Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20435

Experiment: Ferulic Acid (C) 1.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferulic Acid (C) 1.5 mM
4,606,736	-		PFLU_RS20425	0.34	-0.2
4,606,765	+		PFLU_RS20425	0.38	-0.3
4,606,771	-		PFLU_RS20425	0.39	+0.3
4,606,771	-		PFLU_RS20425	0.39	+0.9
4,606,771	-		PFLU_RS20425	0.39	-2.0
4,606,773	+		PFLU_RS20425	0.39	-1.3
4,606,773	+		PFLU_RS20425	0.39	-0.8
4,606,774	-		PFLU_RS20425	0.39	-0.1
4,606,774	-		PFLU_RS20425	0.39	-1.9
4,606,774	-		PFLU_RS20425	0.39	+0.3
4,606,774	-		PFLU_RS20425	0.39	+0.1
4,606,774	-		PFLU_RS20425	0.39	-0.1
4,606,774	-		PFLU_RS20425	0.39	-0.2
4,606,814	+		PFLU_RS20425	0.44	-0.5
4,606,814	+		PFLU_RS20425	0.44	+0.6
4,606,814	+		PFLU_RS20425	0.44	-2.0
4,606,814	+		PFLU_RS20425	0.44	+1.3
4,606,814	+		PFLU_RS20425	0.44	-0.4
4,606,814	+		PFLU_RS20425	0.44	-0.4
4,606,814	+		PFLU_RS20425	0.44	+0.3
4,606,815	-		PFLU_RS20425	0.44	-0.9
4,606,815	-		PFLU_RS20425	0.44	+0.6
4,606,815	-		PFLU_RS20425	0.44	-1.6
4,606,815	-		PFLU_RS20425	0.44	-1.4
4,606,815	-		PFLU_RS20425	0.44	+0.0
4,606,815	-		PFLU_RS20425	0.44	-0.1
4,606,815	-		PFLU_RS20425	0.44	-1.2
4,606,917	-		PFLU_RS20425	0.57	-0.9
4,606,949	+		PFLU_RS20425	0.61	+0.9
4,606,949	+		PFLU_RS20425	0.61	+1.1
4,606,949	+		PFLU_RS20425	0.61	-0.3
4,606,949	+		PFLU_RS20425	0.61	+1.5
4,606,949	+		PFLU_RS20425	0.61	-0.4
4,606,950	-		PFLU_RS20425	0.61	+1.3
4,606,950	-		PFLU_RS20425	0.61	-0.3
4,606,950	-		PFLU_RS20425	0.61	-0.6
4,606,965	+		PFLU_RS20425	0.63	-0.9
4,606,991	+		PFLU_RS20425	0.67	+0.9
4,606,991	+		PFLU_RS20425	0.67	+0.2
4,606,992	-		PFLU_RS20425	0.67	-0.4
4,606,992	-		PFLU_RS20425	0.67	+0.4
4,606,992	-		PFLU_RS20425	0.67	-0.1
4,606,992	-		PFLU_RS20425	0.67	+0.6
4,606,992	-		PFLU_RS20425	0.67	+0.6
4,606,992	-		PFLU_RS20425	0.67	-0.9
4,606,992	-		PFLU_RS20425	0.67	+2.6
4,607,073	-		PFLU_RS20425	0.77	-0.4
4,607,250	-				-1.1
4,607,250	-				+0.9
4,607,264	+				+2.4
4,607,264	+				+0.1
4,607,264	+				+0.1
4,607,264	+				+0.1
4,607,264	+				+1.6
4,607,265	-				-1.8
4,607,265	-				+0.9
4,607,265	-				-0.3
4,607,265	-				+0.2
4,607,265	-				+0.3
4,607,265	-				+0.4
4,607,311	+				+0.6
4,607,312	-				-0.1
4,607,351	-				-1.8
4,607,377	+				-0.1
4,607,378	-				+0.7
4,607,397	+		PFLU_RS20430	0.13	-1.3
4,607,398	-		PFLU_RS20430	0.13	-1.0
4,607,398	-		PFLU_RS20430	0.13	-1.4
