Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05660

Experiment: 4-Hydroxybenzoic Acid (C) 1.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid (C) 1.5 mM
1,276,255	+				+0.2
1,276,256	-				-0.9
1,276,264	-				-1.3
1,276,264	-				+1.2
1,276,264	-				+0.2
1,276,391	+				+0.7
1,276,391	+				+1.7
1,276,403	+				-2.4
1,276,403	+				-2.6
1,276,403	+				-1.5
1,276,403	+				-0.7
1,276,403	+				-1.9
1,276,403	+				-0.4
1,276,404	-				-1.5
1,276,404	-				-3.7
1,276,404	-				-1.5
1,276,404	-				-0.6
1,276,404	-				-1.9
1,276,404	-				-1.4
1,276,420	+				-1.7
1,276,420	+				-0.4
1,276,420	+				-1.3
1,276,420	+				-0.2
1,276,420	+				-1.3
1,276,420	+				-0.6
1,276,420	+				-0.3
1,276,420	+				-0.6
1,276,420	+				-0.9
1,276,420	+				-2.1
1,276,420	+				-2.1
1,276,420	+				-0.8
1,276,420	+				-1.6
1,276,420	+				-1.1
1,276,420	+				+0.2
1,276,420	+				-2.4
1,276,420	+				+0.6
1,276,420	+				-1.8
1,276,420	+				-1.1
1,276,421	-				-1.3
1,276,421	-				-1.3
1,276,421	-				-0.9
1,276,421	-				-0.9
1,276,421	-				-1.7
1,276,421	-				-1.2
1,276,421	-				-1.0
1,276,953	+		PFLU_RS05655	0.74	+0.0
1,276,953	+		PFLU_RS05655	0.74	-1.4
1,276,980	+		PFLU_RS05655	0.77	-1.6
1,276,981	-		PFLU_RS05655	0.77	-1.8
1,276,981	-		PFLU_RS05655	0.77	-1.4
1,276,981	-		PFLU_RS05655	0.77	-3.9
1,277,090	-				+1.7
1,277,098	-				-1.7
1,277,174	+				+0.0
1,277,174	+				-0.1
1,277,175	-				-1.7
1,277,219	+				+2.0
1,277,219	+				+1.0
1,277,219	+				+0.7
1,277,219	+				-0.3
1,277,219	+				+1.1
1,277,219	+				+1.7
1,277,219	+				+1.1
1,277,219	+				+2.3
1,277,220	-				-1.9
1,277,220	-				+0.4
1,277,220	-				-0.8
1,277,220	-				+1.7
1,277,220	-				-0.4
1,277,220	-				-0.1
1,277,220	-				-0.4
1,277,220	-				+0.1
1,277,220	-				-0.7
1,277,237	+				+2.1
1,277,237	+				+0.5
1,277,238	-				+0.1
1,277,238	-				+0.6
1,277,301	-				+0.7
1,277,301	-				+0.7
1,277,301	-				+1.0
1,277,414	+		PFLU_RS05660	0.12	+3.5
1,277,415	-		PFLU_RS05660	0.12	-0.5
1,277,415	-		PFLU_RS05660	0.12	-1.4
1,277,575	+		PFLU_RS05660	0.23	+0.7
1,277,575	+		PFLU_RS05660	0.23	+0.1
1,277,575	+		PFLU_RS05660	0.23	+0.4
1,277,575	+		PFLU_RS05660	0.23	+2.5
1,277,575	+		PFLU_RS05660	0.23	+1.1
1,277,575	+		PFLU_RS05660	0.23	+1.2
1,277,575	+		PFLU_RS05660	0.23	+1.1
1,277,575	+		PFLU_RS05660	0.23	-1.3
1,277,575	+		PFLU_RS05660	0.23	+2.4
1,277,576	-		PFLU_RS05660	0.23	-0.3
1,277,576	-		PFLU_RS05660	0.23	+1.1
1,277,576	-		PFLU_RS05660	0.23	+0.5
1,277,576	-		PFLU_RS05660	0.23	+2.9
1,277,576	-		PFLU_RS05660	0.23	-0.3
1,277,592	-		PFLU_RS05660	0.24	-1.4
1,277,635	+		PFLU_RS05660	0.26	+1.9
1,277,635	+		PFLU_RS05660	0.26	+3.5
1,277,635	+		PFLU_RS05660	0.26	+1.7
1,277,636	-		PFLU_RS05660	0.27	+2.7
1,277,636	-		PFLU_RS05660	0.27	+2.1
1,277,636	-		PFLU_RS05660	0.27	+1.1
