Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18900

Experiment: Ferulic Acid (C) 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS18895 and PFLU_RS18900 overlap by 1 nucleotidesPFLU_RS18900 and PFLU_RS18905 are separated by 15 nucleotides PFLU_RS18895: PFLU_RS18895 - DHA2 family efflux MFS transporter permease subunit, at 4,270,520 to 4,272,049 _RS18895 PFLU_RS18900: PFLU_RS18900 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,272,049 to 4,273,251 _RS18900 PFLU_RS18905: PFLU_RS18905 - efflux transporter outer membrane subunit, at 4,273,267 to 4,274,718 _RS18905 Position (kb) 4272 4273 4274Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4271.070 kb on + strand, within PFLU_RS18895at 4271.070 kb on + strand, within PFLU_RS18895at 4271.070 kb on + strand, within PFLU_RS18895at 4271.070 kb on + strand, within PFLU_RS18895at 4271.070 kb on + strand, within PFLU_RS18895at 4271.070 kb on + strand, within PFLU_RS18895at 4271.071 kb on - strand, within PFLU_RS18895at 4271.302 kb on + strand, within PFLU_RS18895at 4271.303 kb on - strand, within PFLU_RS18895at 4271.303 kb on - strand, within PFLU_RS18895at 4271.303 kb on - strand, within PFLU_RS18895at 4271.303 kb on - strand, within PFLU_RS18895at 4271.442 kb on + strand, within PFLU_RS18895at 4271.442 kb on + strand, within PFLU_RS18895at 4271.442 kb on + strand, within PFLU_RS18895at 4271.442 kb on + strand, within PFLU_RS18895at 4271.442 kb on + strand, within PFLU_RS18895at 4271.442 kb on + strand, within PFLU_RS18895at 4271.442 kb on + strand, within PFLU_RS18895at 4271.442 kb on + strand, within PFLU_RS18895at 4271.442 kb on + strand, within PFLU_RS18895at 4271.443 kb on - strand, within PFLU_RS18895at 4271.443 kb on - strand, within PFLU_RS18895at 4271.443 kb on - strand, within PFLU_RS18895at 4271.443 kb on - strand, within PFLU_RS18895at 4271.443 kb on - strand, within PFLU_RS18895at 4271.443 kb on - strand, within PFLU_RS18895at 4271.443 kb on - strand, within PFLU_RS18895at 4271.443 kb on - strand, within PFLU_RS18895at 4271.457 kb on + strand, within PFLU_RS18895at 4271.457 kb on + strand, within PFLU_RS18895at 4271.457 kb on + strand, within PFLU_RS18895at 4271.458 kb on - strand, within PFLU_RS18895at 4271.458 kb on - strand, within PFLU_RS18895at 4271.458 kb on - strand, within PFLU_RS18895at 4271.458 kb on - strand, within PFLU_RS18895at 4271.533 kb on + strand, within PFLU_RS18895at 4271.533 kb on + strand, within PFLU_RS18895at 4271.534 kb on - strand, within PFLU_RS18895at 4271.556 kb on + strand, within PFLU_RS18895at 4271.556 kb on + strand, within PFLU_RS18895at 4271.556 kb on + strand, within PFLU_RS18895at 4271.556 kb on + strand, within PFLU_RS18895at 4271.556 kb on + strand, within PFLU_RS18895at 4271.556 kb on + strand, within PFLU_RS18895at 4271.556 kb on + strand, within PFLU_RS18895at 4271.556 kb on + strand, within PFLU_RS18895at 4271.556 kb on + strand, within PFLU_RS18895at 4271.556 kb on + strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.557 kb on - strand, within PFLU_RS18895at 4271.977 kb on + strandat 4271.977 kb on + strandat 4271.978 kb on - strandat 4271.978 kb on - strandat 4272.001 kb on + strandat 4272.137 kb on + strandat 4272.137 kb on + strandat 4272.138 kb on - strandat 4272.138 kb on - strandat 4272.138 kb on - strandat 4272.138 kb on - strandat 4272.138 kb on - strandat 4272.138 kb on - strandat 4272.138 kb on - strandat 4272.138 kb on - strandat 4272.274 kb on - strand, within PFLU_RS18900at 4272.315 kb on + strand, within PFLU_RS18900at 4272.392 kb on + strand, within PFLU_RS18900at 4272.392 kb on + strand, within PFLU_RS18900at 4272.392 kb on + strand, within PFLU_RS18900at 4272.393 kb on - strand, within PFLU_RS18900at 4272.393 kb on - strand, within PFLU_RS18900at 4272.393 kb on - strand, within PFLU_RS18900at 4272.410 kb on + strand, within PFLU_RS18900at 4272.410 kb on + strand, within PFLU_RS18900at 4272.410 kb on + strand, within PFLU_RS18900at 4272.411 kb on - strand, within PFLU_RS18900at 4272.411 kb on - strand, within PFLU_RS18900at 4272.450 kb on + strand, within PFLU_RS18900at 4272.572 kb on + strand, within PFLU_RS18900at 4272.572 kb on + strand, within PFLU_RS18900at 4272.572 kb on + strand, within PFLU_RS18900at 4272.618 kb on - strand, within PFLU_RS18900at 4272.618 kb on - strand, within PFLU_RS18900at 4272.618 kb on - strand, within PFLU_RS18900at 4272.891 kb on - strand, within PFLU_RS18900at 4272.891 kb on - strand, within PFLU_RS18900at 4273.079 kb on + strand, within PFLU_RS18900at 4273.079 kb on + strand, within PFLU_RS18900at 4273.080 kb on - strand, within PFLU_RS18900at 4273.080 kb on - strand, within PFLU_RS18900at 4273.080 kb on - strand, within PFLU_RS18900at 4273.080 kb on - strand, within PFLU_RS18900at 4273.112 kb on + strand, within PFLU_RS18900at 4273.112 kb on + strand, within PFLU_RS18900at 4273.121 kb on + strand, within PFLU_RS18900at 4273.121 kb on + strand, within PFLU_RS18900at 4273.121 kb on + strand, within PFLU_RS18900at 4273.122 kb on - strand, within PFLU_RS18900at 4273.258 kb on + strandat 4273.258 kb on + strandat 4273.258 kb on + strandat 4273.258 kb on + strandat 4273.258 kb on + strandat 4273.258 kb on + strandat 4273.258 kb on + strandat 4273.259 kb on - strandat 4273.259 kb on - strandat 4273.259 kb on - strandat 4273.259 kb on - strandat 4273.269 kb on - strandat 4273.423 kb on + strand, within PFLU_RS18905at 4273.423 kb on + strand, within PFLU_RS18905at 4273.423 kb on + strand, within PFLU_RS18905at 4273.423 kb on + strand, within