Experiment: L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0401 and Psest_0402 are separated by 20 nucleotides Psest_0402 and Psest_0403 overlap by 11 nucleotides
Psest_0401: Psest_0401 - isopentenyl-diphosphate delta-isomerase, type 2, at 435,730 to 436,770
_0401
Psest_0402: Psest_0402 - glycosyltransferase, MGT family, at 436,791 to 438,077
_0402
Psest_0403: Psest_0403 - lycopene cyclase, at 438,067 to 439,236
_0403
Position (kb) 436
437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 436.223 kb on + strand, within Psest_0401 at 436.658 kb on + strand, within Psest_0401 at 436.658 kb on + strand, within Psest_0401 at 436.821 kb on + strand at 436.822 kb on - strand at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.401 kb on + strand, within Psest_0402 at 437.401 kb on + strand, within Psest_0402 at 438.258 kb on + strand, within Psest_0403 at 438.258 kb on + strand, within Psest_0403 at 438.258 kb on + strand, within Psest_0403 at 438.259 kb on - strand, within Psest_0403 at 438.259 kb on - strand, within Psest_0403 at 438.259 kb on - strand, within Psest_0403 at 438.259 kb on - strand, within Psest_0403 at 438.259 kb on - strand, within Psest_0403 at 438.283 kb on + strand, within Psest_0403 at 438.625 kb on + strand, within Psest_0403 at 438.625 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.673 kb on + strand, within Psest_0403 at 438.673 kb on + strand, within Psest_0403 at 438.674 kb on - strand, within Psest_0403 at 438.674 kb on - strand, within Psest_0403 at 438.718 kb on - strand, within Psest_0403 at 438.727 kb on + strand, within Psest_0403 at 438.727 kb on + strand, within Psest_0403 at 438.728 kb on - strand, within Psest_0403 at 438.728 kb on - strand, within Psest_0403 at 438.886 kb on + strand, within Psest_0403 at 438.887 kb on - strand, within Psest_0403 at 438.977 kb on - strand, within Psest_0403
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 200 mM remove 436,223 + Psest_0401 0.47 -2.1 436,658 + Psest_0401 0.89 -1.2 436,658 + Psest_0401 0.89 +0.3 436,821 + +0.9 436,822 - +0.6 437,298 + Psest_0402 0.39 -2.4 437,298 + Psest_0402 0.39 -0.7 437,298 + Psest_0402 0.39 -1.0 437,298 + Psest_0402 0.39 -0.6 437,401 + Psest_0402 0.47 -0.6 437,401 + Psest_0402 0.47 +0.8 438,258 + Psest_0403 0.16 -0.2 438,258 + Psest_0403 0.16 +0.7 438,258 + Psest_0403 0.16 -0.4 438,259 - Psest_0403 0.16 +1.0 438,259 - Psest_0403 0.16 +0.6 438,259 - Psest_0403 0.16 +0.9 438,259 - Psest_0403 0.16 -0.5 438,259 - Psest_0403 0.16 -1.3 438,283 + Psest_0403 0.18 -1.4 438,625 + Psest_0403 0.48 -1.0 438,625 + Psest_0403 0.48 +0.0 438,670 + Psest_0403 0.52 +0.3 438,670 + Psest_0403 0.52 +0.0 438,670 + Psest_0403 0.52 +1.1 438,670 + Psest_0403 0.52 -1.7 438,670 + Psest_0403 0.52 +0.8 438,670 + Psest_0403 0.52 +1.0 438,670 + Psest_0403 0.52 -0.5 438,670 + Psest_0403 0.52 -0.6 438,670 + Psest_0403 0.52 -1.1 438,671 - Psest_0403 0.52 -0.4 438,671 - Psest_0403 0.52 -2.2 438,671 - Psest_0403 0.52 -0.1 438,671 - Psest_0403 0.52 -1.0 438,671 - Psest_0403 0.52 +1.7 438,671 - Psest_0403 0.52 +1.6 438,671 - Psest_0403 0.52 +0.3 438,671 - Psest_0403 0.52 +1.0 438,671 - Psest_0403 0.52 -2.4 438,671 - Psest_0403 0.52 -0.7 438,671 - Psest_0403 0.52 -0.6 438,671 - Psest_0403 0.52 -1.4 438,671 - Psest_0403 0.52 -1.5 438,673 + Psest_0403 0.52 -0.6 438,673 + Psest_0403 0.52 -0.1 438,674 - Psest_0403 0.52 -0.3 438,674 - Psest_0403 0.52 -0.3 438,718 - Psest_0403 0.56 +0.3 438,727 + Psest_0403 0.56 -2.1 438,727 + Psest_0403 0.56 +1.1 438,728 - Psest_0403 0.56 -3.3 438,728 - Psest_0403 0.56 -0.0 438,886 + Psest_0403 0.70 +1.3 438,887 - Psest_0403 0.70 -1.4 438,977 - Psest_0403 0.78 +1.2
Or see this region's nucleotide sequence