Experiment: 1-ethyl-3-methylimidazolium acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0519 and Psest_0520 are separated by 202 nucleotides Psest_0520 and Psest_0521 are separated by 86 nucleotides
Psest_0519: Psest_0519 - lipoate synthase, at 572,004 to 572,981
_0519
Psest_0520: Psest_0520 - hypothetical protein, at 573,184 to 573,528
_0520
Psest_0521: Psest_0521 - lytic murein transglycosylase, at 573,615 to 574,913
_0521
Position (kb) 573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 573.125 kb on - strand at 573.125 kb on - strand at 573.136 kb on + strand at 573.136 kb on + strand at 573.136 kb on + strand at 573.136 kb on + strand at 573.136 kb on + strand at 573.136 kb on + strand at 573.137 kb on - strand at 573.138 kb on + strand at 573.153 kb on - strand at 573.153 kb on - strand at 573.200 kb on + strand at 573.382 kb on + strand, within Psest_0520 at 573.500 kb on - strand at 573.500 kb on - strand at 573.505 kb on + strand at 573.505 kb on + strand at 573.506 kb on - strand at 573.552 kb on + strand at 573.552 kb on + strand at 573.553 kb on - strand at 573.886 kb on + strand, within Psest_0521 at 573.886 kb on + strand, within Psest_0521 at 573.904 kb on + strand, within Psest_0521 at 573.904 kb on + strand, within Psest_0521 at 573.926 kb on + strand, within Psest_0521 at 573.927 kb on - strand, within Psest_0521 at 574.144 kb on + strand, within Psest_0521 at 574.144 kb on + strand, within Psest_0521 at 574.145 kb on - strand, within Psest_0521 at 574.145 kb on - strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.231 kb on + strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521 at 574.232 kb on - strand, within Psest_0521
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 40 mM remove 573,125 - +1.5 573,125 - +0.7 573,136 + +1.5 573,136 + +0.0 573,136 + -0.8 573,136 + -0.8 573,136 + +0.7 573,136 + -0.6 573,137 - -1.5 573,138 + +1.4 573,153 - -0.1 573,153 - -0.1 573,200 + -1.8 573,382 + Psest_0520 0.57 -2.0 573,500 - -0.4 573,500 - +0.1 573,505 + +1.0 573,505 + -2.8 573,506 - +1.8 573,552 + +1.7 573,552 + -0.8 573,553 - +0.2 573,886 + Psest_0521 0.21 -0.4 573,886 + Psest_0521 0.21 -0.8 573,904 + Psest_0521 0.22 +2.0 573,904 + Psest_0521 0.22 -2.2 573,926 + Psest_0521 0.24 -0.3 573,927 - Psest_0521 0.24 -0.2 574,144 + Psest_0521 0.41 +2.4 574,144 + Psest_0521 0.41 -0.2 574,145 - Psest_0521 0.41 -0.6 574,145 - Psest_0521 0.41 -1.4 574,231 + Psest_0521 0.47 -1.9 574,231 + Psest_0521 0.47 -3.2 574,231 + Psest_0521 0.47 +0.2 574,231 + Psest_0521 0.47 -0.6 574,231 + Psest_0521 0.47 -2.5 574,231 + Psest_0521 0.47 +0.6 574,231 + Psest_0521 0.47 +0.5 574,231 + Psest_0521 0.47 +1.5 574,231 + Psest_0521 0.47 -1.6 574,231 + Psest_0521 0.47 -1.6 574,231 + Psest_0521 0.47 -0.6 574,231 + Psest_0521 0.47 +0.2 574,231 + Psest_0521 0.47 +0.4 574,231 + Psest_0521 0.47 -0.7 574,231 + Psest_0521 0.47 +0.8 574,232 - Psest_0521 0.47 +1.1 574,232 - Psest_0521 0.47 +0.3 574,232 - Psest_0521 0.47 -1.8 574,232 - Psest_0521 0.47 +2.9 574,232 - Psest_0521 0.47 +1.0 574,232 - Psest_0521 0.47 -3.1 574,232 - Psest_0521 0.47 +0.3 574,232 - Psest_0521 0.47 -2.3 574,232 - Psest_0521 0.47 +0.3 574,232 - Psest_0521 0.47 -1.2 574,232 - Psest_0521 0.47 -0.2 574,232 - Psest_0521 0.47 -1.2 574,232 - Psest_0521 0.47 +0.7 574,232 - Psest_0521 0.47 +0.7
Or see this region's nucleotide sequence