Experiment: 4-Hydroxybenzoic Acid (C) 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02760 and PFLU_RS02765 are separated by 181 nucleotides PFLU_RS02765 and PFLU_RS02770 are separated by 22 nucleotides PFLU_RS02770 and PFLU_RS02775 are separated by 12 nucleotides
PFLU_RS02760: PFLU_RS02760 - N-acylglucosamine 2-epimerase, at 635,538 to 636,656
_RS02760
PFLU_RS02765: PFLU_RS02765 - HupE/UreJ family protein, at 636,838 to 637,410
_RS02765
PFLU_RS02770: PFLU_RS02770 - urease accessory protein UreG, at 637,433 to 638,047
_RS02770
PFLU_RS02775: PFLU_RS02775 - urease accessory protein UreF, at 638,060 to 638,734
_RS02775
Position (kb) 636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 635.846 kb on + strand, within PFLU_RS02760 at 635.847 kb on - strand, within PFLU_RS02760 at 635.847 kb on - strand, within PFLU_RS02760 at 635.847 kb on - strand, within PFLU_RS02760 at 635.894 kb on + strand, within PFLU_RS02760 at 635.964 kb on - strand, within PFLU_RS02760 at 636.272 kb on - strand, within PFLU_RS02760 at 636.307 kb on + strand, within PFLU_RS02760 at 636.307 kb on + strand, within PFLU_RS02760 at 636.308 kb on - strand, within PFLU_RS02760 at 636.308 kb on - strand, within PFLU_RS02760 at 636.308 kb on - strand, within PFLU_RS02760 at 636.308 kb on - strand, within PFLU_RS02760 at 636.308 kb on - strand, within PFLU_RS02760 at 636.308 kb on - strand, within PFLU_RS02760 at 636.308 kb on - strand, within PFLU_RS02760 at 636.355 kb on + strand, within PFLU_RS02760 at 636.355 kb on + strand, within PFLU_RS02760 at 636.355 kb on + strand, within PFLU_RS02760 at 636.355 kb on + strand, within PFLU_RS02760 at 636.355 kb on + strand, within PFLU_RS02760 at 636.356 kb on - strand, within PFLU_RS02760 at 636.356 kb on - strand, within PFLU_RS02760 at 636.472 kb on + strand, within PFLU_RS02760 at 636.472 kb on + strand, within PFLU_RS02760 at 636.472 kb on + strand, within PFLU_RS02760 at 636.472 kb on + strand, within PFLU_RS02760 at 636.472 kb on + strand, within PFLU_RS02760 at 636.472 kb on + strand, within PFLU_RS02760 at 636.472 kb on + strand, within PFLU_RS02760 at 636.472 kb on + strand, within PFLU_RS02760 at 636.472 kb on + strand, within PFLU_RS02760 at 636.473 kb on - strand, within PFLU_RS02760 at 636.473 kb on - strand, within PFLU_RS02760 at 636.473 kb on - strand, within PFLU_RS02760 at 636.473 kb on - strand, within PFLU_RS02760 at 636.473 kb on - strand, within PFLU_RS02760 at 636.473 kb on - strand, within PFLU_RS02760 at 636.473 kb on - strand, within PFLU_RS02760 at 636.473 kb on - strand, within PFLU_RS02760 at 636.473 kb on - strand, within PFLU_RS02760 at 636.473 kb on - strand, within PFLU_RS02760 at 636.618 kb on + strand at 636.683 kb on + strand at 636.684 kb on - strand at 636.684 kb on - strand at 636.684 kb on - strand at 636.684 kb on - strand at 636.684 kb on - strand