Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2851

Experiment: Choline Lysine 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 20 mM
3,039,863	-		Psest_2849	0.64	-2.5
3,039,919	+		Psest_2849	0.68	-3.2
3,039,920	-		Psest_2849	0.68	-2.6
3,039,920	-		Psest_2849	0.68	-0.9
3,039,920	-		Psest_2849	0.68	-3.5
3,039,920	-		Psest_2849	0.68	-2.5
3,039,920	-		Psest_2849	0.68	-3.7
3,039,974	-		Psest_2849	0.72	-1.8
3,040,067	-		Psest_2849	0.78	-2.2
3,040,222	+		Psest_2849	0.88	-2.1
3,040,222	+		Psest_2849	0.88	-3.0
3,040,223	-		Psest_2849	0.88	+0.4
3,040,223	-		Psest_2849	0.88	-2.4
3,040,270	-				-1.1
3,040,270	-				-2.2
3,040,507	+		Psest_2850	0.33	-0.9
3,040,508	-		Psest_2850	0.33	-2.3
3,040,705	+				-3.7
3,040,706	-				-2.4
3,040,811	+				-1.8
3,040,811	+				-2.6
3,040,811	+				-5.7
3,040,811	+				-1.9
3,040,974	-				-0.9
3,041,049	+		Psest_2851	0.12	-1.7
3,041,050	-		Psest_2851	0.12	-4.1
3,041,050	-		Psest_2851	0.12	-1.3
3,041,240	+		Psest_2851	0.18	-4.4
3,041,241	-		Psest_2851	0.18	-2.7
3,041,241	-		Psest_2851	0.18	-2.8
3,041,241	-		Psest_2851	0.18	-3.7
3,041,244	+		Psest_2851	0.19	-2.7
3,041,244	+		Psest_2851	0.19	-1.4
3,041,287	-		Psest_2851	0.20	-1.1
3,041,384	+		Psest_2851	0.24	-1.3
3,041,405	+		Psest_2851	0.24	-3.4
3,041,531	-		Psest_2851	0.29	-2.5
3,041,790	+		Psest_2851	0.38	-1.3
3,041,790	+		Psest_2851	0.38	-4.2
3,041,791	-		Psest_2851	0.38	-2.7
3,041,791	-		Psest_2851	0.38	-3.1
3,041,813	+		Psest_2851	0.39	-1.4
3,041,813	+		Psest_2851	0.39	-4.0
3,041,813	+		Psest_2851	0.39	-3.9
3,041,813	+		Psest_2851	0.39	-1.6
3,041,814	-		Psest_2851	0.39	-2.0
3,041,814	-		Psest_2851	0.39	-0.7
3,041,814	-		Psest_2851	0.39	-3.8
3,041,814	-		Psest_2851	0.39	-1.7
3,041,852	+		Psest_2851	0.40	-1.8
3,041,853	-		Psest_2851	0.40	-3.0
3,041,853	-		Psest_2851	0.40	-3.4
3,041,853	-		Psest_2851	0.40	-1.1
3,041,913	+		Psest_2851	0.42	-3.9
3,041,913	+		Psest_2851	0.42	-0.6
3,041,928	-		Psest_2851	0.43	+0.3
3,041,957	+		Psest_2851	0.44	-3.3
3,041,957	+		Psest_2851	0.44	-2.8
3,041,957	+		Psest_2851	0.44	-2.3
3,041,958	-		Psest_2851	0.44	-2.7
3,041,958	-		Psest_2851	0.44	-1.3
3,042,096	+		Psest_2851	0.49	-3.6
3,042,097	-		Psest_2851	0.49	-0.5
3,042,097	-		Psest_2851	0.49	-2.3
3,042,097	-		Psest_2851	0.49	-3.1
3,042,151	+		Psest_2851	0.51	-0.8
3,042,161	+		Psest_2851	0.51	+0.0
3,042,186	-		Psest_2851	0.52	-1.7
3,042,189	+		Psest_2851	0.52	-2.9
3,042,189	+		Psest_2851	0.52	-2.1
3,042,189	+		Psest_2851	0.52	-2.3
3,042,189	+		Psest_2851	0.52	+0.0
3,042,190	-		Psest_2851	0.52	-1.9
3,042,190	-		Psest_2851	0.52	-4.1
3,042,190	-		Psest_2851	0.52	-1.1
3,042,190	-		Psest_2851	0.52	-2.7
3,042,190	-		Psest_2851	0.52	-1.0