1,277,672	+		PFLU_RS05660	0.29	+0.9
1,277,684	+		PFLU_RS05660	0.30	+1.7
1,277,720	+		PFLU_RS05660	0.32	+0.5
1,277,720	+		PFLU_RS05660	0.32	+1.5
1,277,720	+		PFLU_RS05660	0.32	+0.4
1,277,720	+		PFLU_RS05660	0.32	+0.9
1,277,720	+		PFLU_RS05660	0.32	+0.2
1,277,720	+		PFLU_RS05660	0.32	+1.1
1,277,721	-		PFLU_RS05660	0.32	-0.9
1,277,721	-		PFLU_RS05660	0.32	+0.7
1,277,721	-		PFLU_RS05660	0.32	-0.6
1,277,756	+		PFLU_RS05660	0.35	+1.9
1,277,809	+		PFLU_RS05660	0.38	-0.4
1,277,809	+		PFLU_RS05660	0.38	+1.3
1,277,809	+		PFLU_RS05660	0.38	+0.1
1,277,809	+		PFLU_RS05660	0.38	+0.5
1,277,809	+		PFLU_RS05660	0.38	+1.4
1,277,809	+		PFLU_RS05660	0.38	+0.2
1,277,809	+		PFLU_RS05660	0.38	+1.4
1,277,810	-		PFLU_RS05660	0.38	-0.1
1,277,810	-		PFLU_RS05660	0.38	+1.4
1,277,830	+		PFLU_RS05660	0.39	+0.5
1,277,830	+		PFLU_RS05660	0.39	+1.7
1,277,831	-		PFLU_RS05660	0.40	+2.4
1,277,850	-		PFLU_RS05660	0.41	+1.1
1,277,954	+		PFLU_RS05660	0.48	+0.1
1,277,954	+		PFLU_RS05660	0.48	+0.7
1,277,954	+		PFLU_RS05660	0.48	+1.0
1,277,954	+		PFLU_RS05660	0.48	+1.7
1,277,954	+		PFLU_RS05660	0.48	+2.1
1,277,954	+		PFLU_RS05660	0.48	-0.0
1,277,954	+		PFLU_RS05660	0.48	+0.6
1,277,955	-		PFLU_RS05660	0.48	+0.6
1,277,955	-		PFLU_RS05660	0.48	+1.4
1,277,955	-		PFLU_RS05660	0.48	+0.7
1,277,955	-		PFLU_RS05660	0.48	+1.1
1,277,955	-		PFLU_RS05660	0.48	+2.7
1,277,955	-		PFLU_RS05660	0.48	+1.5
1,278,052	-		PFLU_RS05660	0.54	+0.1
1,278,052	-		PFLU_RS05660	0.54	+0.1
1,278,052	-		PFLU_RS05660	0.54	+1.6
1,278,052	-		PFLU_RS05660	0.54	+0.4
1,278,059	+		PFLU_RS05660	0.55	+0.1
1,278,059	+		PFLU_RS05660	0.55	+2.3
1,278,059	+		PFLU_RS05660	0.55	+0.3
1,278,059	+		PFLU_RS05660	0.55	+1.0
1,278,059	+		PFLU_RS05660	0.55	+1.7
1,278,060	-		PFLU_RS05660	0.55	-0.7
1,278,060	-		PFLU_RS05660	0.55	+1.8
1,278,060	-		PFLU_RS05660	0.55	+0.9
1,278,060	-		PFLU_RS05660	0.55	+1.7
1,278,103	+		PFLU_RS05660	0.58	-0.3
1,278,103	+		PFLU_RS05660	0.58	+3.3
1,278,182	+		PFLU_RS05660	0.63	+2.2
1,278,182	+		PFLU_RS05660	0.63	+0.5
1,278,182	+		PFLU_RS05660	0.63	+2.7
1,278,182	+		PFLU_RS05660	0.63	+1.7
1,278,183	-		PFLU_RS05660	0.63	+0.3
1,278,183	-		PFLU_RS05660	0.63	+1.1
1,278,183	-		PFLU_RS05660	0.63	+3.3
1,278,183	-		PFLU_RS05660	0.63	+1.9
1,278,326	+		PFLU_RS05660	0.72	+1.7
1,278,326	+		PFLU_RS05660	0.72	+1.7
1,278,326	+		PFLU_RS05660	0.72	+1.7
1,278,326	+		PFLU_RS05660	0.72	+1.2
1,278,326	+		PFLU_RS05660	0.72	+1.3
1,278,326	+		PFLU_RS05660	0.72	+2.7
1,278,326	+		PFLU_RS05660	0.72	-0.1
1,278,326	+		PFLU_RS05660	0.72	+1.7
1,278,326	+		PFLU_RS05660	0.72	+0.6
1,278,326	+		PFLU_RS05660	0.72	+1.1
1,278,326	+		PFLU_RS05660	0.72	+1.1
1,278,327	-		PFLU_RS05660	0.72	+0.4
1,278,327	-		PFLU_RS05660	0.72	+2.7
1,278,327	-		PFLU_RS05660	0.72	-0.1
