Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS07880

Experiment: 4-Hydroxybenzoic Acid (C) 1.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid (C) 1.5 mM
1,753,924	+		PFLU_RS07875	0.58	+1.0
1,753,924	+		PFLU_RS07875	0.58	-0.2
1,753,924	+		PFLU_RS07875	0.58	+0.5
1,753,924	+		PFLU_RS07875	0.58	-2.1
1,753,925	-		PFLU_RS07875	0.58	-0.7
1,753,925	-		PFLU_RS07875	0.58	+1.2
1,753,925	-		PFLU_RS07875	0.58	+0.3
1,753,925	-		PFLU_RS07875	0.58	-0.6
1,753,975	+		PFLU_RS07875	0.81	-1.0
1,753,975	+		PFLU_RS07875	0.81	-2.8
1,753,975	+		PFLU_RS07875	0.81	-0.1
1,753,975	+		PFLU_RS07875	0.81	-0.2
1,753,975	+		PFLU_RS07875	0.81	+0.5
1,753,975	+		PFLU_RS07875	0.81	-1.6
1,753,975	+		PFLU_RS07875	0.81	+0.3
1,753,975	+		PFLU_RS07875	0.81	-0.2
1,753,976	-		PFLU_RS07875	0.81	-0.4
1,753,976	-		PFLU_RS07875	0.81	+0.9
1,753,976	-		PFLU_RS07875	0.81	-0.7
1,753,976	-		PFLU_RS07875	0.81	-0.4
1,753,976	-		PFLU_RS07875	0.81	+0.8
1,753,976	-		PFLU_RS07875	0.81	+0.6
1,753,976	-		PFLU_RS07875	0.81	-0.9
1,753,976	-		PFLU_RS07875	0.81	-0.6
1,753,976	-		PFLU_RS07875	0.81	+3.3
1,753,979	+		PFLU_RS07875	0.82	+0.9
1,753,979	+		PFLU_RS07875	0.82	-0.7
1,753,979	+		PFLU_RS07875	0.82	+1.3
1,753,979	+		PFLU_RS07875	0.82	+1.0
1,753,979	+		PFLU_RS07875	0.82	+1.7
1,753,979	+		PFLU_RS07875	0.82	+0.1
1,753,979	+		PFLU_RS07875	0.82	-0.6
1,753,979	+		PFLU_RS07875	0.82	-0.1
1,753,980	-		PFLU_RS07875	0.83	-2.0
1,753,980	-		PFLU_RS07875	0.83	-0.3
1,753,980	-		PFLU_RS07875	0.83	-0.8
1,753,980	-		PFLU_RS07875	0.83	-1.4
1,753,980	-		PFLU_RS07875	0.83	-0.8
1,753,980	-		PFLU_RS07875	0.83	+1.1
1,753,980	-		PFLU_RS07875	0.83	+0.8
1,753,980	-		PFLU_RS07875	0.83	-2.3
1,753,980	-		PFLU_RS07875	0.83	-0.7
1,753,980	-		PFLU_RS07875	0.83	+0.2
1,753,980	-		PFLU_RS07875	0.83	+0.1
1,753,980	-		PFLU_RS07875	0.83	-0.0
1,753,988	+		PFLU_RS07875	0.86	+0.4
1,753,988	+		PFLU_RS07875	0.86	+1.9
1,753,988	+		PFLU_RS07875	0.86	+0.1
1,753,988	+		PFLU_RS07875	0.86	-1.0
1,753,988	+		PFLU_RS07875	0.86	-1.0
1,753,988	+		PFLU_RS07875	0.86	-0.2
1,753,989	-		PFLU_RS07875	0.87	-0.6
1,753,989	-		PFLU_RS07875	0.87	-1.2
1,753,989	-		PFLU_RS07875	0.87	-0.5
1,753,989	-		PFLU_RS07875	0.87	-2.3
1,754,001	+				-0.3
1,754,001	+				+0.1
1,754,002	-				+2.7
1,754,082	-				-1.5
1,754,103	+				-0.6
1,754,104	-				-0.1
1,754,274	+				-1.1
1,754,326	-				-1.9
1,754,375	+				-0.9
1,754,375	+				-0.2
1,754,376	-				-0.2
