Experiment: 1-ethyl-3-methylimidazolium acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0273 and Psest_0274 are separated by 133 nucleotides Psest_0274 and Psest_0275 overlap by 4 nucleotides Psest_0275 and Psest_0276 are separated by 9 nucleotides Psest_0276 and Psest_0277 are separated by 65 nucleotides Psest_0277 and Psest_0278 overlap by 4 nucleotides
Psest_0273: Psest_0273 - arginine/ornithine antiporter, at 289,492 to 290,919
_0273
Psest_0274: Psest_0274 - hypothetical protein, at 291,053 to 291,466
_0274
Psest_0275: Psest_0275 - Protein of unknown function (DUF3392)., at 291,463 to 291,786
_0275
Psest_0276: Psest_0276 - putative oxygen-independent coproporphyrinogen III oxidase, at 291,796 to 292,929
_0276
Psest_0277: Psest_0277 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family, at 292,995 to 293,588
_0277
Psest_0278: Psest_0278 - hypothetical protein, at 293,585 to 294,007
_0278
Position (kb) 291
292
293 Strain fitness (log2 ratio) -2
-1
0
1
2 at 290.891 kb on - strand at 290.891 kb on - strand at 290.891 kb on - strand at 290.891 kb on - strand at 290.891 kb on - strand at 290.924 kb on - strand at 290.955 kb on + strand at 290.955 kb on + strand at 290.979 kb on + strand at 290.980 kb on - strand at 290.980 kb on - strand at 291.023 kb on + strand at 291.024 kb on - strand at 291.123 kb on + strand, within Psest_0274 at 291.123 kb on + strand, within Psest_0274 at 291.123 kb on + strand, within Psest_0274 at 291.123 kb on + strand, within Psest_0274 at 291.124 kb on - strand, within Psest_0274 at 291.124 kb on - strand, within Psest_0274 at 291.124 kb on - strand, within Psest_0274 at 291.212 kb on + strand, within Psest_0274 at 291.212 kb on + strand, within Psest_0274 at 291.212 kb on + strand, within Psest_0274 at 291.213 kb on - strand, within Psest_0274 at 291.222 kb on + strand, within Psest_0274 at 291.243 kb on + strand, within Psest_0274 at 291.243 kb on + strand, within Psest_0274 at 291.243 kb on + strand, within Psest_0274 at 291.244 kb on - strand, within Psest_0274 at 291.244 kb on - strand, within Psest_0274 at 291.244 kb on - strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.249 kb on + strand, within Psest_0274 at 291.250 kb on - strand, within Psest_0274 at 291.250 kb on - strand, within Psest_0274 at 291.464 kb on + strand at 291.464 kb on + strand at 291.465 kb on - strand at 291.527 kb on + strand, within Psest_0275 at 291.527 kb on + strand, within Psest_0275 at 291.527 kb on + strand, within Psest_0275 at 291.527 kb on + strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.723 kb on + strand, within Psest_0275 at 291.775 kb on + strand at 291.797 kb on + strand at 292.067 kb on + strand, within Psest_0276 at 292.106 kb on + strand, within Psest_0276 at 292.107 kb on - strand, within Psest_0276 at 292.107 kb on - strand, within Psest_0276 at 292.176 kb on - strand, within Psest_0276 at 292.176 kb on - strand, within Psest_0276 at 292.229 kb on + strand, within Psest_0276 at 292.230 kb on - strand, within Psest_0276 at 292.598 kb on + strand, within Psest_0276 at 292.820 kb on + strand at 292.821 kb on - strand at 292.821 kb on - strand at 292.907 kb on + strand at 292.907 kb on + strand at 292.908 kb on - strand at 292.956 kb on + strand at 292.957 kb on - strand at 292.999 kb on - strand at 293.332 kb on + strand, within Psest_0277 at 293.332 kb on + strand, within Psest_0277 at 293.333 kb on - strand, within Psest_0277 at 