Experiment: L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0479 and Psest_0480 overlap by 4 nucleotides Psest_0480 and Psest_0481 are separated by 153 nucleotides Psest_0481 and Psest_0482 are separated by 166 nucleotides Psest_0482 and Psest_0483 are separated by 63 nucleotides
Psest_0479: Psest_0479 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 529,637 to 530,254
_0479
Psest_0480: Psest_0480 - Uncharacterized protein conserved in bacteria, at 530,251 to 530,697
_0480
Psest_0481: Psest_0481 - Predicted phosphohydrolases, at 530,851 to 531,666
_0481
Psest_0482: Psest_0482 - yqiA-like hydrolase, affects the cell envelope <small>(from data)</small>, at 531,833 to 532,438
_0482
Psest_0483: Psest_0483 - DNA topoisomerase IV, B subunit, proteobacterial, at 532,502 to 534,481
_0483
Position (kb) 530
531
532 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 530.012 kb on + strand, within Psest_0479 at 530.012 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.119 kb on + strand, within Psest_0479 at 530.317 kb on + strand, within Psest_0480 at 530.317 kb on + strand, within Psest_0480 at 530.317 kb on + strand, within Psest_0480 at 530.317 kb on + strand, within Psest_0480 at 530.317 kb on + strand, within Psest_0480 at 530.317 kb on + strand, within Psest_0480 at 530.318 kb on - strand, within Psest_0480 at 530.318 kb on - strand, within Psest_0480 at 530.318 kb on - strand, within Psest_0480 at 530.318 kb on - strand, within Psest_0480 at 530.318 kb on - strand, within Psest_0480 at 530.321 kb on + strand, within Psest_0480 at 530.321 kb on + strand, within Psest_0480 at 530.321 kb on + strand, within Psest_0480 at 530.322 kb on - strand, within Psest_0480 at 530.322 kb on - strand, within Psest_0480 at 530.322 kb on - strand, within Psest_0480 at 530.515 kb on + strand, within Psest_0480 at 530.515 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.585 kb on - strand, within Psest_0480 at 530.751 kb on + strand at 530.751 kb on + strand at 530.751 kb on + strand at 530.752 kb on - strand at 530.752 kb on - strand at 530.752 kb on - strand at 530.811 kb on + strand at 530.811 kb on + strand at 530.812 kb on - strand at 530.812 kb on - strand at 530.816 kb on + strand at 530.816 kb on + strand at 530.816 kb on + strand at 530.817 kb on - strand at 530.817 kb on - strand at 530.817 kb on - strand at 530.817 kb on - strand at 530.955 kb on + strand, within Psest_0481 at 531.662 kb on - strand at 531.738 kb on + strand at 531.746 kb on + strand at 531.746 kb on + strand at 531.746 kb on + strand at 531.746 kb on + strand at 531.746 kb on + strand at 531.746 kb on + strand at 531.747 kb on - strand at 531.747 kb on - strand at 531.747 kb on - strand at 531.747 kb on - strand at 531.747 kb on - strand at 531.747 kb on - strand at 531.802 kb on + strand at 531.802 kb on + strand at 531.803 kb on - strand at 531.803 kb on - strand at 531.820 kb on - strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 532.056 kb on - strand, within Psest_0482 at 532.058 kb on + strand, within Psest_0482 at 532.058 kb on + strand, within Psest_0482 at 532.058 kb on + strand, within Psest_0482 at 532.142 kb on + strand, within Psest_0482 at 532.166 kb on + strand, within Psest_0482 at 532.292 kb on + strand, within Psest_0482 at 532.313 kb on + strand, within Psest_0482 at 532.313 kb on + strand, within Psest_0482 at 532.313 kb on + strand, within Psest_0482 at 532.333 kb on + strand, within Psest_0482 at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 200 mM remove 530,012 + Psest_0479 0.61 -1.3 530,012 + Psest_0479 0.61 +0.2 530,048 + Psest_0479 0.67 -1.3 530,048 + Psest_0479 0.67 -0.1 530,048 + Psest_0479 0.67 -0.3 530,048 + Psest_0479 0.67 -0.1 530,048 + Psest_0479 0.67 -1.5 530,048 + Psest_0479 0.67 +0.3 530,049 - Psest_0479 0.67 +0.3 530,049 - Psest_0479 0.67 +1.7 530,049 - Psest_0479 0.67 -0.2 530,049 - Psest_0479 0.67 -0.5 