Experiment: acetate 80 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0586 and Psest_0587 are separated by 478 nucleotides Psest_0587 and Psest_0588 are separated by 378 nucleotides
Psest_0586: Psest_0586 - hypothetical protein, at 636,642 to 637,451
_0586
Psest_0587: Psest_0587 - Domain of Unknown Function (DUF326)., at 637,930 to 638,259
_0587
Psest_0588: Psest_0588 - Short-chain dehydrogenases of various substrate specificities, at 638,638 to 639,363
_0588
Position (kb) 637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 636.975 kb on + strand, within Psest_0586 at 636.975 kb on + strand, within Psest_0586 at 636.975 kb on + strand, within Psest_0586 at 636.975 kb on + strand, within Psest_0586 at 636.976 kb on - strand, within Psest_0586 at 636.976 kb on - strand, within Psest_0586 at 636.976 kb on - strand, within Psest_0586 at 637.020 kb on - strand, within Psest_0586 at 637.047 kb on - strand, within Psest_0586 at 637.047 kb on - strand, within Psest_0586 at 637.065 kb on + strand, within Psest_0586 at 637.066 kb on - strand, within Psest_0586 at 637.066 kb on - strand, within Psest_0586 at 637.066 kb on - strand, within Psest_0586 at 637.066 kb on - strand, within Psest_0586 at 637.108 kb on + strand, within Psest_0586 at 637.108 kb on + strand, within Psest_0586 at 637.108 kb on + strand, within Psest_0586 at 637.109 kb on - strand, within Psest_0586 at 637.187 kb on + strand, within Psest_0586 at 637.188 kb on - strand, within Psest_0586 at 637.310 kb on + strand, within Psest_0586 at 637.310 kb on + strand, within Psest_0586 at 637.310 kb on + strand, within Psest_0586 at 637.310 kb on + strand, within Psest_0586 at 637.313 kb on + strand, within Psest_0586 at 637.449 kb on + strand at 637.449 kb on + strand at 637.459 kb on + strand at 637.460 kb on - strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.461 kb on + strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.462 kb on - strand at 637.494 kb on - strand at 637.494 kb on - strand at 637.494 kb on - strand at 637.494 kb on - strand at 637.538 kb on + strand at 637.539 kb on - strand at 637.584 kb on - strand at 637.611 kb on + strand at 637.611 kb on + strand at 637.611 kb on + strand at 637.612 kb on - strand at 637.612 kb on - strand at 637.612 kb on - strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.615 kb on + strand at 637.616 kb on - strand at 637.616 kb on - strand at 637.616 kb on - strand at 637.616 kb on - strand at 637.616 kb on - strand at 637.619 kb on + strand at 637.619 kb on + strand at 637.619 kb on + strand at 637.620 kb on - strand at 637.620 kb on - strand at 637.620 kb on - strand at 637.620 kb on - strand at 637.620 kb on - strand at 637.788 kb on + strand at 637.788 kb on + strand at 637.788 kb on + strand at 637.789 kb on - strand at 637.793 kb on + strand at 637.794 kb on - strand at 637.794 kb on - strand at 637.794 kb on - strand at 637.803 kb on + strand at 637.804 kb on - strand at 