3,042,190	-		Psest_2851	0.52	-0.7
3,042,190	-		Psest_2851	0.52	-2.7
3,042,190	-		Psest_2851	0.52	-0.8
3,042,190	-		Psest_2851	0.52	-1.9
3,042,190	-		Psest_2851	0.52	-1.8
3,042,193	+		Psest_2851	0.53	-0.5
3,042,194	-		Psest_2851	0.53	-2.0
3,042,297	-		Psest_2851	0.56	-1.6
3,042,398	-		Psest_2851	0.60	+1.4
3,042,428	+		Psest_2851	0.61	-2.7
3,042,428	+		Psest_2851	0.61	-2.6
3,042,428	+		Psest_2851	0.61	-3.8
3,042,428	+		Psest_2851	0.61	-3.1
3,042,428	+		Psest_2851	0.61	-3.2
3,042,428	+		Psest_2851	0.61	-2.9
3,042,428	+		Psest_2851	0.61	-4.4
3,042,428	+		Psest_2851	0.61	-2.1
3,042,428	+		Psest_2851	0.61	-2.1
3,042,428	+		Psest_2851	0.61	-2.9
3,042,429	-		Psest_2851	0.61	-2.1
3,042,429	-		Psest_2851	0.61	-2.4
3,042,429	-		Psest_2851	0.61	-2.8
3,042,534	+		Psest_2851	0.65	-0.9
3,042,535	-		Psest_2851	0.65	-3.0
3,042,535	-		Psest_2851	0.65	-3.8
3,042,618	-		Psest_2851	0.68	-1.7
3,042,704	+		Psest_2851	0.71	-1.8
3,042,704	+		Psest_2851	0.71	-1.8
3,042,704	+		Psest_2851	0.71	-2.3
3,042,704	+		Psest_2851	0.71	-1.7
3,042,705	-		Psest_2851	0.71	-1.7
3,042,705	-		Psest_2851	0.71	-0.6
3,042,737	+		Psest_2851	0.72	-3.3
3,042,902	+		Psest_2851	0.78	-3.1
3,042,970	-		Psest_2851	0.80	-3.2
3,043,035	+		Psest_2851	0.83	-1.5
3,043,036	-		Psest_2851	0.83	-2.1
3,043,065	-		Psest_2851	0.84	+0.6
3,043,119	+		Psest_2851	0.86	-1.9
3,043,119	+		Psest_2851	0.86	-1.9
3,043,119	+		Psest_2851	0.86	-2.7
3,043,120	-		Psest_2851	0.86	-2.6
3,043,120	-		Psest_2851	0.86	-1.7
3,043,120	-		Psest_2851	0.86	-2.0
3,043,120	-		Psest_2851	0.86	-1.9
3,043,120	-		Psest_2851	0.86	-2.9
3,043,120	-		Psest_2851	0.86	-0.9
3,043,120	-		Psest_2851	0.86	-1.9
3,043,120	-		Psest_2851	0.86	-1.7
3,043,120	-		Psest_2851	0.86	-1.6
3,043,120	-		Psest_2851	0.86	-1.3
3,043,120	-		Psest_2851	0.86	-0.7
3,043,120	-		Psest_2851	0.86	-1.1
3,043,223	+		Psest_2851	0.89	-0.9
3,043,223	+		Psest_2851	0.89	-0.0
3,043,223	+		Psest_2851	0.89	-2.0
3,043,223	+		Psest_2851	0.89	-2.6
3,043,224	-		Psest_2851	0.89	-1.6
3,043,227	-		Psest_2851	0.90	-2.1
3,043,235	+		Psest_2851	0.90	-1.1
3,043,646	+				-0.8
3,043,646	+				-1.7
3,043,647	-				-0.4
3,043,647	-				-0.1
3,043,826	+		Psest_2852	0.20	+0.7
3,043,826	+		Psest_2852	0.20	+1.2
3,043,826	+		Psest_2852	0.20	-0.7
3,043,826	+		Psest_2852	0.20	+0.9
3,043,827	-		Psest_2852	0.20	+1.5
3,043,827	-		Psest_2852	0.20	+0.4
3,044,112	-		Psest_2852	0.82	-1.4
3,044,112	-		Psest_2852	0.82	+0.7
3,044,115	+		Psest_2852	0.82	-1.7
3,044,115	+		Psest_2852	0.82	+0.4
3,044,190	+				-1.2
3,044,190	+				+1.8
3,044,190	+				+2.5
3,044,191	-				-1.0
3,044,191	-				+0.0
3,044,310	+				+1.2
3,044,310	+				-0.2
3,044,310	+				+0.4
3,044,310	+				+1.0