4,607,460	+		PFLU_RS20430	0.38	-0.7
4,607,461	-		PFLU_RS20430	0.39	-1.0
4,607,461	-		PFLU_RS20430	0.39	+2.3
4,607,461	-		PFLU_RS20430	0.39	-0.3
4,607,461	-		PFLU_RS20430	0.39	-0.9
4,607,501	+		PFLU_RS20430	0.55	-0.3
4,607,501	+		PFLU_RS20430	0.55	+0.1
4,607,501	+		PFLU_RS20430	0.55	+0.6
4,607,502	-		PFLU_RS20430	0.55	+2.5
4,607,502	-		PFLU_RS20430	0.55	+0.9
4,607,502	-		PFLU_RS20430	0.55	-0.1
4,607,502	-		PFLU_RS20430	0.55	-0.6
4,607,537	+		PFLU_RS20430	0.70	-0.0
4,607,537	+		PFLU_RS20430	0.70	-1.0
4,607,538	-		PFLU_RS20430	0.70	+0.1
4,607,538	-		PFLU_RS20430	0.70	+1.1
4,607,573	+		PFLU_RS20430	0.84	-1.6
4,607,573	+		PFLU_RS20430	0.84	+0.9
4,607,574	-		PFLU_RS20430	0.85	-0.8
4,607,618	+				+0.6
4,607,619	-				-0.9
4,607,619	-				+1.9
4,607,697	-				-1.6
4,607,726	+		PFLU_RS20435	0.11	+0.3
4,607,911	+		PFLU_RS20435	0.38	-1.4
4,607,912	-		PFLU_RS20435	0.38	-0.4
4,607,942	+		PFLU_RS20435	0.43	-0.3
4,607,942	+		PFLU_RS20435	0.43	-0.5
4,608,219	+		PFLU_RS20435	0.84	-1.4
4,608,219	+		PFLU_RS20435	0.84	+1.0
4,608,219	+		PFLU_RS20435	0.84	-0.7
4,608,219	+		PFLU_RS20435	0.84	+0.1
4,608,220	-		PFLU_RS20435	0.84	-1.2
4,608,220	-		PFLU_RS20435	0.84	+1.3
4,608,220	-		PFLU_RS20435	0.84	-0.4
4,608,327	+				+2.5
4,608,327	+				+1.7
4,608,327	+				+2.9
4,608,328	-				+1.8
4,608,340	+				-2.0
4,608,341	-				+0.6
4,608,366	-				-0.5
4,608,418	+				+0.1
4,608,419	-				+1.1
4,608,510	+		PFLU_RS20440	0.13	+3.0
4,608,511	-		PFLU_RS20440	0.13	+2.2
4,608,511	-		PFLU_RS20440	0.13	-0.2
4,608,576	-		PFLU_RS20440	0.18	-0.4
4,608,820	+		PFLU_RS20440	0.35	+1.2
4,608,821	-		PFLU_RS20440	0.35	+1.4
4,608,835	+		PFLU_RS20440	0.36	+0.9
4,608,835	+		PFLU_RS20440	0.36	+3.2
4,608,835	+		PFLU_RS20440	0.36	+3.9
4,608,835	+		PFLU_RS20440	0.36	+2.0
4,608,836	-		PFLU_RS20440	0.37	+0.9
4,608,836	-		PFLU_RS20440	0.37	+2.5
4,608,836	-		PFLU_RS20440	0.37	+1.7
4,608,836	-		PFLU_RS20440	0.37	+0.5
4,608,836	-		PFLU_RS20440	0.37	+1.9
4,608,836	-		PFLU_RS20440	0.37	+1.1
4,608,836	-		PFLU_RS20440	0.37	+1.0
4,608,837	+		PFLU_RS20440	0.37	+0.5
4,608,837	+		PFLU_RS20440	0.37	+2.4
4,608,837	+		PFLU_RS20440	0.37	+1.8
4,608,837	+		PFLU_RS20440	0.37	+3.2
4,608,837	+		PFLU_RS20440	0.37	+1.5
4,608,838	-		PFLU_RS20440	0.37	+0.9
4,608,838	-		PFLU_RS20440	0.37	+1.4
4,608,838	-		PFLU_RS20440	0.37	+1.7
4,608,838	-		PFLU_RS20440	0.37	+1.9
