Experiment: Choline Lysine 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0741 and Psest_0742 are separated by 3 nucleotides Psest_0742 and Psest_0743 are separated by 100 nucleotides Psest_0743 and Psest_0744 are separated by 360 nucleotides
Psest_0741: Psest_0741 - drug resistance transporter, Bcr/CflA subfamily, at 814,286 to 815,458
_0741
Psest_0742: Psest_0742 - hypothetical protein, at 815,462 to 815,626
_0742
Psest_0743: Psest_0743 - adenosine deaminase, at 815,727 to 816,776
_0743
Psest_0744: Psest_0744 - Uncharacterized conserved protein, at 817,137 to 817,724
_0744
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 814.832 kb on + strand, within Psest_0741 at 814.833 kb on - strand, within Psest_0741 at 814.880 kb on + strand, within Psest_0741 at 814.881 kb on - strand, within Psest_0741 at 814.948 kb on + strand, within Psest_0741 at 814.958 kb on + strand, within Psest_0741 at 814.958 kb on + strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.994 kb on + strand, within Psest_0741 at 814.994 kb on + strand, within Psest_0741 at 815.573 kb on - strand, within Psest_0742 at 815.595 kb on + strand, within Psest_0742 at 815.640 kb on + strand at 815.642 kb on + strand at 815.830 kb on + strand at 815.842 kb on + strand, within Psest_0743 at 815.843 kb on - strand, within Psest_0743 at 816.071 kb on - strand, within Psest_0743 at 816.071 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.474 kb on + strand, within Psest_0743 at 816.475 kb on - strand, within Psest_0743 at 816.493 kb on + strand, within Psest_0743 at 816.494 kb on - strand, within Psest_0743 at 816.494 kb on - strand, within Psest_0743 at 816.496 kb on + strand, within Psest_0743 at 816.496 kb on + strand, within Psest_0743 at 816.736 kb on + strand at 816.736 kb on + strand at 816.737 kb on - strand at 816.763 kb on + strand at 816.763 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.785 kb on - strand at 816.785 kb on - strand at 816.785 kb on - strand at 816.785 kb on - strand at 816.882 kb on + strand at 816.883 kb on - strand at 817.086 kb on + strand at 817.086 kb on + strand at 817.086 kb on + strand at 817.087 kb on - strand at 817.116 kb on + strand at 817.117 kb on - strand at 817.117 kb on - strand at 817.117 kb on - strand at 817.138 kb on + strand at 817.138 kb on + strand at 817.139 kb on - strand at 817.139 kb on - strand at 817.175 kb on + strand at 817.584 kb on - strand, within Psest_0744 at 817.750 kb on + strand at 817.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 20 mM remove 814,832 + Psest_0741 0.47 +1.1 814,833 - Psest_0741 0.47 +1.7 814,880 + Psest_0741 0.51 +1.2 814,881 - Psest_0741 0.51 -0.1 814,948 + Psest_0741 0.56 +0.1 814,958 + Psest_0741 0.57 -0.2 814,958 + Psest_0741 0.57 +1.7 814,959 - Psest_0741 0.57 -0.2 814,959 - Psest_0741 0.57 -1.3 814,959 - Psest_0741 0.57 +0.5 814,994 + Psest_0741 0.60 -0.3 814,994 + Psest_0741 0.60 -0.0 815,573 - Psest_0742 0.67 -0.8 815,595 + Psest_0742 0.81 +2.6 815,640 + -0.4 815,642 + -0.2 815,830 + +0.3 815,842 + Psest_0743 0.11 +0.9 815,843 - Psest_0743 0.11 +2.1 816,071 - Psest_0743 0.33 +0.3 816,071 - Psest_0743 0.33 +1.4 816,455 - Psest_0743 0.69 +3.2 816,455 - Psest_0743 0.69 +0.5 816,455 - Psest_0743 0.69 +1.7 816,474 + Psest_0743 0.71 -0.1 816,475 - Psest_0743 0.71 +1.6 816,493 + Psest_0743 0.73 +2.0 816,494 - Psest_0743 0.73 +1.2 816,494 - Psest_0743 0.73 +1.3 816,496 + Psest_0743 0.73 +0.8 816,496 + Psest_0743 0.73 +0.4 816,736 + +0.5 816,736 + -0.2 816,737 - -1.6 816,763 + +2.0 816,763 + -2.4 816,784 + +0.5 816,784 + +0.4 816,784 + -1.5 816,784 + +0.4 816,785 - +0.4 816,785 - -0.8 816,785 - +0.4 816,785 - -2.4 816,882 + +0.7 816,883 - +1.3 817,086 + +1.3 817,086 + -1.3 817,086 + +0.2 817,087 - +0.2 817,116 + +3.0 817,117 - -1.3 817,117 - -0.2 817,117 - -1.8 817,138 + -0.9 817,138 + -0.5 817,139 - -1.8 817,139 - -0.4 817,175 + +1.6 817,584 - Psest_0744 0.76 +0.8 817,750 + +1.2 817,767 - +0.2
Or see this region's nucleotide sequence