530,049 - Psest_0479 0.67 -0.2 530,049 - Psest_0479 0.67 -0.7 530,054 + Psest_0479 0.67 -0.5 530,054 + Psest_0479 0.67 -1.3 530,054 + Psest_0479 0.67 -0.4 530,054 + Psest_0479 0.67 -0.5 530,054 + Psest_0479 0.67 -0.9 530,054 + Psest_0479 0.67 -0.8 530,054 + Psest_0479 0.67 -1.9 530,055 - Psest_0479 0.68 +1.2 530,055 - Psest_0479 0.68 +0.4 530,055 - Psest_0479 0.68 -2.1 530,055 - Psest_0479 0.68 +0.5 530,055 - Psest_0479 0.68 -0.2 530,055 - Psest_0479 0.68 +1.4 530,055 - Psest_0479 0.68 +1.7 530,055 - Psest_0479 0.68 -0.2 530,055 - Psest_0479 0.68 -2.4 530,055 - Psest_0479 0.68 -0.3 530,055 - Psest_0479 0.68 -0.8 530,055 - Psest_0479 0.68 +0.4 530,055 - Psest_0479 0.68 -0.8 530,055 - Psest_0479 0.68 +0.7 530,119 + Psest_0479 0.78 -0.4 530,317 + Psest_0480 0.15 +0.3 530,317 + Psest_0480 0.15 +0.5 530,317 + Psest_0480 0.15 -1.2 530,317 + Psest_0480 0.15 -2.1 530,317 + Psest_0480 0.15 -0.4 530,317 + Psest_0480 0.15 -0.9 530,318 - Psest_0480 0.15 -0.7 530,318 - Psest_0480 0.15 -1.1 530,318 - Psest_0480 0.15 +2.7 530,318 - Psest_0480 0.15 +0.3 530,318 - Psest_0480 0.15 +1.0 530,321 + Psest_0480 0.16 +0.8 530,321 + Psest_0480 0.16 -0.5 530,321 + Psest_0480 0.16 -1.2 530,322 - Psest_0480 0.16 -0.7 530,322 - Psest_0480 0.16 -0.2 530,322 - Psest_0480 0.16 -0.5 530,515 + Psest_0480 0.59 -1.4 530,515 + Psest_0480 0.59 -0.6 530,578 + Psest_0480 0.73 +0.2 530,578 + Psest_0480 0.73 +0.8 530,578 + Psest_0480 0.73 -2.4 530,578 + Psest_0480 0.73 -0.1 530,578 + Psest_0480 0.73 -0.6 530,578 + Psest_0480 0.73 -0.2 530,579 - Psest_0480 0.73 -2.1 530,579 - Psest_0480 0.73 +2.8 530,579 - Psest_0480 0.73 +1.8 530,579 - Psest_0480 0.73 +0.0 530,579 - Psest_0480 0.73 -0.7 530,579 - Psest_0480 0.73 +0.7 530,579 - Psest_0480 0.73 -0.6 530,579 - Psest_0480 0.73 +0.9 530,585 - Psest_0480 0.75 -0.6 530,751 + -3.7 530,751 + +2.1 530,751 + -0.6 530,752 - +0.8 530,752 - -1.3 530,752 - -0.7 530,811 + -1.9 530,811 + -0.3 530,812 - -0.7 530,812 - +0.0 530,816 + +1.1 530,816 + -0.6 530,816 + -0.6 530,817 - -1.0 530,817 - -0.2 530,817 - -2.1 530,817 - -0.1 530,955 + Psest_0481 0.13 +0.3 531,662 - +0.9 531,738 + +1.5 531,746 + -2.5 531,746 + +0.5 531,746 + +0.8 531,746 + -0.8 531,746 + +0.3 531,746 + -0.3 531,747 - -2.9 531,747 - -0.7 531,747 - +0.3 531,747 - +0.5 531,747 - -2.5 531,747 - +0.6 531,802 + -0.2 531,802 + +1.0 531,803 - +0.9 531,803 - -0.5 531,820 - +0.4 531,860 + -1.7 531,860 + +2.7 531,860 + +1.2 531,860 + +1.8 531,860 + +2.3 531,860 + +1.4 531,860 + +1.1 531,860 + +2.3 531,860 + -0.6 531,861 - +1.5 531,861 - +1.4 531,861 - +2.0 531,861 - +0.9 531,861 - +1.6 531,861 - -0.0 531,861 - +1.7 531,862 + +0.2 531,862 + +3.1 531,862 + -1.0 531,862 + +1.2 531,862 + +1.9 531,862 + +0.1 531,862 + -1.6 531,862 + +0.2 531,862 + +2.0 531,862 + +1.4 531,862 + +1.8 531,862 + +2.2 531,862 - +0.2 531,863 - +1.3 531,863 - +1.4 531,863 - +0.3 531,863 - +0.5 531,863 - +1.2 531,863 - +2.0 531,863 - +0.9 531,863 - +1.3 531,863 - +0.2 531,863 - +1.4 531,863 - +1.0 531,863 - +0.4 531,863 - +2.6 531,864 + +1.6 531,864 + +1.6 531,864 + +0.5 531,864 + +1.0 531,864 + +2.3 531,864 + +1.4 531,864 + -0.1 531,864 + +0.0 531,864 + +1.7 531,864 + -0.2 531,864 + +0.2 531,864 + -0.2 531,865 - +1.1 531,865 - +1.0 531,865 - +1.3 531,865 - +0.5 531,865 - +1.6 531,865 - -0.8 531,865 - +1.8 531,865 - +0.8 531,865 - +0.9 531,865 - +1.6 531,865 - +0.9 531,865 - +1.2 531,865 - +0.4 532,056 - Psest_0482 0.37 -1.1 532,058 + Psest_0482 0.37 +0.6 532,058 + Psest_0482 0.37 +2.0 532,058 + Psest_0482 0.37 +2.0 532,142 + Psest_0482 0.51 +1.4 532,166 + Psest_0482 0.55 +3.2 532,292 + Psest_0482 0.76 +2.5 532,313 + Psest_0482 0.79 +1.8 532,313 + Psest_0482 0.79 -0.2 532,313 + Psest_0482 0.79 +0.5 532,333 + Psest_0482 0.83 +2.3 532,576 + -0.2 532,576 + -1.0 532,576 + -0.6 532,576 + +0.6 532,576 + +0.8 532,576 + -0.1 532,576 + +0.1 532,576 + -0.8 532,576 + +0.6 532,576 + +0.8
Or see this region's nucleotide sequence