4,608,880	+		PFLU_RS20440	0.40	+1.0
4,608,881	-		PFLU_RS20440	0.40	+1.7
4,608,881	-		PFLU_RS20440	0.40	+0.8
4,609,149	+		PFLU_RS20440	0.59	+1.6
4,609,150	-		PFLU_RS20440	0.59	+1.1
4,609,162	+		PFLU_RS20440	0.60	+1.7
4,609,162	+		PFLU_RS20440	0.60	+2.3
4,609,162	+		PFLU_RS20440	0.60	+4.3
4,609,162	+		PFLU_RS20440	0.60	+1.4
4,609,162	+		PFLU_RS20440	0.60	+1.6
4,609,162	+		PFLU_RS20440	0.60	+2.2
4,609,162	+		PFLU_RS20440	0.60	+0.8
4,609,162	+		PFLU_RS20440	0.60	+1.0
4,609,162	+		PFLU_RS20440	0.60	+1.2
4,609,162	+		PFLU_RS20440	0.60	+2.1
4,609,162	+		PFLU_RS20440	0.60	+1.2
4,609,162	+		PFLU_RS20440	0.60	+2.2
4,609,162	+		PFLU_RS20440	0.60	+2.5
4,609,162	+		PFLU_RS20440	0.60	-0.4
4,609,162	+		PFLU_RS20440	0.60	+2.7
4,609,163	-		PFLU_RS20440	0.60	+1.4
4,609,163	-		PFLU_RS20440	0.60	+1.0
4,609,163	-		PFLU_RS20440	0.60	+1.6
4,609,163	-		PFLU_RS20440	0.60	+0.8
4,609,163	-		PFLU_RS20440	0.60	+0.1
4,609,163	-		PFLU_RS20440	0.60	+3.9
4,609,163	-		PFLU_RS20440	0.60	+2.0
4,609,163	-		PFLU_RS20440	0.60	+0.6
4,609,163	-		PFLU_RS20440	0.60	+2.6
4,609,182	+		PFLU_RS20440	0.61	+1.4
4,609,182	+		PFLU_RS20440	0.61	+1.3
4,609,183	-		PFLU_RS20440	0.61	+1.8
4,609,183	-		PFLU_RS20440	0.61	+1.3
4,609,183	-		PFLU_RS20440	0.61	+2.4
4,609,183	-		PFLU_RS20440	0.61	+1.7
4,609,183	-		PFLU_RS20440	0.61	+1.1
4,609,183	-		PFLU_RS20440	0.61	-0.6
4,609,298	+		PFLU_RS20440	0.69	+0.6
4,609,298	+		PFLU_RS20440	0.69	+4.2
4,609,298	+		PFLU_RS20440	0.69	+1.5
4,609,298	+		PFLU_RS20440	0.69	+0.2
4,609,298	+		PFLU_RS20440	0.69	+1.8
4,609,298	+		PFLU_RS20440	0.69	+2.9
4,609,298	+		PFLU_RS20440	0.69	+1.4
4,609,298	+		PFLU_RS20440	0.69	+1.3
4,609,298	+		PFLU_RS20440	0.69	+4.5
4,609,298	+		PFLU_RS20440	0.69	+1.8
4,609,298	+		PFLU_RS20440	0.69	+1.7
4,609,298	+		PFLU_RS20440	0.69	+1.0
4,609,299	-		PFLU_RS20440	0.69	+0.5
4,609,299	-		PFLU_RS20440	0.69	+1.3
4,609,299	-		PFLU_RS20440	0.69	+2.4
4,609,299	-		PFLU_RS20440	0.69	+1.8
4,609,299	-		PFLU_RS20440	0.69	+3.3
4,609,299	-		PFLU_RS20440	0.69	+1.5
4,609,299	-		PFLU_RS20440	0.69	+3.9
4,609,299	-		PFLU_RS20440	0.69	+1.9
4,609,299	-		PFLU_RS20440	0.69	+2.2
4,609,299	-		PFLU_RS20440	0.69	+1.1
4,609,315	+		PFLU_RS20440	0.71	+2.2
4,609,315	+		PFLU_RS20440	0.71	+3.3
4,609,316	-		PFLU_RS20440	0.71	+3.5
4,609,316	-		PFLU_RS20440	0.71	+0.7
4,609,316	-		PFLU_RS20440	0.71	+1.6