PFLU_RS18905at 4273.423 kb on + strand, within PFLU_RS18905at 4273.424 kb on - strand, within PFLU_RS18905at 4273.424 kb on - strand, within PFLU_RS18905at 4273.424 kb on - strand, within PFLU_RS18905at 4273.424 kb on - strand, within PFLU_RS18905at 4273.424 kb on - strand, within PFLU_RS18905at 4273.424 kb on - strand, within PFLU_RS18905at 4273.433 kb on + strand, within PFLU_RS18905at 4273.433 kb on + strand, within PFLU_RS18905at 4273.433 kb on + strand, within PFLU_RS18905at 4273.433 kb on + strand, within PFLU_RS18905at 4273.433 kb on + strand, within PFLU_RS18905at 4273.433 kb on + strand, within PFLU_RS18905at 4273.434 kb on - strand, within PFLU_RS18905at 4273.434 kb on - strand, within PFLU_RS18905at 4273.434 kb on - strand, within PFLU_RS18905at 4273.434 kb on - strand, within PFLU_RS18905at 4273.437 kb on + strand, within PFLU_RS18905at 4273.437 kb on + strand, within PFLU_RS18905at 4273.438 kb on - strand, within PFLU_RS18905at 4273.455 kb on - strand, within PFLU_RS18905at 4273.455 kb on - strand, within PFLU_RS18905at 4273.475 kb on + strand, within PFLU_RS18905at 4273.592 kb on + strand, within PFLU_RS18905at 4273.592 kb on + strand, within PFLU_RS18905at 4273.593 kb on - strand, within PFLU_RS18905at 4273.593 kb on - strand, within PFLU_RS18905at 4273.593 kb on - strand, within PFLU_RS18905at 4273.593 kb on - strand, within PFLU_RS18905at 4273.593 kb on - strand, within PFLU_RS18905at 4273.593 kb on - strand, within PFLU_RS18905at 4273.613 kb on + strand, within PFLU_RS18905at 4273.613 kb on + strand, within PFLU_RS18905at 4273.613 kb on + strand, within PFLU_RS18905at 4273.689 kb on + strand, within PFLU_RS18905at 4273.689 kb on + strand, within PFLU_RS18905at 4273.689 kb on + strand, within PFLU_RS18905at 4273.690 kb on - strand, within PFLU_RS18905at 4273.690 kb on - strand, within PFLU_RS18905at 4273.690 kb on - strand, within PFLU_RS18905at 4273.776 kb on - strand, within PFLU_RS18905at 4274.051 kb on + strand, within PFLU_RS18905at 4274.052 kb on - strand, within PFLU_RS18905at 4274.174 kb on + strand, within PFLU_RS18905at 4274.174 kb on + strand, within PFLU_RS18905at 4274.174 kb on + strand, within PFLU_RS18905at 4274.174 kb on + strand, within PFLU_RS18905at 4274.174 kb on + strand, within PFLU_RS18905at 4274.175 kb on - strand, within PFLU_RS18905at 4274.175 kb on - strand, within PFLU_RS18905

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferulic Acid (C) 1.5 mM
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4,271,070 + PFLU_RS18895 0.36 +0.9
4,271,070 + PFLU_RS18895 0.36 +0.5
4,271,070 + PFLU_RS18895 0.36 -0.9
4,271,070 + PFLU_RS18895 0.36 +1.6
4,271,070 + PFLU_RS18895 0.36 +1.2
4,271,070 + PFLU_RS18895 0.36 -0.3
4,271,071 - PFLU_RS18895 0.36 +1.3
4,271,302 + PFLU_RS18895 0.51 +1.1