1,278,362	+		PFLU_RS05660	0.75	+0.9
1,278,362	+		PFLU_RS05660	0.75	+0.1
1,278,362	+		PFLU_RS05660	0.75	+2.1
1,278,362	+		PFLU_RS05660	0.75	+1.4
1,278,362	+		PFLU_RS05660	0.75	-0.1
1,278,362	+		PFLU_RS05660	0.75	-1.4
1,278,362	+		PFLU_RS05660	0.75	+3.9
1,278,362	+		PFLU_RS05660	0.75	+1.7
1,278,362	+		PFLU_RS05660	0.75	+1.0
1,278,362	+		PFLU_RS05660	0.75	+0.9
1,278,362	+		PFLU_RS05660	0.75	-0.3
1,278,362	+		PFLU_RS05660	0.75	-1.1
1,278,362	+		PFLU_RS05660	0.75	+2.5
1,278,362	+		PFLU_RS05660	0.75	+4.0
1,278,362	+		PFLU_RS05660	0.75	+1.7
1,278,362	+		PFLU_RS05660	0.75	+1.3
1,278,362	+		PFLU_RS05660	0.75	-0.1
1,278,362	+		PFLU_RS05660	0.75	+3.3
1,278,362	+		PFLU_RS05660	0.75	+0.3
1,278,362	+		PFLU_RS05660	0.75	+1.7
1,278,362	+		PFLU_RS05660	0.75	+0.6
1,278,363	-		PFLU_RS05660	0.75	-0.8
1,278,363	-		PFLU_RS05660	0.75	-0.6
1,278,363	-		PFLU_RS05660	0.75	+4.3
1,278,363	-		PFLU_RS05660	0.75	+2.3
1,278,363	-		PFLU_RS05660	0.75	-0.2
1,278,363	-		PFLU_RS05660	0.75	+1.1
1,278,363	-		PFLU_RS05660	0.75	+0.1
1,278,363	-		PFLU_RS05660	0.75	+0.3
1,278,363	-		PFLU_RS05660	0.75	+2.7
1,278,363	-		PFLU_RS05660	0.75	+3.3
1,278,363	-		PFLU_RS05660	0.75	+0.0
1,278,363	-		PFLU_RS05660	0.75	+2.5
1,278,363	-		PFLU_RS05660	0.75	+0.8
1,278,363	-		PFLU_RS05660	0.75	-0.1
1,278,363	-		PFLU_RS05660	0.75	+0.0
1,278,363	-		PFLU_RS05660	0.75	+0.7
1,278,363	-		PFLU_RS05660	0.75	+0.6
1,278,363	-		PFLU_RS05660	0.75	+0.4
1,278,363	-		PFLU_RS05660	0.75	+0.4
1,278,363	-		PFLU_RS05660	0.75	+2.5
1,278,363	-		PFLU_RS05660	0.75	+0.7
1,278,363	-		PFLU_RS05660	0.75	+0.1
1,278,363	-		PFLU_RS05660	0.75	-0.3
1,278,363	-		PFLU_RS05660	0.75	+0.4
1,278,437	+		PFLU_RS05660	0.80	+1.1
1,278,437	+		PFLU_RS05660	0.80	+1.4
1,278,437	+		PFLU_RS05660	0.80	+2.9
1,278,437	+		PFLU_RS05660	0.80	-1.1
1,278,437	+		PFLU_RS05660	0.80	+1.7
1,278,437	+		PFLU_RS05660	0.80	-0.1
1,278,437	+		PFLU_RS05660	0.80	+0.1
1,278,437	+		PFLU_RS05660	0.80	-0.4
1,278,437	+		PFLU_RS05660	0.80	+1.7
1,278,438	-		PFLU_RS05660	0.80	+0.2
1,278,438	-		PFLU_RS05660	0.80	+1.7
1,278,438	-		PFLU_RS05660	0.80	+1.2
1,278,438	-		PFLU_RS05660	0.80	+0.3
1,278,438	-		PFLU_RS05660	0.80	+2.0
1,278,438	-		PFLU_RS05660	0.80	+0.6
1,278,438	-		PFLU_RS05660	0.80	+1.9
1,278,469	+		PFLU_RS05660	0.82	-0.9
1,278,469	+		PFLU_RS05660	0.82	+0.1
1,278,469	+		PFLU_RS05660	0.82	+1.5
1,278,470	-		PFLU_RS05660	0.82	+3.3
1,278,470	-		PFLU_RS05660	0.82	+0.9
1,278,470	-		PFLU_RS05660	0.82	+2.1
1,278,470	-		PFLU_RS05660	0.82	+0.8
1,278,470	-		PFLU_RS05660	0.82	+0.8
1,278,470	-		PFLU_RS05660	0.82	+0.1
1,278,716	+				+1.7
1,278,716	+				+0.1
1,278,716	+				+1.0
1,278,716	+				+0.1
1,278,716	+				-0.1
1,278,716	+				+0.7
1,278,716	+				-0.9
1,278,716	+				+1.7
1,278,716	+				-0.6
1,278,716	+				+0.7