1,754,516	-		PFLU_RS07880	0.19	-0.3
1,754,516	-		PFLU_RS07880	0.19	-0.0
1,754,516	-		PFLU_RS07880	0.19	-0.7
1,754,532	+		PFLU_RS07880	0.21	+0.9
1,754,532	+		PFLU_RS07880	0.21	+0.7
1,754,532	+		PFLU_RS07880	0.21	+1.7
1,754,533	-		PFLU_RS07880	0.21	-0.8
1,754,533	-		PFLU_RS07880	0.21	+0.3
1,754,533	-		PFLU_RS07880	0.21	+1.7
1,754,543	-		PFLU_RS07880	0.23	+0.1
1,754,547	+		PFLU_RS07880	0.24	+1.0
1,754,547	+		PFLU_RS07880	0.24	-0.9
1,754,548	-		PFLU_RS07880	0.24	+1.1
1,754,574	+		PFLU_RS07880	0.28	+0.7
1,754,575	-		PFLU_RS07880	0.28	+0.5
1,754,663	-		PFLU_RS07880	0.41	-0.9
1,754,663	-		PFLU_RS07880	0.41	+0.1
1,754,663	-		PFLU_RS07880	0.41	-1.3
1,754,663	-		PFLU_RS07880	0.41	-1.2
1,754,664	+		PFLU_RS07880	0.41	-0.2
1,754,664	+		PFLU_RS07880	0.41	+0.3
1,754,664	+		PFLU_RS07880	0.41	+0.7
1,754,664	+		PFLU_RS07880	0.41	+2.4
1,754,666	+		PFLU_RS07880	0.42	+0.9
1,754,666	+		PFLU_RS07880	0.42	+0.1
1,754,666	+		PFLU_RS07880	0.42	-0.8
1,754,666	+		PFLU_RS07880	0.42	-0.4
1,754,666	+		PFLU_RS07880	0.42	-0.1
1,754,666	+		PFLU_RS07880	0.42	+0.0
1,754,666	+		PFLU_RS07880	0.42	-0.1
1,754,666	+		PFLU_RS07880	0.42	-0.9
1,754,666	+		PFLU_RS07880	0.42	+1.6
1,754,666	+		PFLU_RS07880	0.42	+0.3
1,754,666	+		PFLU_RS07880	0.42	+2.3
1,754,666	+		PFLU_RS07880	0.42	+1.3
1,754,666	+		PFLU_RS07880	0.42	-0.3
1,754,666	+		PFLU_RS07880	0.42	+0.2
1,754,667	-		PFLU_RS07880	0.42	-2.3
1,754,667	-		PFLU_RS07880	0.42	-0.1
1,754,667	-		PFLU_RS07880	0.42	+0.8
1,754,667	-		PFLU_RS07880	0.42	+1.7
1,754,667	-		PFLU_RS07880	0.42	-0.1
1,754,667	-		PFLU_RS07880	0.42	-0.6
1,754,667	-		PFLU_RS07880	0.42	+4.0
1,754,667	-		PFLU_RS07880	0.42	+0.0
1,754,667	-		PFLU_RS07880	0.42	+1.8
1,754,667	-		PFLU_RS07880	0.42	+1.1
1,754,667	-		PFLU_RS07880	0.42	-0.5
1,754,667	-		PFLU_RS07880	0.42	+1.7
1,754,667	-		PFLU_RS07880	0.42	+1.7
1,754,667	-		PFLU_RS07880	0.42	+1.2
1,754,667	-		PFLU_RS07880	0.42	+0.1
1,754,758	-		PFLU_RS07880	0.56	+0.3
1,754,767	+		PFLU_RS07880	0.57	-0.1
1,754,768	-		PFLU_RS07880	0.57	+1.7
1,754,768	-		PFLU_RS07880	0.57	+1.2
1,754,768	-		PFLU_RS07880	0.57	+1.5
1,754,768	-		PFLU_RS07880	0.57	+0.3
1,754,777	+		PFLU_RS07880	0.59	+1.1
1,754,777	+		PFLU_RS07880	0.59	-0.2
1,754,778	-		PFLU_RS07880	0.59	+0.8
1,754,778	-		PFLU_RS07880	0.59	+1.2
1,754,843	+		PFLU_RS07880	0.69	+0.8
1,754,843	+		PFLU_RS07880	0.69	-0.6
1,754,843	+		PFLU_RS07880	0.69	+0.1
1,754,844	-		PFLU_RS07880	0.69	+0.5