637.804 kb on - strand at 637.804 kb on - strand at 637.843 kb on + strand at 637.843 kb on + strand at 637.844 kb on - strand at 637.844 kb on - strand at 637.876 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.903 kb on - strand at 637.903 kb on - strand at 637.903 kb on - strand at 637.903 kb on - strand at 637.927 kb on + strand at 637.927 kb on + strand at 637.927 kb on + strand at 637.928 kb on - strand at 637.928 kb on - strand at 637.928 kb on - strand at 637.928 kb on - strand at 637.928 kb on - strand at 638.027 kb on + strand, within Psest_0587 at 638.117 kb on - strand, within Psest_0587 at 638.121 kb on + strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.289 kb on - strand at 638.444 kb on - strand at 638.469 kb on + strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.503 kb on + strand at 638.651 kb on + strand at 638.681 kb on + strand at 638.681 kb on + strand at 638.681 kb on + strand at 638.682 kb on - strand at 638.684 kb on + strand at 638.894 kb on + strand, within Psest_0588 at 638.894 kb on + strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 639.009 kb on + strand, within Psest_0588 at 639.090 kb on + strand, within Psest_0588 at 639.091 kb on - strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.185 kb on + strand, within Psest_0588 at 639.185 kb on + strand, within Psest_0588 at 639.186 kb on - strand, within Psest_0588 at 639.196 kb on + strand, within Psest_0588 at 639.197 kb on - strand, within Psest_0588 at 639.197 kb on - strand, within Psest_0588 at 639.233 kb on + strand, within Psest_0588 at 639.233 kb on + strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 80 mM remove 636,975 + Psest_0586 0.41 +1.0 636,975 + Psest_0586 0.41 -0.3 636,975 + Psest_0586 0.41 +0.4 636,975 + Psest_0586 0.41 -1.2 636,976 - Psest_0586 0.41 -1.2 636,976 - Psest_0586 0.41 +1.6 636,976 - Psest_0586 0.41 -1.1 637,020 - Psest_0586 0.47 -0.9 637,047 - Psest_0586 0.50 +0.0 637,047 - Psest_0586 0.50 -1.3 637,065 + Psest_0586 0.52 +0.9 637,066 - Psest_0586 0.52 -1.4 637,066 - Psest_0586 0.52 +0.5 637,066 - Psest_0586 0.52 +2.7 637,066 - Psest_0586 0.52 +0.2 637,108 + Psest_0586 0.58 -1.1 637,108 + Psest_0586 0.58 -0.9 637,108 + Psest_0586 0.58 +0.8 637,109 - Psest_0586 0.58 +1.2 637,187 + Psest_0586 0.67 +0.7 637,188 - Psest_0586 0.67 -0.0 637,310 + Psest_0586 0.82 +1.5 637,310 + Psest_0586 0.82 +1.1 637,310 + Psest_0586 0.82 +0.8 637,310 + Psest_0586 0.82 +0.0 637,313 + Psest_0586 0.83 +0.7 637,449 + -0.7 637,449 + +0.4 637,459 + -1.1 637,460 - -1.0 637,461 + +1.5 637,461 + -0.1 637,461 + -1.7 637,461 + +1.1 637,461 + +0.3 637,461 + -0.2 637,461 + +0.2 637,461 + -0.7 637,461 + -1.8 637,461 + +1.8 637,461 + +1.5 637,461 + -1.2 637,461 + +0.7 637,461 + -0.3 637,461 + +2.0 637,461 + -0.8 637,461 + -0.7 637,461 + -0.2 637,461 + -1.7 637,461 + +1.4 637,461 + +0.3 637,461 + +1.8 637,461 + -0.6 637,461 + +1.6 637,461 + +1.0 637,461 + -1.3 637,461 + +1.1 637,461 + -1.2 637,461 + +3.5 