1,278,716	+				+3.3
1,278,716	+				+0.9
1,278,716	+				-0.3
1,278,716	+				+2.1
1,278,716	+				+2.2
1,278,716	+				+0.1
1,278,716	+				+0.1
1,278,716	+				+1.1
1,278,716	+				-0.3
1,278,716	+				+4.7
1,278,716	+				+1.0
1,278,717	-				+0.7
1,278,717	-				+0.1
1,278,717	-				+3.0
1,278,717	-				-0.9
1,278,717	-				-1.4
1,278,717	-				+0.3
1,278,717	-				+0.1
1,278,717	-				+1.3
1,278,717	-				+0.1
1,278,717	-				+0.5
1,278,717	-				+0.5
1,278,717	-				+1.2
1,278,717	-				+1.7
1,278,717	-				+2.0
1,278,717	-				+0.9
1,278,717	-				+1.6
1,278,717	-				-0.4
1,278,717	-				+1.0
1,278,717	-				+0.7
1,278,717	-				-0.3
1,278,717	-				-0.3
1,278,723	+				-0.1
1,278,723	+				+1.2
1,278,723	+				+0.7
1,278,723	+				+1.4
1,278,724	-				+0.4
1,278,724	-				+1.4
1,278,724	-				+2.1
1,278,724	-				+0.7
1,278,754	-				-0.4
1,278,754	-				-0.2
1,278,764	+				+3.3
1,278,764	+				-0.1
1,278,765	-				+0.2
1,278,765	-				-0.9
1,278,765	-				+0.9
1,278,765	-				-1.4
1,278,772	+				-0.3
1,278,772	+				+1.9
1,278,772	+				+0.6
1,278,772	+				-0.1
1,278,772	+				+0.9
1,278,773	-				-0.3
1,278,773	-				-1.9
1,278,773	-				-0.9
1,278,773	-				-0.6
1,278,773	-				-1.6
1,278,773	-				-1.6
1,278,773	-				-0.3
1,278,831	+				+1.3
1,278,831	+				+0.7
1,278,832	-				-0.6
1,278,832	-				-2.3
1,278,874	+				+0.7
1,278,874	+				+0.5
1,278,874	+				+0.1
1,278,874	+				+1.2
1,278,874	+				+1.7
1,278,874	+				+1.1
1,278,874	+				+1.7
1,278,874	+				+1.7
1,278,874	+				+1.7
1,278,874	+				-0.1
1,278,874	+				+2.3
1,278,874	+				-2.2
1,278,874	+				+3.0
1,278,875	-				-0.4
1,278,875	-				-2.9
1,278,875	-				+1.7
1,278,875	-				+3.3
1,278,875	-				+0.3
1,278,875	-				-1.0
1,278,875	-				-1.3
1,278,875	-				-0.6
1,278,875	-				-1.3
1,278,875	-				-1.7
1,278,875	-				-1.1
1,278,875	-				-2.1
1,278,875	-				+0.1
1,278,875	-				-0.3
1,278,875	-				+1.7
1,278,876	+				+0.1
1,278,876	+				+1.5
1,278,876	+				+1.1
1,278,876	+				+1.7
1,278,876	+				+1.1
1,278,876	+				+1.7
1,278,876	+				+1.7
1,278,876	+				+1.3
1,278,877	-				-3.7
1,278,877	-				-1.1
1,278,877	-				-1.5
1,278,877	-				-0.5
1,278,877	-				-0.3
1,278,877	-				-0.6
1,278,877	-				-2.1
1,278,877	-				-1.3
1,278,977	+		PFLU_RS05665	0.18	+1.7
1,278,977	+		PFLU_RS05665	0.18	+1.7
1,278,977	+		PFLU_RS05665	0.18	+0.5
1,278,977	+		PFLU_RS05665	0.18	+0.9
1,278,977	+		PFLU_RS05665	0.18	+1.3
1,278,977	+		PFLU_RS05665	0.18	-0.3
1,278,977	+		PFLU_RS05665	0.18	+0.9
1,278,977	+		PFLU_RS05665	0.18	+1.7
1,278,977	+		PFLU_RS05665	0.18	-2.1
1,278,978	-		PFLU_RS05665	0.18	+1.1
1,278,978	-		PFLU_RS05665	0.18	+1.7
1,278,978	-		PFLU_RS05665	0.18	+0.1
1,278,978	-		PFLU_RS05665	0.18	+0.1
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1,279,596	+				+1.1
1,279,597	-				+2.1