Experiment: 1-ethyl-3-methylimidazolium acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0373 and Psest_0374 are separated by 450 nucleotides Psest_0374 and Psest_0375 are separated by 70 nucleotides
Psest_0373: Psest_0373 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 399,248 to 400,639
_0373
Psest_0374: Psest_0374 - 5-dehydro-4-deoxyglucarate dehydratase, at 401,090 to 402,001
_0374
Psest_0375: Psest_0375 - NAD-dependent aldehyde dehydrogenases, at 402,072 to 403,514
_0375
Position (kb) 401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 400.099 kb on - strand, within Psest_0373 at 400.099 kb on - strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.129 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.140 kb on + strand, within Psest_0373 at 400.398 kb on + strand, within Psest_0373 at 400.473 kb on - strand, within Psest_0373 at 400.533 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.864 kb on - strand at 400.898 kb on + strand at 400.899 kb on - strand at 400.899 kb on - strand at 400.906 kb on + strand at 400.907 kb on - strand at 401.056 kb on + strand at 401.187 kb on - strand, within Psest_0374 at 401.187 kb on - strand, within Psest_0374 at 401.188 kb on + strand, within Psest_0374 at 401.188 kb on + strand, within Psest_0374 at 401.189 kb on - strand, within Psest_0374 at 401.282 kb on + strand, within Psest_0374 at 401.430 kb on - strand, within Psest_0374 at 401.430 kb on - strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.654 kb on + strand, within Psest_0374 at 401.655 kb on - strand, within Psest_0374 at 401.684 kb on + strand, within Psest_0374 at 401.684 kb on + strand, within Psest_0374 at 401.684 kb on + strand, within Psest_0374 at 401.685 kb on - strand, within Psest_0374 at 401.685 kb on - strand, within Psest_0374 at 401.685 kb on - strand, within Psest_0374 at 401.685 kb on - strand, within Psest_0374 at 401.697 kb on - strand, within Psest_0374 at 401.720 kb on + strand, within Psest_0374 at 401.720 kb on + strand, within Psest_0374 at 401.768 kb on + strand, within Psest_0374 at 401.769 kb on - strand, within Psest_0374 at 401.769 kb on - strand, within Psest_0374 at 401.769 kb on - strand, within Psest_0374 at 401.769 kb on - strand, within Psest_0374 at 401.864 kb on + strand, within Psest_0374 at 401.958 kb on - strand at 402.000 kb on - strand at 402.027 kb on - strand at 402.082 kb on + strand at 402.082 kb on + strand at 402.082 kb on + strand at 402.082 kb on + strand at 402.082 kb on + strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.090 kb on + strand at 402.090 kb on + strand at 402.398 kb on + strand, within Psest_0375 at 402.399 kb on - strand, within Psest_0375 at 402.399 kb on - strand, within Psest_0375 at 402.408 kb on + strand, within Psest_0375 at 402.408 kb on + strand, within Psest_0375 at 402.409 kb on - strand, within Psest_0375 at 402.409 kb on - strand, within Psest_0375 at 402.409 kb on - strand, within Psest_0375 at 402.409 kb on - strand, within Psest_0375 at 402.409 kb on - strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.961 kb on - strand, within Psest_0375 at 402.961 kb on - strand, within Psest_0375