1,754,845	+		PFLU_RS07880	0.69	+2.4
1,754,845	+		PFLU_RS07880	0.69	+0.8
1,754,845	+		PFLU_RS07880	0.69	+0.6
1,754,845	+		PFLU_RS07880	0.69	+0.7
1,754,845	+		PFLU_RS07880	0.69	+0.9
1,754,846	-		PFLU_RS07880	0.69	+1.7
1,754,846	-		PFLU_RS07880	0.69	+0.4
1,754,846	-		PFLU_RS07880	0.69	+2.3
1,754,846	-		PFLU_RS07880	0.69	-1.6
1,754,846	-		PFLU_RS07880	0.69	+1.2
1,754,846	-		PFLU_RS07880	0.69	+0.0
1,754,846	-		PFLU_RS07880	0.69	+1.0
1,754,846	-		PFLU_RS07880	0.69	+1.3
1,754,846	-		PFLU_RS07880	0.69	-1.1
1,754,846	-		PFLU_RS07880	0.69	+0.1
1,754,846	-		PFLU_RS07880	0.69	-0.6
1,754,866	-		PFLU_RS07880	0.72	+1.0
1,754,866	-		PFLU_RS07880	0.72	+0.3
1,754,866	-		PFLU_RS07880	0.72	+1.3
1,754,873	+		PFLU_RS07880	0.73	-1.1
1,754,873	+		PFLU_RS07880	0.73	+1.3
1,754,873	+		PFLU_RS07880	0.73	-1.3
1,754,873	+		PFLU_RS07880	0.73	-0.3
1,754,874	-		PFLU_RS07880	0.73	-0.6
1,754,874	-		PFLU_RS07880	0.73	+1.3
1,754,874	-		PFLU_RS07880	0.73	-0.1
1,754,952	+		PFLU_RS07880	0.85	+0.4
1,754,959	+		PFLU_RS07880	0.86	+3.7
1,755,001	+				+2.3
1,755,001	+				+1.0
1,755,107	-				+1.1
1,755,112	+				+3.3
1,755,113	-				-0.4
1,755,113	-				-2.8
1,755,122	-				-2.3
1,755,143	+				+1.1
1,755,144	-				+0.1
1,755,144	-				-2.5
1,755,144	-				+0.7
1,755,144	-				-0.5
1,755,144	-				-0.3
1,755,144	-				-0.9
1,755,144	-				+0.8
1,755,144	-				-0.6
1,755,145	+				+0.4
1,755,165	+				-0.9
1,755,165	+				+1.4
1,755,165	+				+0.8
1,755,165	+				-0.8
1,755,166	-				-1.0
1,755,201	+				+0.5
1,755,201	+				+1.6
1,755,201	+				-0.4
1,755,202	-				-1.9
1,755,202	-				-1.1
1,755,202	-				-0.3
1,755,202	-				-0.5
1,755,213	+				+1.7
1,755,213	+				+1.4
1,755,238	+				+0.5
1,755,239	-				+0.0
1,755,239	-				+0.1
1,755,239	-				+0.2
1,755,276	+				+1.1
1,755,277	-				-1.5
1,755,277	-				+0.4
1,755,313	+				-1.2
1,755,314	-				+1.1
1,755,314	-				-0.6
1,755,314	-				-1.5
1,755,314	-				-0.4
1,755,315	+				-1.1
1,755,316	-				-1.1
1,755,316	-				-1.1
1,755,316	-				-0.3
1,755,316	-				-1.9
1,755,443	-		PFLU_RS07885	0.17	-1.3
1,755,443	-		PFLU_RS07885	0.17	-1.2
1,755,512	+		PFLU_RS07885	0.23	+0.2
1,755,513	-		PFLU_RS07885	0.23	-0.6
1,755,575	+		PFLU_RS07885	0.28	+1.7
1,755,575	+		PFLU_RS07885	0.28	-1.1
1,755,723	+		PFLU_RS07885	0.40	+1.6
1,755,723	+		PFLU_RS07885	0.40	+1.5
1,755,723	+		PFLU_RS07885	0.40	+0.8
1,755,724	-		PFLU_RS07885	0.41	+0.9
1,755,724	-		PFLU_RS07885	0.41	+1.1
1,756,044	-		PFLU_RS07885	0.68	-1.1