795	0.60	-1.0
3,810,755	-		PFLU_RS16795	0.60	+0.1
3,810,755	-		PFLU_RS16795	0.60	-0.3
3,810,838	+		PFLU_RS16795	0.68	+0.4
3,810,838	+		PFLU_RS16795	0.68	-0.0
3,810,839	-		PFLU_RS16795	0.68	-1.2
3,810,848	-		PFLU_RS16795	0.69	+0.6
3,810,848	-		PFLU_RS16795	0.69	+3.4