4,271,303 - PFLU_RS18895 0.51 -0.4
4,271,303 - PFLU_RS18895 0.51 +1.8
4,271,303 - PFLU_RS18895 0.51 -0.0
4,271,303 - PFLU_RS18895 0.51 +0.7
4,271,442 + PFLU_RS18895 0.60 +0.9
4,271,442 + PFLU_RS18895 0.60 +1.0
4,271,442 + PFLU_RS18895 0.60 +0.4
4,271,442 + PFLU_RS18895 0.60 -0.1
4,271,442 + PFLU_RS18895 0.60 +1.6
4,271,442 + PFLU_RS18895 0.60 -0.8
4,271,442 + PFLU_RS18895 0.60 +0.7
4,271,442 + PFLU_RS18895 0.60 +1.7
4,271,442 + PFLU_RS18895 0.60 +1.3
4,271,443 - PFLU_RS18895 0.60 +0.1
4,271,443 - PFLU_RS18895 0.60 +0.6
4,271,443 - PFLU_RS18895 0.60 -0.6
4,271,443 - PFLU_RS18895 0.60 +1.3
4,271,443 - PFLU_RS18895 0.60 +1.1
4,271,443 - PFLU_RS18895 0.60 -0.6
4,271,443 - PFLU_RS18895 0.60 -0.1
4,271,443 - PFLU_RS18895 0.60 -0.9
4,271,457 + PFLU_RS18895 0.61 +1.2
4,271,457 + PFLU_RS18895 0.61 -0.5
4,271,457 + PFLU_RS18895 0.61 -0.9
4,271,458 - PFLU_RS18895 0.61 +0.9
4,271,458 - PFLU_RS18895 0.61 -1.3
4,271,458 - PFLU_RS18895 0.61 -2.0
4,271,458 - PFLU_RS18895 0.61 +1.0
4,271,533 + PFLU_RS18895 0.66 +0.8
4,271,533 + PFLU_RS18895 0.66 +1.6
4,271,534 - PFLU_RS18895 0.66 -1.4
4,271,556 + PFLU_RS18895 0.68 +0.4
4,271,556 + PFLU_RS18895 0.68 -0.1
4,271,556 + PFLU_RS18895 0.68 +0.7
4,271,556 + PFLU_RS18895 0.68 +1.1
4,271,556 + PFLU_RS18895 0.68 +1.7
4,271,556 + PFLU_RS18895 0.68 -1.0
4,271,556 + PFLU_RS18895 0.68 +1.7
4,271,556 + PFLU_RS18895 0.68 +1.5
4,271,556 + PFLU_RS18895 0.68 +0.3
4,271,556 + PFLU_RS18895 0.68 +3.5
4,271,557 - PFLU_RS18895 0.68 +0.3
4,271,557 - PFLU_RS18895 0.68 +1.0
4,271,557 - PFLU_RS18895 0.68 +0.3
4,271,557 - PFLU_RS18895 0.68 +0.9
4,271,557 - PFLU_RS18895 0.68 +0.0
4,271,557 - PFLU_RS18895 0.68 +2.7
4,271,557 - PFLU_RS18895 0.68 -0.3
4,271,557 - PFLU_RS18895 0.68 -0.1
4,271,557 - PFLU_RS18895 0.68 +1.0
4,271,557 - PFLU_RS18895 0.68 +0.3
4,271,557 - PFLU_RS18895 0.68 +0.4
4,271,557 - PFLU_RS18895 0.68 +0.3
4,271,557 - PFLU_RS18895 0.68 -1.5
4,271,557 - PFLU_RS18895 0.68 -0.2
4,271,977 + +0.9
4,271,977 + +1.4
4,271,978 - -0.1
4,271,978 - -0.7
4,272,001 + +2.1
4,272,137 + +0.1
4,272,137 + +0.9
4,272,138 - +2.3
4,272,138 - -0.1
4,272,138 - +1.1
4,272,138 - +0.9
4,272,138 - +0.8
4,272,138 - +0.5
4,272,138 - -0.4
4,272,138 - -0.3
4,272,274 - PFLU_RS18900 0.19 +0.9
4,272,315 + PFLU_RS18900 0.22 +0.3
4,272,392 + PFLU_RS18900 0.29 +1.1
4,272,392 + PFLU_RS18900 0.29 +1.0
4,272,392 + PFLU_RS18900 0.29 +2.7
4,272,393 - PFLU_RS18900 0.29 +2.1
4,272,393 - PFLU_RS18900 0.29 +3.3
4,272,393 - PFLU_RS18900 0.29 +0.3
4,272,410 + PFLU_RS18900 0.30 +1.4
4,272,410 + PFLU_RS18900 0.30 +1.1
4,272,410 + PFLU_RS18900 0.30 -0.4
4,272,411 - PFLU_RS18900 0.30 +0.9
4,272,411 - PFLU_RS18900 0.30 +0.6
4,272,450 + PFLU_RS18900 0.33 -0.6
4,272,572 + PFLU_RS18900 0.43 +1.9
4,272,572 + PFLU_RS18900 0.43 +1.7