637,461 + +0.4 637,462 - +0.9 637,462 - -0.2 637,462 - -0.2 637,462 - +0.1 637,462 - -0.6 637,462 - -1.1 637,462 - -0.4 637,462 - -1.2 637,462 - -0.6 637,462 - +1.6 637,462 - +0.3 637,462 - +0.0 637,462 - +0.9 637,462 - -1.4 637,462 - +0.7 637,462 - -1.3 637,462 - +1.5 637,462 - +3.9 637,462 - -0.2 637,462 - +0.5 637,462 - +0.5 637,462 - +0.7 637,462 - +1.1 637,462 - +1.0 637,462 - -0.5 637,462 - +0.3 637,462 - +1.3 637,462 - -1.3 637,462 - -0.2 637,462 - -0.4 637,494 - +1.0 637,494 - +0.5 637,494 - +0.6 637,494 - -1.6 637,538 + -0.2 637,539 - -2.0 637,584 - -0.5 637,611 + -1.5 637,611 + -0.3 637,611 + +0.2 637,612 - +0.0 637,612 - +0.2 637,612 - +0.3 637,615 + -0.9 637,615 + +3.2 637,615 + -1.1 637,615 + +1.5 637,615 + +0.0 637,615 + -0.8 637,615 + +0.7 637,616 - -0.6 637,616 - +0.4 637,616 - -0.7 637,616 - +0.1 637,616 - -0.0 637,619 + +1.0 637,619 + -1.5 637,619 + +1.2 637,620 - +3.9 637,620 - +1.3 637,620 - -0.7 637,620 - +1.4 637,620 - -0.7 637,788 + +0.5 637,788 + +0.6 637,788 + +0.1 637,789 - -0.6 637,793 + +0.4 637,794 - +0.2 637,794 - +0.4 637,794 - +0.9 637,803 + -0.7 637,804 - -2.0 637,804 - -0.2 637,804 - -0.5 637,843 + -1.9 637,843 + -1.9 637,844 - +0.3 637,844 - -0.1 637,876 + -0.5 637,902 + -1.1 637,902 + +0.4 637,902 + +0.1 637,902 + -1.0 637,902 + -0.1 637,903 - +1.0 637,903 - -0.6 637,903 - +0.6 637,903 - -0.2 637,927 + +0.2 637,927 + -1.1 637,927 + +0.2 637,928 - +1.4 637,928 - -0.2 637,928 - +1.3 637,928 - -0.2 637,928 - +0.7 638,027 + Psest_0587 0.29 -1.0 638,117 - Psest_0587 0.57 -0.8 638,121 + Psest_0587 0.58 +0.0 638,122 - Psest_0587 0.58 -0.6 638,122 - Psest_0587 0.58 -0.3 638,122 - Psest_0587 0.58 -0.6 638,122 - Psest_0587 0.58 -3.2 638,289 - -2.1 638,444 - -1.3 638,469 + +0.7 638,470 - -0.2 638,470 - +1.0 638,470 - -0.6 638,470 - +1.1 638,503 + +1.9 638,651 + +0.7 638,681 + +0.3 638,681 + -0.9 638,681 + +0.4 638,682 - -0.5 638,684 + -0.6 638,894 + Psest_0588 0.35 -0.4 638,894 + Psest_0588 0.35 +1.1 638,895 - Psest_0588 0.35 -0.4 638,895 - Psest_0588 0.35 +0.4 638,895 - Psest_0588 0.35 -1.1 638,895 - Psest_0588 0.35 +0.7 639,009 + Psest_0588 0.51 -0.5 639,090 + Psest_0588 0.62 -1.3 639,091 - Psest_0588 0.62 -1.1 639,103 + Psest_0588 0.64 +1.3 639,103 + Psest_0588 0.64 +0.8 639,103 + Psest_0588 0.64 -1.1 639,104 - Psest_0588 0.64 -1.1 639,104 - Psest_0588 0.64 +0.8 639,104 - Psest_0588 0.64 -1.4 639,104 - Psest_0588 0.64 -0.6 639,104 - Psest_0588 0.64 -1.4 639,104 - Psest_0588 0.64 +0.3 639,104 - Psest_0588 0.64 -0.4 639,104 - Psest_0588 0.64 +0.9 639,104 - Psest_0588 0.64 -0.2 639,185 + Psest_0588 0.75 -0.7 639,185 + Psest_0588 0.75 +0.2 639,186 - Psest_0588 0.75 +1.3 639,196 + Psest_0588 0.77 -0.3 639,197 - Psest_0588 0.77 -1.8 639,197 - Psest_0588 0.77 -0.6 639,233 + Psest_0588 0.82 -0.4 639,233 + Psest_0588 0.82 +0.4 639,234 - Psest_0588 0.82 -0.3 639,234 - Psest_0588 0.82 -0.6 639,234 - Psest_0588 0.82 -0.0 639,234 - Psest_0588 0.82 -1.2
Or see this region's nucleotide sequence