Experiment: Choline Lysine 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3994 and Psest_3995 are separated by 76 nucleotides Psest_3995 and Psest_3996 are separated by 225 nucleotides
Psest_3994: Psest_3994 - Signal transduction histidine kinase, at 4,162,843 to 4,164,174
_3994
Psest_3995: Psest_3995 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,164,251 to 4,164,985
_3995
Psest_3996: Psest_3996 - Transcriptional accessory protein, at 4,165,211 to 4,167,544
_3996
Position (kb) 4164
4165 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4163.279 kb on + strand, within Psest_3994 at 4163.279 kb on + strand, within Psest_3994 at 4163.279 kb on + strand, within Psest_3994 at 4163.279 kb on + strand, within Psest_3994 at 4163.768 kb on + strand, within Psest_3994 at 4163.768 kb on + strand, within Psest_3994 at 4163.768 kb on + strand, within Psest_3994 at 4163.769 kb on - strand, within Psest_3994 at 4163.769 kb on - strand, within Psest_3994 at 4163.769 kb on - strand, within Psest_3994 at 4163.769 kb on - strand, within Psest_3994 at 4163.769 kb on - strand, within Psest_3994 at 4163.769 kb on - strand, within Psest_3994 at 4163.903 kb on + strand, within Psest_3994 at 4163.904 kb on - strand, within Psest_3994 at 4163.915 kb on + strand, within Psest_3994 at 4164.077 kb on + strand at 4164.077 kb on + strand at 4164.078 kb on - strand at 4164.078 kb on - strand at 4164.279 kb on + strand at 4164.367 kb on + strand, within Psest_3995 at 4164.541 kb on - strand, within Psest_3995 at 4164.664 kb on - strand, within Psest_3995 at 4165.015 kb on - strand at 4165.151 kb on + strand at 4165.151 kb on + strand at 4165.151 kb on + strand at 4165.152 kb on - strand at 4165.152 kb on - strand at 4165.204 kb on + strand at 4165.204 kb on + strand at 4165.204 kb on + strand at 4165.205 kb on - strand at 4165.205 kb on - strand at 4165.205 kb on - strand at 4165.514 kb on + strand, within Psest_3996 at 4165.514 kb on + strand, within Psest_3996 at 4165.523 kb on + strand, within Psest_3996 at 4165.523 kb on + strand, within Psest_3996 at 4165.523 kb on + strand, within Psest_3996 at 4165.524 kb on - strand, within Psest_3996 at 4165.524 kb on - strand, within Psest_3996 at 4165.524 kb on - strand, within Psest_3996 at 4165.524 kb on - strand, within Psest_3996 at 4165.524 kb on - strand, within Psest_3996 at 4165.525 kb on + strand, within Psest_3996 at 4165.525 kb on + strand, within Psest_3996 at 4165.525 kb on + strand, within Psest_3996 at 4165.525 kb on + strand, within Psest_3996 at 4165.526 kb on - strand, within Psest_3996 at 4165.526 kb on - strand, within Psest_3996 at 4165.526 kb on - strand, within Psest_3996 at 4165.526 kb on - strand, within Psest_3996 at 4165.526 kb on - strand, within Psest_3996 at 4165.526 kb on - strand, within Psest_3996 at 4165.526 kb on - strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.694 kb on + strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.695 kb on - strand, within Psest_3996 at 4165.826 kb on + strand, within Psest_3996
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 20 mM remove 4,163,279 + Psest_3994 0.33 -0.8 4,163,279 + Psest_3994 0.33 -3.4 4,163,279 + Psest_3994 0.33 -2.4 4,163,279 + Psest_3994 0.33 -1.3 4,163,768 + Psest_3994 0.69 -1.6 4,163,768 + Psest_3994 0.69 -3.1 4,163,768 + Psest_3994 0.69 -5.7 4,163,769 - Psest_3994 0.70 -0.3 4,163,769 - Psest_3994 0.70 -2.6 4,163,769 - Psest_3994 0.70 -2.8 4,163,769 - Psest_3994 0.70 -2.9 4,163,769 - Psest_3994 0.70 -3.6 4,163,769 - Psest_3994 0.70 -0.1 4,163,903 + Psest_3994 0.80 -0.9 4,163,904 - Psest_3994 0.80 -3.0 4,163,915 + Psest_3994 0.80 -1.9 4,164,077 + -3.4 4,164,077 + -4.6 4,164,078 - -4.2 4,164,078 - -4.2 4,164,279 + -2.1 4,164,367 + Psest_3995 0.16 -0.3 4,164,541 - Psest_3995 0.39 -2.9 4,164,664 - Psest_3995 0.56 -5.6 4,165,015 - -2.3 4,165,151 + -0.3 4,165,151 + -2.3 4,165,151 + +1.6 4,165,152 - +1.4 4,165,152 - +1.5 4,165,204 + -1.5 4,165,204 + +1.5 4,165,204 + -1.2 4,165,205 - +1.6 4,165,205 - +3.9 4,165,205 - +1.7 4,165,514 + Psest_3996 0.13 +1.2 4,165,514 + Psest_3996 0.13 +0.3 4,165,523 + Psest_3996 0.13 -2.5 4,165,523 + Psest_3996 0.13 +1.6 4,165,523 + Psest_3996 0.13 -1.5 4,165,524 - Psest_3996 0.13 +2.2 4,165,524 - Psest_3996 0.13 +1.0 4,165,524 - Psest_3996 0.13 +2.5 4,165,524 - Psest_3996 0.13 +1.0 4,165,524 - Psest_3996 0.13 +1.3 4,165,525 + Psest_3996 0.13 -0.5 4,165,525 + Psest_3996 0.13 +1.2 4,165,525 + Psest_3996 0.13 +2.2 4,165,525 + Psest_3996 0.13 +1.3 4,165,526 - Psest_3996 0.13 +1.6 4,165,526 - Psest_3996 0.13 +0.5 4,165,526 - Psest_3996 0.13 -0.3 4,165,526 - Psest_3996 0.13 +2.4 4,165,526 - Psest_3996 0.13 +4.8 4,165,526 - Psest_3996 0.13 +2.4 4,165,526 - Psest_3996 0.13 +1.5 4,165,694 + Psest_3996 0.21 -0.2 4,165,694 + Psest_3996 0.21 +2.2 4,165,694 + Psest_3996 0.21 +0.3 4,165,694 + Psest_3996 0.21 +0.1 4,165,694 + Psest_3996 0.21 +0.9 4,165,694 + Psest_3996 0.21 -0.7 4,165,694 + Psest_3996 0.21 +0.8 4,165,694 + Psest_3996 0.21 -1.6 4,165,694 + Psest_3996 0.21 -1.2 4,165,694 + Psest_3996 0.21 +1.9 4,165,694 + Psest_3996 0.21 -1.6 4,165,695 - Psest_3996 0.21 +2.1 4,165,695 - Psest_3996 0.21 +2.4 4,165,695 - Psest_3996 0.21 +0.2 4,165,695 - Psest_3996 0.21 +0.4 4,165,695 - Psest_3996 0.21 +1.3 4,165,695 - Psest_3996 0.21 +0.0 4,165,695 - Psest_3996 0.21 +1.3 4,165,695 - Psest_3996 0.21 +4.4 4,165,695 - Psest_3996 0.21 +2.3 4,165,695 - Psest_3996 0.21 +2.5 4,165,695 - Psest_3996 0.21 +1.6 4,165,695 - Psest_3996 0.21 +2.0 4,165,826 + Psest_3996 0.26 +1.2
Or see this region's nucleotide sequence