4,272,572 + PFLU_RS18900 0.43 -0.1
4,272,618 - PFLU_RS18900 0.47 +1.7
4,272,618 - PFLU_RS18900 0.47 +1.5
4,272,618 - PFLU_RS18900 0.47 +0.9
4,272,891 - PFLU_RS18900 0.70 +1.4
4,272,891 - PFLU_RS18900 0.70 +1.1
4,273,079 + PFLU_RS18900 0.86 +0.1
4,273,079 + PFLU_RS18900 0.86 +0.9
4,273,080 - PFLU_RS18900 0.86 +1.4
4,273,080 - PFLU_RS18900 0.86 +0.5
4,273,080 - PFLU_RS18900 0.86 +3.1
4,273,080 - PFLU_RS18900 0.86 +0.5
4,273,112 + PFLU_RS18900 0.88 +3.1
4,273,112 + PFLU_RS18900 0.88 -0.3
4,273,121 + PFLU_RS18900 0.89 -0.1
4,273,121 + PFLU_RS18900 0.89 +0.5
4,273,121 + PFLU_RS18900 0.89 -0.2
4,273,122 - PFLU_RS18900 0.89 +3.3
4,273,258 + +0.4
4,273,258 + -0.4
4,273,258 + +1.8
4,273,258 + +0.7
4,273,258 + +2.1
4,273,258 + +0.6
4,273,258 + +1.3
4,273,259 - +1.4
4,273,259 - +0.3
4,273,259 - +0.9
4,273,259 - +1.1
4,273,269 - -0.6
4,273,423 + PFLU_RS18905 0.11 +0.9
4,273,423 + PFLU_RS18905 0.11 +1.1
4,273,423 + PFLU_RS18905 0.11 +0.6
4,273,423 + PFLU_RS18905 0.11 +3.1
4,273,423 + PFLU_RS18905 0.11 +1.4
4,273,424 - PFLU_RS18905 0.11 +1.7
4,273,424 - PFLU_RS18905 0.11 +1.0
4,273,424 - PFLU_RS18905 0.11 +1.7
4,273,424 - PFLU_RS18905 0.11 +0.6
4,273,424 - PFLU_RS18905 0.11 +1.7
4,273,424 - PFLU_RS18905 0.11 -0.1
4,273,433 + PFLU_RS18905 0.11 -0.1
4,273,433 + PFLU_RS18905 0.11 +0.1
4,273,433 + PFLU_RS18905 0.11 +0.7
4,273,433 + PFLU_RS18905 0.11 +1.4
4,273,433 + PFLU_RS18905 0.11 +2.1
4,273,433 + PFLU_RS18905 0.11 +1.7
4,273,434 - PFLU_RS18905 0.12 +1.7
4,273,434 - PFLU_RS18905 0.12 +0.2
4,273,434 - PFLU_RS18905 0.12 +0.2
4,273,434 - PFLU_RS18905 0.12 +1.1
4,273,437 + PFLU_RS18905 0.12 +1.6
4,273,437 + PFLU_RS18905 0.12 -1.5
4,273,438 - PFLU_RS18905 0.12 +0.1
4,273,455 - PFLU_RS18905 0.13 -0.1
4,273,455 - PFLU_RS18905 0.13 +1.3
4,273,475 + PFLU_RS18905 0.14 +0.6
4,273,592 + PFLU_RS18905 0.22 -1.5
4,273,592 + PFLU_RS18905 0.22 +1.1
4,273,593 - PFLU_RS18905 0.22 -1.2
4,273,593 - PFLU_RS18905 0.22 +1.4
4,273,593 - PFLU_RS18905 0.22 -0.7
4,273,593 - PFLU_RS18905 0.22 +1.0
4,273,593 - PFLU_RS18905 0.22 +1.7
4,273,593 - PFLU_RS18905 0.22 +1.1
4,273,613 + PFLU_RS18905 0.24 +0.7
4,273,613 + PFLU_RS18905 0.24 -0.4
4,273,613 + PFLU_RS18905 0.24 +1.5
4,273,689 + PFLU_RS18905 0.29 +0.7
4,273,689 + PFLU_RS18905 0.29 +0.4
4,273,689 + PFLU_RS18905 0.29 +1.5
4,273,690 - PFLU_RS18905 0.29 +1.4
4,273,690 - PFLU_RS18905 0.29 -0.1
4,273,690 - PFLU_RS18905 0.29 +1.1
4,273,776 - PFLU_RS18905 0.35 +0.9
4,274,051 + PFLU_RS18905 0.54 +1.7
4,274,052 - PFLU_RS18905 0.54 +2.3
4,274,174 + PFLU_RS18905 0.62 -0.1
4,274,174 + PFLU_RS18905 0.62 -0.9
4,274,174 + PFLU_RS18905 0.62 +0.2
4,274,174 + PFLU_RS18905 0.62 +0.5
4,274,174 + PFLU_RS18905 0.62 +0.4
4,274,175 - PFLU_RS18905 0.63 +0.9
4,274,175 - PFLU_RS18905 0.63 +1.3

Or see this region's nucleotide sequence