293.649 kb on - strand, within Psest_0278 at 293.703 kb on + strand, within Psest_0278 at 293.703 kb on + strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.925 kb on + strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 40 mM remove 290,891 - -0.7 290,891 - -0.0 290,891 - -0.4 290,891 - -2.5 290,891 - +0.9 290,924 - +0.4 290,955 + -0.6 290,955 + -0.1 290,979 + +0.0 290,980 - +0.1 290,980 - +0.3 291,023 + -0.7 291,024 - -1.7 291,123 + Psest_0274 0.17 -0.3 291,123 + Psest_0274 0.17 -1.0 291,123 + Psest_0274 0.17 -1.7 291,123 + Psest_0274 0.17 -0.2 291,124 - Psest_0274 0.17 -1.6 291,124 - Psest_0274 0.17 -0.1 291,124 - Psest_0274 0.17 -0.2 291,212 + Psest_0274 0.38 -1.7 291,212 + Psest_0274 0.38 -0.6 291,212 + Psest_0274 0.38 -0.4 291,213 - Psest_0274 0.39 +0.6 291,222 + Psest_0274 0.41 +0.7 291,243 + Psest_0274 0.46 +0.5 291,243 + Psest_0274 0.46 +1.2 291,243 + Psest_0274 0.46 +0.6 291,244 - Psest_0274 0.46 +2.4 291,244 - Psest_0274 0.46 +0.5 291,244 - Psest_0274 0.46 +0.2 291,246 + Psest_0274 0.47 -0.1 291,246 + Psest_0274 0.47 +1.0 291,246 + Psest_0274 0.47 -2.7 291,246 + Psest_0274 0.47 -1.0 291,246 + Psest_0274 0.47 +0.9 291,247 - Psest_0274 0.47 +0.1 291,247 - Psest_0274 0.47 +0.5 291,247 - Psest_0274 0.47 +0.4 291,247 - Psest_0274 0.47 -0.3 291,247 - Psest_0274 0.47 +0.4 291,247 - Psest_0274 0.47 +1.1 291,247 - Psest_0274 0.47 +0.2 291,247 - Psest_0274 0.47 +0.4 291,247 - Psest_0274 0.47 +0.4 291,249 + Psest_0274 0.47 -1.0 291,250 - Psest_0274 0.48 -0.7 291,250 - Psest_0274 0.48 -1.8 291,464 + -1.0 291,464 + +0.3 291,465 - -0.8 291,527 + Psest_0275 0.20 -0.8 291,527 + Psest_0275 0.20 -1.6 291,527 + Psest_0275 0.20 -2.4 291,527 + Psest_0275 0.20 -2.1 291,528 - Psest_0275 0.20 -1.2 291,528 - Psest_0275 0.20 -0.6 291,528 - Psest_0275 0.20 -0.9 291,528 - Psest_0275 0.20 +2.1 291,528 - Psest_0275 0.20 -0.4 291,723 + Psest_0275 0.80 -1.9 291,775 + +1.4 291,797 + -0.1 292,067 + Psest_0276 0.24 +0.1 292,106 + Psest_0276 0.27 -0.5 292,107 - Psest_0276 0.27 -1.3 292,107 - Psest_0276 0.27 -0.9 292,176 - Psest_0276 0.34 -2.2 292,176 - Psest_0276 0.34 -0.9 292,229 + Psest_0276 0.38 -0.1 292,230 - Psest_0276 0.38 -1.0 292,598 + Psest_0276 0.71 +1.4 292,820 + -0.9 292,821 - +0.2 292,821 - -1.6 292,907 + -0.0 292,907 + +0.5 292,908 - -2.1 292,956 + -0.8 292,957 - +0.2 292,999 - -0.4 293,332 + Psest_0277 0.57 +1.5 293,332 + Psest_0277 0.57 -0.4 293,333 - Psest_0277 0.57 +1.2 293,649 - Psest_0278 0.15 +0.4 293,703 + Psest_0278 0.28 +0.2 293,703 + Psest_0278 0.28 -1.7 293,704 - Psest_0278 0.28 +0.8 293,704 - Psest_0278 0.28 -1.5 293,704 - Psest_0278 0.28 -0.8 293,706 + Psest_0278 0.29 +0.7 293,706 + Psest_0278 0.29 +0.4 293,706 + Psest_0278 0.29 +1.9 293,706 + Psest_0278 0.29 +1.7 293,706 + Psest_0278 0.29 -0.5 293,707 - Psest_0278 0.29 -1.6 293,707 - Psest_0278 0.29 -0.5 293,707 - Psest_0278 0.29 -0.8 293,707 - Psest_0278 0.29 +0.9 293,707 - Psest_0278 0.29 -0.3 293,913 + Psest_0278 0.78 -0.5 293,913 + Psest_0278 0.78 +0.7 293,913 + Psest_0278 0.78 -1.2 293,913 + Psest_0278 0.78 -1.1 293,914 - Psest_0278 0.78 +0.0 293,914 - Psest_0278 0.78 -0.4 293,914 - Psest_0278 0.78 +1.3 293,914 - Psest_0278 0.78 +0.1 293,914 - Psest_0278 0.78 +0.1 293,914 - Psest_0278 0.78 -0.0 293,914 - Psest_0278 0.78 +1.4 293,914 - Psest_0278 0.78 -0.3 293,925 + Psest_0278 0.80 -2.2 293,926 - Psest_0278 0.81 -1.0 293,926 - Psest_0278 0.81 +1.3 293,926 - Psest_0278 0.81 -1.1
Or see this region's nucleotide sequence