at 636.696 kb on + strand at 636.696 kb on + strand at 636.696 kb on + strand at 636.696 kb on + strand at 636.696 kb on + strand at 636.697 kb on - strand at 636.697 kb on - strand at 636.697 kb on - strand at 636.766 kb on + strand at 636.766 kb on + strand at 636.767 kb on - strand at 636.777 kb on + strand at 636.777 kb on + strand at 636.777 kb on + strand at 636.777 kb on + strand at 636.777 kb on + strand at 636.777 kb on + strand at 636.777 kb on + strand at 636.777 kb on + strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.778 kb on - strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.780 kb on - strand at 636.780 kb on - strand at 636.780 kb on - strand at 636.780 kb on - strand at 636.780 kb on - strand at 636.780 kb on - strand at 636.780 kb on - strand at 636.780 kb on - strand at 636.780 kb on - strand at 636.983 kb on + strand, within PFLU_RS02765 at 636.984 kb on - strand, within PFLU_RS02765 at 636.984 kb on - strand, within PFLU_RS02765 at 636.984 kb on - strand, within PFLU_RS02765 at 637.424 kb on - strand at 637.526 kb on - strand, within PFLU_RS02770 at 637.600 kb on + strand, within PFLU_RS02770 at 637.600 kb on + strand, within PFLU_RS02770 at 637.600 kb on + strand, within PFLU_RS02770 at 637.600 kb on + strand, within PFLU_RS02770 at 637.600 kb on + strand, within PFLU_RS02770 at 637.600 kb on + strand, within PFLU_RS02770 at 637.600 kb on + strand, within PFLU_RS02770 at 637.600 kb on + strand, within PFLU_RS02770 at 637.600 kb on + strand, within PFLU_RS02770 at 637.601 kb on - strand, within PFLU_RS02770 at 637.601 kb on - strand, within PFLU_RS02770 at 637.601 kb on - strand, within PFLU_RS02770 at 637.601 kb on - strand, within PFLU_RS02770 at 637.601 kb on - strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.683 kb on + strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.684 kb on - strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.920 kb on + strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.921 kb on - strand, within PFLU_RS02770 at 637.950 kb on + strand, within PFLU_RS02770 at 637.951 kb on - strand, within PFLU_RS02770 at 637.951 kb on - strand, within PFLU_RS02770 at 638.061 kb on + strand at 638.061 kb on + strand at 638.062 kb on - strand at 638.062 kb on - strand at 638.062 kb on - strand at 638.082 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) 1.5 mM remove 635,846 + PFLU_RS02760 0.28 -0.3 635,847 - PFLU_RS02760 0.28 +0.7 635,847 - PFLU_RS02760 0.28 +1.3 635,847 - PFLU_RS02760 0.28 +1.0 635,894 + PFLU_RS02760 0.32 +0.4 635,964 - PFLU_RS02760 0.38 +0.3 636,272 - PFLU_RS02760 0.66 +0.1 636,307 + PFLU_RS02760 0.69 +1.1 636,307 + PFLU_RS02760 0.69 +0.1 636,308 - PFLU_RS02760 0.69 +1.8 636,308 - PFLU_RS02760 0.69 -0.3 636,308 - PFLU_RS02760 0.69 +0.7 636,308 - PFLU_RS02760 0.69 -1.1 636,308 - PFLU_RS02760 0.69 +0.4 636,308 - PFLU_RS02760 0.69 +0.8 636,308 - PFLU_RS02760 0.69 +0.0 636,355 + PFLU_RS02760 0.73 +0.3 636,355 + PFLU_RS02760 0.73 +0.6 636,355 + PFLU_RS02760 0.73 +1.9 636,355 + PFLU_RS02760 0.73 -0.1 636,355 + PFLU_RS02760 0.73 -0.6 636,356 - PFLU_RS02760 0.73 +0.3 636,356 - PFLU_RS02760 0.73 +0.4 636,472 + PFLU_RS02760 0.83 -0.1 636,472 + PFLU_RS02760 0.83 +0.2 636,472 + PFLU_RS02760 0.83 -1.1 636,472 + PFLU_RS02760 0.83 +0.5 636,472 + PFLU_RS02760 0.83 -1.0 636,472 + PFLU_RS02760 0.83 +0.9 636,472 + PFLU_RS02760 0.83 -0.4 636,472 + PFLU_RS02760 0.83 -0.2 636,472 + PFLU_RS02760 0.83 +0.8 636,473 - PFLU_RS02760 0.84 -0.1 636,473 - PFLU_RS02760 0.84 -0.2 636,473 - PFLU_RS02760 0.84 -1.2 636,473 - PFLU_RS02760 0.84 +1.2 636,473 - PFLU_RS02760 0.84 -0.8 636,473 - PFLU_RS02760 0.84 -0.7 636,473 - PFLU_RS02760 0.84 +0.1 636,473 - PFLU_RS02760 0.84 +1.1 636,473 - PFLU_RS02760 0.84 +0.6 636,473 - PFLU_RS02760 0.84 +1.8 636,618 + -1.0 636,683 + -0.2 636,684 - -0.4 636,684 - +0.5 636,684 - -3.3 636,684 - -1.1 636,684 - +0.0 636,696 + -0.9 636,696 + +0.4 636,696 + +0.5 636,696 + -1.4 636,696 + -1.0 636,697 - +0.0 636,697 - -1.6 636,697 - -1.7 636,766 + -0.2 636,766 + +0.7 636,767 - +2.2 636,777 + -0.1 636,777 + +0.1 636,777 + +1.6 636,777 + -0.6 636,777 + -0.5 636,777 + -0.5 636,777 + -0.4 636,777 + -1.0 636,778 - -0.5 636,778 - -1.4 636,778 - +0.1 636,778 - +0.4 636,778 - +1.0 636,778 - -1.0 636,778 - -0.8 636,778 - -1.2 636,778 - +0.1 636,778 - -0.3 636,778 - +0.2 636,778 - +2.4 636,779 + +2.8 636,779 + -0.5 636,779 + -0.2 636,779 + +0.1 636,779 + -1.4 636,779 + +1.1 636,779 + -0.5 636,779 + -2.0 636,779 + +1.4 636,779 + -0.7 636,780 - +0.4 636,780 - +2.3 636,780 - -0.8 636,780 - +0.1 636,780 - -0.4 636,780 - +1.4 636,780 - -0.5 636,780 - +2.4 636,780 - +0.1 636,983 + PFLU_RS02765 0.25 +0.4 636,984 - PFLU_RS02765 0.25 +0.8 636,984 - PFLU_RS02765 0.25 +0.1 636,984 - PFLU_RS02765 0.25 +1.1 637,424 - -0.7 637,526 - PFLU_RS02770 0.15 +0.6 637,600 + PFLU_RS02770 0.27 -0.9 637,600 + PFLU_RS02770 0.27 -1.0 637,600 + PFLU_RS02770 0.27 -0.6 637,600 + PFLU_RS02770 0.27 +1.8 637,600 + PFLU_RS02770 0.27 +0.2 637,600 + PFLU_RS02770 0.27 +1.8 637,600 + PFLU_RS02770 0.27 -0.3 637,600 + PFLU_RS02770 0.27 +0.0 637,600 + PFLU_RS02770 0.27 +0.2 637,601 - PFLU_RS02770 0.27 +1.8 637,601 - PFLU_RS02770 0.27 -0.7 637,601 - PFLU_RS02770 0.27 -0.2 637,601 - PFLU_RS02770 0.27 +0.1 637,601 - PFLU_RS02770 0.27 -0.5 637,683 + PFLU_RS02770 0.41 +0.2 637,683 + PFLU_RS02770 0.41 -0.3 637,683 + PFLU_RS02770 0.41 +0.2 637,683 + PFLU_RS02770 0.41 -1.4 637,683 + PFLU_RS02770 0.41 -0.1 637,683 + PFLU_RS02770 0.41 -0.1 637,683 + PFLU_RS02770 0.41 -0.8 637,683 + PFLU_RS02770 0.41 -0.5 637,683 + PFLU_RS02770 0.41 -1.6 637,683 + PFLU_RS02770 0.41 -0.3 637,683 + PFLU_RS02770 0.41 +0.3 637,683 + PFLU_RS02770 0.41 -0.6 637,683 + PFLU_RS02770 0.41 +1.7 637,683 + PFLU_RS02770 0.41 +0.4 637,683 + PFLU_RS02770 0.41 -0.3 637,683 + PFLU_RS02770 0.41 -0.3 637,684 - PFLU_RS02770 0.41 +0.0 637,684 - PFLU_RS02770 0.41 +0.4 637,684 - PFLU_RS02770 0.41 +0.8 637,684 - PFLU_RS02770 0.41 -0.2 637,684 - PFLU_RS02770 0.41 -0.2 637,684 - PFLU_RS02770 0.41 -0.1 637,684 - PFLU_RS02770 0.41 +0.8 637,684 - PFLU_RS02770 0.41 +0.7 637,684 - PFLU_RS02770 0.41 -1.9 637,684 - PFLU_RS02770 0.41 -0.6 637,684 - PFLU_RS02770 0.41 -0.0 637,684 - PFLU_RS02770 0.41 -0.2 637,684 - PFLU_RS02770 0.41 +2.8 637,684 - PFLU_RS02770 0.41 +1.0 637,684 - PFLU_RS02770 0.41 +0.0 637,684 - PFLU_RS02770 0.41 -0.9 637,684 - PFLU_RS02770 0.41 +0.4 637,920 + PFLU_RS02770 0.79 +1.2 637,920 + PFLU_RS02770 0.79 +1.4 637,920 + PFLU_RS02770 0.79 -0.5 637,920 + PFLU_RS02770 0.79 -0.9 637,920 + PFLU_RS02770 0.79 +0.2 637,920 + PFLU_RS02770 0.79 -1.8 637,920 + PFLU_RS02770 0.79 -0.1 637,920 + PFLU_RS02770 0.79 -0.7 637,920 + PFLU_RS02770 0.79 +0.8 637,920 + PFLU_RS02770 0.79 -0.4 637,920 + PFLU_RS02770 0.79 +0.0 637,920 + PFLU_RS02770 0.79 +0.6 637,920 + PFLU_RS02770 0.79 +0.4 637,920 + PFLU_RS02770 0.79 +0.7 637,920 + PFLU_RS02770 0.79 -0.1 637,920 + PFLU_RS02770 0.79 -0.8 637,920 + PFLU_RS02770 0.79 -0.4 637,920 + PFLU_RS02770 0.79 -0.3 637,920 + PFLU_RS02770 0.79 -1.5 637,920 + PFLU_RS02770 0.79 +0.7 637,920 + PFLU_RS02770 0.79 -1.2 637,920 + PFLU_RS02770 0.79 -0.2 637,920 + PFLU_RS02770 0.79 -1.0 637,920 + PFLU_RS02770 0.79 -0.0 637,920 + PFLU_RS02770 0.79 +1.0 637,920 + PFLU_RS02770 0.79 +0.8 637,920 + PFLU_RS02770 0.79 +0.2 637,920 + PFLU_RS02770 0.79 +0.2 637,920 + PFLU_RS02770 0.79 +0.6 637,920 + PFLU_RS02770 0.79 -0.6 637,920 + PFLU_RS02770 0.79 +0.0 637,921 - PFLU_RS02770 0.79 +0.8 637,921 - PFLU_RS02770 0.79 -0.1 637,921 - PFLU_RS02770 0.79 +0.1 637,921 - PFLU_RS02770 0.79 +0.5 637,921 - PFLU_RS02770 0.79 +0.1 637,921 - PFLU_RS02770 0.79 -0.2 637,921 - PFLU_RS02770 0.79 -0.8 637,921 - PFLU_RS02770 0.79 -0.5 637,921 - PFLU_RS02770 0.79 -1.6 637,921 - PFLU_RS02770 0.79 -0.5 637,921 - PFLU_RS02770 0.79 +1.2 637,921 - PFLU_RS02770 0.79 +0.9 637,921 - PFLU_RS02770 0.79 +0.7 637,921 - PFLU_RS02770 0.79 -1.0 637,921 - PFLU_RS02770 0.79 +1.3 637,921 - PFLU_RS02770 0.79 -0.9 637,921 - PFLU_RS02770 0.79 -1.1 637,921 - PFLU_RS02770 0.79 -3.0 637,921 - PFLU_RS02770 0.79 -1.3 637,921 - PFLU_RS02770 0.79 -1.5 637,921 - PFLU_RS02770 0.79 -0.4 637,921 - PFLU_RS02770 0.79 -0.4 637,921 - PFLU_RS02770 0.79 +2.4 637,921 - PFLU_RS02770 0.79 -0.3 637,921 - PFLU_RS02770 0.79 +0.5 637,921 - PFLU_RS02770 0.79 +0.6 637,921 - PFLU_RS02770 0.79 -0.8 637,921 - PFLU_RS02770 0.79 -0.3 637,921 - PFLU_RS02770 0.79 +0.7 637,950 + PFLU_RS02770 0.84 +0.1 637,951 - PFLU_RS02770 0.84 +0.5 637,951 - PFLU_RS02770 0.84 -0.4 638,061 + +0.1 638,061 + -0.4 638,062 - -0.2 638,062 - -0.7 638,062 - +1.8 638,082 + -1.8
Or see this region's nucleotide sequence