Experiment: 4-Hydroxybenzoic Acid (C) 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02020 and PFLU_RS02025 are separated by 4 nucleotides PFLU_RS02025 and PFLU_RS02030 are separated by 125 nucleotides
PFLU_RS02020: PFLU_RS02020 - type IV pilus secretin PilQ family protein, at 453,657 to 454,982
_RS02020
PFLU_RS02025: PFLU_RS02025 - shikimate kinase AroK, at 454,987 to 455,505
_RS02025
PFLU_RS02030: PFLU_RS02030 - 3-dehydroquinate synthase, at 455,631 to 456,731
_RS02030
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 454.050 kb on + strand, within PFLU_RS02020 at 454.051 kb on - strand, within PFLU_RS02020 at 454.051 kb on - strand, within PFLU_RS02020 at 454.051 kb on - strand, within PFLU_RS02020 at 454.051 kb on - strand, within PFLU_RS02020 at 454.051 kb on - strand, within PFLU_RS02020 at 454.165 kb on - strand, within PFLU_RS02020 at 454.272 kb on + strand, within PFLU_RS02020 at 454.273 kb on - strand, within PFLU_RS02020 at 454.320 kb on - strand, within PFLU_RS02020 at 454.445 kb on + strand, within PFLU_RS02020 at 454.445 kb on + strand, within PFLU_RS02020 at 454.445 kb on + strand, within PFLU_RS02020 at 454.446 kb on - strand, within PFLU_RS02020 at 454.446 kb on - strand, within PFLU_RS02020 at 454.446 kb on - strand, within PFLU_RS02020 at 454.717 kb on - strand, within PFLU_RS02020 at 454.717 kb on - strand, within PFLU_RS02020 at 454.717 kb on - strand, within PFLU_RS02020 at 454.841 kb on - strand, within PFLU_RS02020 at 454.841 kb on - strand, within PFLU_RS02020 at 454.844 kb on + strand, within PFLU_RS02020 at 454.844 kb on + strand, within PFLU_RS02020 at 454.844 kb on + strand, within PFLU_RS02020 at 454.844 kb on + strand, within PFLU_RS02020 at 454.844 kb on + strand, within PFLU_RS02020 at 454.844 kb on + strand, within PFLU_RS02020 at 454.844 kb on + strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.845 kb on - strand, within PFLU_RS02020 at 454.872 kb on + strand at 454.930 kb on + strand at 454.930 kb on + strand at 454.930 kb on + strand at 454.930 kb on + strand at 454.930 kb on + strand at 454.931 kb on - strand at 454.931 kb on - strand at 454.946 kb on + strand at 454.946 kb on + strand at 454.947 kb on - strand at 454.947 kb on - strand at 454.950 kb on - strand at 455.525 kb on + strand at 455.525 kb on + strand at 455.526 kb on - strand at 455.543 kb on - strand at 455.565 kb on - strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.609 kb on + strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.610 kb on - strand at 455.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) 1.5 mM remove 454,050 + PFLU_RS02020 0.30 +0.4 454,051 - PFLU_RS02020 0.30 +0.3 454,051 - PFLU_RS02020 0.30 +0.9 454,051 - PFLU_RS02020 0.30 +0.3 454,051 - PFLU_RS02020 0.30 +0.0 454,051 - PFLU_RS02020 0.30 -0.6 454,165 - PFLU_RS02020 0.38 +1.3 454,272 + PFLU_RS02020 0.46 +0.5 454,273 - PFLU_RS02020 0.46 -1.7 454,320 - PFLU_RS02020 0.50 +0.2 454,445 + PFLU_RS02020 0.59 +0.7 454,445 + PFLU_RS02020 0.59 -0.3 454,445 + PFLU_RS02020 0.59 -0.4 454,446 - PFLU_RS02020 0.60 +0.0 454,446 - PFLU_RS02020 0.60 +0.2 454,446 - PFLU_RS02020 0.60 +0.1 454,717 - PFLU_RS02020 0.80 +0.3 454,717 - PFLU_RS02020 0.80 +0.1 454,717 - PFLU_RS02020 0.80 -0.8 454,841 - PFLU_RS02020 0.89 +0.8 454,841 - PFLU_RS02020 0.89 -0.7 454,844 + PFLU_RS02020 0.90 -0.5 454,844 + PFLU_RS02020 0.90 +0.6 454,844 + PFLU_RS02020 0.90 +1.3 454,844 + PFLU_RS02020 0.90 -0.0 454,844 + PFLU_RS02020 0.90 -0.1 454,844 + PFLU_RS02020 0.90 -2.2 454,844 + PFLU_RS02020 0.90 +0.3 454,845 - PFLU_RS02020 0.90 +0.2 454,845 - PFLU_RS02020 0.90 -1.1 454,845 - PFLU_RS02020 0.90 +0.9 454,845 - PFLU_RS02020 0.90 +0.3 454,845 - PFLU_RS02020 0.90 -0.6 454,845 - PFLU_RS02020 0.90 -0.2 454,845 - PFLU_RS02020 0.90 +1.0 454,845 - PFLU_RS02020 0.90 -0.9 454,845 - PFLU_RS02020 0.90 +0.7 454,845 - PFLU_RS02020 0.90 +1.0 454,845 - PFLU_RS02020 0.90 +0.1 454,872 + -1.1 454,930 + -1.8 454,930 + -1.0 454,930 + -0.8 454,930 + -0.6 454,930 + -0.3 454,931 - +1.9 454,931 - -0.5 454,946 + -0.8 454,946 + +0.2 454,947 - -0.7 454,947 - -0.3 454,950 - +1.9 455,525 + -0.0 455,525 + -0.0 455,526 - +0.4 455,543 - -1.0 455,565 - -1.8 455,609 + +0.1 455,609 + +3.2 455,609 + -1.7 455,609 + -1.1 455,609 + +1.0 455,609 + +1.9 455,609 + -1.3 455,609 + -1.6 455,609 + +1.1 455,609 + -0.1 455,609 + -1.7 455,609 + -1.4 455,609 + -0.5 455,609 + -0.7 455,609 + +0.3 455,609 + +0.4 455,609 + -1.0 455,609 + -0.3 455,609 + +0.7 455,609 + -1.7 455,609 + +0.2 455,609 + -0.3 455,609 + -0.1 455,609 + -0.7 455,609 + +0.9 455,610 - -0.5 455,610 - +0.9 455,610 - -0.9 455,610 - +1.3 455,610 - -1.1 455,610 - -0.1 455,610 - +0.3 455,610 - -0.1 455,610 - +1.9 455,610 - +0.9 455,610 - -1.6 455,610 - -0.7 455,610 - +1.9 455,610 - -1.3 455,642 + +1.6
Or see this region's nucleotide sequence