Experiment: L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0753 and Psest_0754 are separated by 88 nucleotides Psest_0754 and Psest_0755 are separated by 92 nucleotides Psest_0755 and Psest_0756 are separated by 94 nucleotides Psest_0756 and Psest_0757 are separated by 42 nucleotides
Psest_0753: Psest_0753 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 824,690 to 825,814
_0753
Psest_0754: Psest_0754 - Predicted transcriptional regulators, at 825,903 to 826,208
_0754
Psest_0755: Psest_0755 - Bacterial regulatory helix-turn-helix proteins, AraC family., at 826,301 to 827,098
_0755
Psest_0756: Psest_0756 - alkylhydroperoxidase AhpD family core domain, at 827,193 to 827,651
_0756
Psest_0757: Psest_0757 - hypothetical protein, at 827,694 to 828,167
_0757
Position (kb) 826
827
828 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 825.302 kb on + strand, within Psest_0753 at 825.334 kb on + strand, within Psest_0753 at 825.334 kb on + strand, within Psest_0753 at 825.434 kb on + strand, within Psest_0753 at 825.434 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.512 kb on + strand, within Psest_0753 at 825.516 kb on + strand, within Psest_0753 at 825.516 kb on + strand, within Psest_0753 at 825.516 kb on + strand, within Psest_0753 at 825.517 kb on - strand, within Psest_0753 at 825.517 kb on - strand, within Psest_0753 at 825.608 kb on + strand, within Psest_0753 at 825.608 kb on + strand, within Psest_0753 at 825.608 kb on + strand, within Psest_0753 at 825.609 kb on - strand, within Psest_0753 at 825.609 kb on - strand, within Psest_0753 at 825.620 kb on + strand, within Psest_0753 at 825.620 kb on + strand, within Psest_0753 at 825.620 kb on + strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.736 kb on + strand at 825.765 kb on - strand at 825.785 kb on + strand at 825.786 kb on - strand at 825.786 kb on - strand at 825.870 kb on + strand at 825.902 kb on + strand at 825.902 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.911 kb on - strand at 825.911 kb on - strand at 825.911 kb on - strand at 825.911 kb on - strand at 826.086 kb on + strand, within Psest_0754 at 826.086 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.493 kb on + strand, within Psest_0755 at 826.493 kb on + strand, within Psest_0755 at 826.493 kb on + strand, within Psest_0755 at 826.493 kb on + strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.598 kb on + strand, within Psest_0755 at 826.598 kb on + strand, within Psest_0755 at 826.598 kb on + strand, within Psest_0755 at 826.599 kb on - strand, within Psest_0755 at 826.599 kb on - strand, within Psest_0755 at 826.744 kb on + strand, within Psest_0755 at 826.745 kb on - strand, within Psest_0755 at 826.745 kb on - strand, within Psest_0755 at 826.745 kb on - strand, within Psest_0755 at 826.977 kb on + strand, within Psest_0755 at 826.977 kb on + strand, within Psest_0755 at 826.977 kb on + strand, within Psest_0755 at 826.977 kb on + strand, within Psest_0755 at 826.978 kb on - strand, within Psest_0755 at 827.022 kb on + strand at 827.022 kb on + strand at 827.022 kb on + strand at 827.022 kb on + strand at 827.023 kb on - strand at 827.130 kb on - strand at 827.134 kb on + strand at 827.134 kb on + strand at 827.134 kb on + strand at 827.135 kb on - strand at 827.135 kb on - strand at 827.135 kb on - strand at 827.135 kb on - strand at 827.135 kb on - strand at 827.205 kb on + strand at 827.205 kb on + strand at 827.206 kb on - strand at 827.257 kb on - strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.637 kb on + strand at 827.637 kb on + strand at 827.638 kb on - strand at 827.840 kb on - strand, within Psest_0757 at 827.852 kb on - strand, within Psest_0757 at 827.912 kb on + strand, within Psest_0757 at 828.016 kb on - strand, within Psest_0757 at 828.094 kb on + strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 200 mM remove 825,302 + Psest_0753 0.54 -1.8 825,334 + Psest_0753 0.57 +0.2 825,334 + Psest_0753 0.57 +0.2 825,434 + Psest_0753 