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 40 mM remove 400,099 - Psest_0373 0.61 -0.3 400,099 - Psest_0373 0.61 +0.8 400,127 + Psest_0373 0.63 -0.3 400,127 + Psest_0373 0.63 -2.8 400,127 + Psest_0373 0.63 +0.6 400,127 + Psest_0373 0.63 -1.0 400,127 + Psest_0373 0.63 -0.8 400,127 + Psest_0373 0.63 +1.2 400,127 + Psest_0373 0.63 +0.5 400,127 + Psest_0373 0.63 -2.1 400,127 + Psest_0373 0.63 +2.1 400,127 + Psest_0373 0.63 +0.3 400,127 + Psest_0373 0.63 -0.3 400,127 + Psest_0373 0.63 -0.8 400,127 + Psest_0373 0.63 +0.2 400,127 + Psest_0373 0.63 -1.1 400,127 + Psest_0373 0.63 +1.4 400,128 - Psest_0373 0.63 +0.7 400,128 - Psest_0373 0.63 -0.6 400,128 - Psest_0373 0.63 -0.6 400,128 - Psest_0373 0.63 -0.1 400,128 - Psest_0373 0.63 -1.2 400,128 - Psest_0373 0.63 -1.9 400,128 - Psest_0373 0.63 -1.7 400,128 - Psest_0373 0.63 +0.2 400,128 - Psest_0373 0.63 -2.2 400,128 - Psest_0373 0.63 +0.3 400,128 - Psest_0373 0.63 +0.1 400,128 - Psest_0373 0.63 -1.4 400,128 - Psest_0373 0.63 -1.6 400,128 - Psest_0373 0.63 -0.8 400,128 - Psest_0373 0.63 -2.2 400,128 - Psest_0373 0.63 +0.5 400,128 - Psest_0373 0.63 +0.8 400,128 - Psest_0373 0.63 +1.3 400,128 - Psest_0373 0.63 -2.1 400,128 - Psest_0373 0.63 -0.8 400,128 - Psest_0373 0.63 +0.3 400,128 - Psest_0373 0.63 -2.8 400,128 - Psest_0373 0.63 -0.3 400,128 - Psest_0373 0.63 +0.9 400,128 - Psest_0373 0.63 -0.6 400,128 - Psest_0373 0.63 +0.5 400,128 - Psest_0373 0.63 -0.7 400,128 - Psest_0373 0.63 -0.7 400,128 - Psest_0373 0.63 -0.2 400,128 - Psest_0373 0.63 +0.2 400,128 - Psest_0373 0.63 +0.5 400,128 - Psest_0373 0.63 +0.1 400,128 - Psest_0373 0.63 +1.0 400,129 + Psest_0373 0.63 +0.1 400,131 + Psest_0373 0.63 +1.0 400,131 + Psest_0373 0.63 +1.2 400,131 + Psest_0373 0.63 +0.7 400,131 + Psest_0373 0.63 -1.9 400,131 + Psest_0373 0.63 -0.5 400,131 + Psest_0373 0.63 -1.0 400,131 + Psest_0373 0.63 -0.9 400,131 + Psest_0373 0.63 -0.7 400,131 + Psest_0373 0.63 +0.3 400,131 + Psest_0373 0.63 +0.4 400,131 + Psest_0373 0.63 +1.8 400,131 + Psest_0373 0.63 +1.4 400,131 + Psest_0373 0.63 +1.4 400,131 + Psest_0373 0.63 -1.0 400,131 + Psest_0373 0.63 -0.7 400,131 + Psest_0373 0.63 -0.6 400,131 + Psest_0373 0.63 -0.5 400,131 + Psest_0373 0.63 -0.8 400,131 + Psest_0373 0.63 -2.2 400,131 + Psest_0373 0.63 +0.6 400,131 + Psest_0373 0.63 -0.0 400,131 + Psest_0373 0.63 -1.9 400,131 + Psest_0373 0.63 -0.5 400,131 + Psest_0373 0.63 -0.4 400,131 + Psest_0373 0.63 -2.5 400,131 + Psest_0373 0.63 -1.0 400,131 + Psest_0373 0.63 +0.5 400,131 + Psest_0373 0.63 +0.7 400,132 - Psest_0373 0.64 +0.3 400,132 - Psest_0373 0.64 -0.1 400,132 - Psest_0373 0.64 +1.5 400,132 - Psest_0373 0.64 +0.5 400,132 - Psest_0373 0.64 -0.8 400,132 - Psest_0373 0.64 -0.7 400,132 - Psest_0373 0.64 +1.9 400,132 - Psest_0373 0.64 -1.1 400,132 - Psest_0373 0.64 +1.4 400,132 - Psest_0373 0.64 +1.0 400,132 - Psest_0373 0.64 -0.8 400,132 - Psest_0373 0.64 +0.4 400,132 - Psest_0373 0.64 -0.9 400,132 - Psest_0373 0.64 +0.7 400,132 - Psest_0373 0.64 +2.4 400,132 - Psest_0373 0.64 +1.4 400,132 - Psest_0373 0.64 -1.5 400,132 - Psest_0373 0.64 +0.1 400,132 - Psest_0373 0.64 +1.9 400,132 - Psest_0373 0.64 -0.5 400,132 - Psest_0373 0.64 -2.0 400,132 - Psest_0373 0.64 +0.4 400,132 - Psest_0373 0.64 +0.8 400,132 - Psest_0373 0.64 +2.1 400,132 - Psest_0373 0.64 +0.7 400,132 - Psest_0373 0.64 +2.6 400,132 - Psest_0373 0.64 +0.4 400,132 - Psest_0373 0.64 -2.2 400,132 - Psest_0373 0.64 +0.4 400,132 - Psest_0373 0.64 +0.8 400,132 - Psest_0373 0.64 +1.1 400,132 - Psest_0373 0.64 -0.2 400,132 - Psest_0373 0.64 -2.0 400,140 + Psest_0373 0.64 -1.4 400,398 + Psest_0373 0.83 +0.0 400,473 - Psest_0373 0.88 -0.2 400,533 + -1.9 400,607 + -1.6 400,607 + +0.0 400,607 + -0.7 400,607 + -3.2 400,607 + +2.3 400,607 + -0.5 400,607 + +0.1 400,607 + +1.8 400,607 + -2.6 400,607 + -0.4 400,607 + +0.0 400,607 + +0.7 400,608 - +0.8 400,608 - +0.7 400,608 - +0.6 400,608 - -1.0 400,608 - +0.4 400,608 - -1.1 400,608 - -0.6 400,608 - -2.0 400,864 - +0.8 400,898 + +0.2 400,899 - -1.3 400,899 - -0.1 400,906 + -0.7 400,907 - +0.6 401,056 + -0.2 401,187 - Psest_0374 0.11 +0.0 401,187 - Psest_0374 0.11 -2.7 401,188 + Psest_0374 0.11 -0.7 401,188 + Psest_0374 0.11 -0.7 401,189 - Psest_0374 0.11 -0.5 401,282 + Psest_0374 0.21 -0.7 401,430 - Psest_0374 0.37 +1.6 401,430 - Psest_0374 0.37 -1.0 401,510 + Psest_0374 0.46 -0.6 401,510 + Psest_0374 0.46 -0.9 401,510 + Psest_0374 0.46 -1.2 401,511 - Psest_0374 0.46 -1.1 401,511 - Psest_0374 0.46 -0.6 401,511 - Psest_0374 0.46 +2.4 401,511 - Psest_0374 0.46 -1.7 401,654 + Psest_0374 0.62 +0.1 401,655 - Psest_0374 0.62 +0.9 401,684 + Psest_0374 0.65 +0.7 401,684 + Psest_0374 0.65 -0.2 401,684 + Psest_0374 0.65 -1.4 401,685 - Psest_0374 0.65 -0.5 401,685 - Psest_0374 0.65 +0.6 401,685 - Psest_0374 0.65 -2.2 401,685 - Psest_0374 0.65 -1.1 401,697 - Psest_0374 0.67 +1.4 401,720 + Psest_0374 0.69 +0.0 401,720 + Psest_0374 0.69 -0.1 401,768 + Psest_0374 0.74 -1.4 401,769 - Psest_0374 0.74 -0.5 401,769 - Psest_0374 0.74 -2.2 401,769 - Psest_0374 0.74 -0.9 401,769 - Psest_0374 0.74 +0.8 401,864 + Psest_0374 0.85 -2.6 401,958 - +0.1 402,000 - -0.9 402,027 - -0.7 402,082 + -0.2 402,082 + -0.4 402,082 + +1.1 402,082 + -0.3 402,082 + -0.6 402,083 - +0.2 402,083 - +2.2 402,083 - -0.5 402,083 - -0.6 402,083 - +1.3 402,083 - +0.4 402,083 - +1.2 402,083 - +1.2 402,090 + -0.3 402,090 + -0.6 402,398 + Psest_0375 0.23 +0.8 402,399 - Psest_0375 0.23 +0.6 402,399 - Psest_0375 0.23 +0.9 402,408 + Psest_0375 0.23 -1.4 402,408 + Psest_0375 0.23 +0.3 402,409 - Psest_0375 0.23 -0.2 402,409 - Psest_0375 0.23 -1.5 402,409 - Psest_0375 0.23 +1.6 402,409 - Psest_0375 0.23 -0.7 402,409 - Psest_0375 0.23 +0.5 402,960 + Psest_0375 0.62 -0.7 402,960 + Psest_0375 0.62 +0.2 402,960 + Psest_0375 0.62 -0.1 402,960 + Psest_0375 0.62 -0.1 402,960 + Psest_0375 0.62 -1.7 402,960 + Psest_0375 0.62 -0.5 402,960 + Psest_0375 0.62 +0.8 402,961 - Psest_0375 0.62 +0.8 402,961 - Psest_0375 0.62 -1.1
Or see this region's nucleotide sequence