3,044,310	+				+0.0
3,044,310	+				+1.7
3,044,310	+				+0.4
3,044,310	+				+2.7
3,044,310	+				+1.2
3,044,310	+				-0.2
3,044,310	+				+0.9
3,044,310	+				+0.4
3,044,310	+				+1.9
3,044,310	+				+1.1
3,044,310	+				-1.1
3,044,310	+				-1.2
3,044,310	+				+1.8
3,044,310	+				+0.5
3,044,310	+				+0.3
3,044,310	+				-0.4
3,044,310	+				+0.8
3,044,310	+				+2.5
3,044,310	+				+0.7
3,044,310	+				-1.0
3,044,310	+				+1.0
3,044,310	+				+0.3
3,044,310	+				-0.9
3,044,310	+				+0.3
3,044,311	-				-0.5
3,044,311	-				+1.0
3,044,311	-				+0.8
3,044,311	-				+0.6
3,044,311	-				-1.3
3,044,311	-				-1.4
3,044,311	-				+0.0
3,044,311	-				-1.3
3,044,311	-				+2.1
3,044,311	-				-1.8
3,044,311	-				+0.8
3,044,311	-				-0.1
3,044,311	-				+0.2
3,044,311	-				+0.8
3,044,311	-				+0.2
3,044,311	-				-0.1
3,044,311	-				+0.8
3,044,311	-				-2.0
3,044,311	-				-0.2
3,044,311	-				-1.2
3,044,311	-				+1.9
3,044,311	-				+1.7
3,044,311	-				+1.1
3,044,311	-				-1.9
3,044,311	-				+0.2
3,044,311	-				-1.2
3,044,311	-				-2.8
3,044,311	-				-0.4
3,044,311	-				+0.1
3,044,311	-				-1.4
3,044,311	-				-0.3
3,044,311	-				-0.3
3,044,311	-				-1.3
3,044,311	-				-2.7
3,044,311	-				+0.4
3,044,314	+				+1.2
3,044,314	+				-0.3
3,044,314	+				-0.9
3,044,314	+				+0.2
3,044,314	+				+1.1
3,044,314	+				+0.3
3,044,315	-				-0.1
3,044,315	-				-0.3
3,044,315	-				+0.5
3,044,315	-				+0.8
3,044,315	-				+0.4
3,044,315	-				+1.5
3,044,315	-				-1.3
3,044,349	+				+1.5
3,044,350	-				+0.6
3,044,350	-				-0.2
3,044,368	+				+1.3
3,044,368	+				+1.4
3,044,368	+				+0.9
3,044,369	-				-0.2
3,044,369	-				-2.1
3,044,369	-				-1.9
3,044,369	-				+0.4
3,044,378	+				-0.2
3,044,378	+				-1.7
3,044,378	+				-2.1
3,044,378	+				+0.2
3,044,378	+				-2.1
3,044,378	+				-0.1
3,044,378	+				-2.1
3,044,378	+				+2.0
3,044,378	+				+0.1
3,044,378	+				+0.5
3,044,378	+				-0.8
3,044,378	+				-0.5
3,044,378	+				+0.1
3,044,378	+				+1.2
3,044,378	+				+1.0
3,044,379	-				-0.3
3,044,379	-				-0.9
3,044,379	-				-2.2
3,044,379	-				-2.6
3,044,379	-				-0.4
3,044,379	-				+1.2
3,044,379	-				+0.7
3,044,379	-				-2.8
3,044,379	-				-1.2
3,044,379	-				+0.2
3,044,379	-				-1.0
3,044,379	-				-0.3
3,044,379	-				+0.3
3,044,379	-				-2.2
3,044,379	-				-0.7
3,044,379	-				-1.6
3,044,379	-				-2.3
3,044,379	-				-1.4
3,044,379	-				-0.0
3,044,379	-				-0.8
3,044,379	-				-1.8
3,044,382	+				+2.3
3,044,383	-				-0.3
3,044,504	+		Psest_2853	0.60	-0.4
3,044,505	-		Psest_2853	0.60	+1.0
3,044,505	-		Psest_2853	0.60	+0.0
3,044,505	-		Psest_2853	0.60	-1.6
3,044,505	-		Psest_2853	0.60	-0.7
3,044,505	-		Psest_2853	0.60	-1.3
3,044,505	-		Psest_2853	0.60	+0.3