0.66 +1.0 825,434 + Psest_0753 0.66 +1.9 825,470 + Psest_0753 0.69 +1.4 825,470 + Psest_0753 0.69 +0.2 825,470 + Psest_0753 0.69 -1.5 825,470 + Psest_0753 0.69 -0.3 825,470 + Psest_0753 0.69 -0.1 825,471 - Psest_0753 0.69 -1.4 825,471 - Psest_0753 0.69 -0.8 825,471 - Psest_0753 0.69 -0.6 825,471 - Psest_0753 0.69 -0.3 825,512 + Psest_0753 0.73 -1.1 825,516 + Psest_0753 0.73 +1.7 825,516 + Psest_0753 0.73 -1.0 825,516 + Psest_0753 0.73 +1.2 825,517 - Psest_0753 0.74 +1.2 825,517 - Psest_0753 0.74 -0.2 825,608 + Psest_0753 0.82 -0.0 825,608 + Psest_0753 0.82 +0.7 825,608 + Psest_0753 0.82 -2.9 825,609 - Psest_0753 0.82 -0.4 825,609 - Psest_0753 0.82 +0.5 825,620 + Psest_0753 0.83 +0.3 825,620 + Psest_0753 0.83 -0.2 825,620 + Psest_0753 0.83 +0.0 825,621 - Psest_0753 0.83 -0.6 825,621 - Psest_0753 0.83 +0.5 825,621 - Psest_0753 0.83 -2.4 825,621 - Psest_0753 0.83 -1.5 825,621 - Psest_0753 0.83 -1.5 825,736 + -0.4 825,765 - -0.0 825,785 + +0.3 825,786 - +0.6 825,786 - +0.6 825,870 + -1.9 825,902 + +0.5 825,902 + -1.5 825,910 + -0.6 825,910 + +3.8 825,910 + +1.1 825,910 + +0.1 825,910 + -2.1 825,910 + -0.5 825,910 + +0.7 825,910 + -1.2 825,910 + +0.7 825,910 + -0.8 825,911 - +1.9 825,911 - -1.7 825,911 - -0.3 825,911 - -1.6 826,086 + Psest_0754 0.60 -2.3 826,086 + Psest_0754 0.60 -0.3 826,146 + Psest_0754 0.79 -1.9 826,146 + Psest_0754 0.79 +0.5 826,146 + Psest_0754 0.79 -0.1 826,146 + Psest_0754 0.79 -0.7 826,147 - Psest_0754 0.80 -2.4 826,147 - Psest_0754 0.80 -0.0 826,147 - Psest_0754 0.80 +0.3 826,147 - Psest_0754 0.80 -1.0 826,147 - Psest_0754 0.80 -0.5 826,149 + Psest_0754 0.80 -0.8 826,149 + Psest_0754 0.80 -3.8 826,149 + Psest_0754 0.80 +0.4 826,149 + Psest_0754 0.80 -0.0 826,149 + Psest_0754 0.80 -1.4 826,149 + Psest_0754 0.80 -0.1 826,149 + Psest_0754 0.80 -0.9 826,150 - Psest_0754 0.81 -0.5 826,150 - Psest_0754 0.81 +0.4 826,150 - Psest_0754 0.81 +0.2 826,150 - Psest_0754 0.81 +1.9 826,150 - Psest_0754 0.81 -1.4 826,150 - Psest_0754 0.81 -0.4 826,150 - Psest_0754 0.81 -3.0 826,150 - Psest_0754 0.81 -1.5 826,493 + Psest_0755 0.24 -0.9 826,493 + Psest_0755 0.24 -0.4 826,493 + Psest_0755 0.24 -0.7 826,493 + Psest_0755 0.24 -0.4 826,494 - Psest_0755 0.24 +0.3 826,494 - Psest_0755 0.24 +1.1 826,494 - Psest_0755 0.24 -2.1 826,494 - Psest_0755 0.24 -0.4 826,494 - Psest_0755 0.24 +2.3 826,494 - Psest_0755 0.24 -1.0 826,494 - Psest_0755 0.24 -1.2 826,494 - Psest_0755 0.24 +0.1 826,494 - Psest_0755 0.24 -1.1 826,598 + Psest_0755 0.37 +1.0 826,598 + Psest_0755 0.37 -0.5 826,598 + Psest_0755 0.37 -1.0 826,599 - Psest_0755 0.37 -1.3 826,599 - Psest_0755 0.37 -1.8 826,744 + Psest_0755 0.56 +0.3 826,745 - Psest_0755 0.56 -0.9 826,745 - Psest_0755 0.56 -0.5 826,745 - Psest_0755 0.56 -1.8 826,977 + Psest_0755 0.85 +1.4 826,977 + Psest_0755 0.85 -1.4 826,977 + Psest_0755 0.85 -0.2 826,977 + Psest_0755 0.85 -0.9 826,978 - Psest_0755 0.85 -2.4 827,022 + -1.2 827,022 + +4.0 827,022 + +0.3 827,022 + -0.5 827,023 - -0.3 827,130 - -1.4 827,134 + +1.8 827,134 + -1.3 827,134 + +0.9 827,135 - +0.3 827,135 - +0.7 827,135 - -0.7 827,135 - +0.3 827,135 - -0.3 827,205 + -3.1 827,205 + -0.2 827,206 - +1.6 827,257 - Psest_0756 0.14 +0.9 827,409 + Psest_0756 0.47 -1.3 827,409 + Psest_0756 0.47 -2.4 827,409 + Psest_0756 0.47 +0.4 827,409 + Psest_0756 0.47 -0.3 827,409 + Psest_0756 0.47 +2.6 827,409 + Psest_0756 0.47 -1.4 827,409 + Psest_0756 0.47 -1.0 827,410 - Psest_0756 0.47 -1.4 827,410 - Psest_0756 0.47 +0.5 827,410 - Psest_0756 0.47 -0.9 827,410 - Psest_0756 0.47 +0.2 827,410 - Psest_0756 0.47 +0.8 827,410 - Psest_0756 0.47 +0.8 827,410 - Psest_0756 0.47 +4.2 827,410 - Psest_0756 0.47 -1.6 827,637 + -1.4 827,637 + +0.3 827,638 - +1.7 827,840 - Psest_0757 0.31 -0.9 827,852 - Psest_0757 0.33 -0.2 827,912 + Psest_0757 0.46 +0.2 828,016 - Psest_0757 0.68 +0.5 828,094 + Psest_0757 0.84 -2.0 828,095 - Psest_0757 0.85 +1.8 828,095 - Psest_0757 0.85 +1.2 828,095 - Psest_0757 0.85 -1.0 828,095 - Psest_0757 0.85 +0.6
Or see this region's nucleotide sequence