Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0868 and Psest_0869 are separated by 174 nucleotides Psest_0869 and Psest_0870 are separated by 150 nucleotides Psest_0870 and Psest_0871 are separated by 81 nucleotides
Psest_0868: Psest_0868 - Glutathione S-transferase, at 944,030 to 944,653
_0868
Psest_0869: Psest_0869 - Acetyltransferase (isoleucine patch superfamily), at 944,828 to 945,376
_0869
Psest_0870: Psest_0870 - Alpha-glucosidase (EC 3.2.1.20) <small>(from data)</small>, at 945,527 to 947,155
_0870
Psest_0871: Psest_0871 - maltose ABC transporter, ATPase component MalK <small>(from data)</small>, at 947,237 to 948,352
_0871
Position (kb) 945
946
947
948 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 944.582 kb on + strand, within Psest_0868 at 944.582 kb on + strand, within Psest_0868 at 944.582 kb on + strand, within Psest_0868 at 944.582 kb on + strand, within Psest_0868 at 944.583 kb on - strand, within Psest_0868 at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.634 kb on + strand at 944.634 kb on + strand at 944.634 kb on + strand at 944.870 kb on + strand at 944.870 kb on + strand at 944.870 kb on + strand at 944.870 kb on + strand at 944.871 kb on - strand at 944.871 kb on - strand at 944.871 kb on - strand at 944.871 kb on - strand at 944.874 kb on - strand at 944.933 kb on + strand, within Psest_0869 at 945.158 kb on + strand, within Psest_0869 at 945.158 kb on + strand, within Psest_0869 at 945.159 kb on - strand, within Psest_0869 at 945.420 kb on + strand at 945.484 kb on + strand at 945.484 kb on + strand at 945.484 kb on + strand at 945.485 kb on - strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.519 kb on - strand at 945.519 kb on - strand at 945.569 kb on + strand at 945.569 kb on + strand at 945.569 kb on + strand at 945.579 kb on - strand at 945.579 kb on - strand at 945.586 kb on + strand at 945.586 kb on + strand at 945.586 kb on + strand at 945.587 kb on - strand at 945.587 kb on - strand at 945.587 kb on - strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.912 kb on - strand, within Psest_0870 at 945.912 kb on - strand, within Psest_0870 at 945.912 kb on - strand, within Psest_0870 at 946.011 kb on - strand, within Psest_0870 at 946.011 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.148 kb on + strand, within Psest_0870 at 946.148 kb on + strand, within Psest_0870 at 946.149 kb on - strand, within Psest_0870 at 946.149 kb on - strand, within Psest_0870 at 946.149 kb on - strand, within Psest_0870 at 946.249 kb on + strand, within Psest_0870 at 946.249 kb on + strand, within Psest_0870 at 946.250 kb on - strand, within Psest_0870 at 946.250 kb on - strand, within Psest_0870 at 946.250 kb on - strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.254 kb on - strand, within Psest_0870 at 946.412 kb on + strand, within Psest_0870 at 946.451 kb on + strand, within Psest_0870 at 946.634 kb on + strand, within Psest_0870 at 946.634 kb on + strand, within Psest_0870 at 946.634 kb on + strand, within Psest_0870 at 946.634 kb on + strand, within Psest_0870 at 946.635 kb on - strand, within Psest_0870 at 946.635 kb on - strand, within Psest_0870 at 946.635 kb on - strand, within Psest_0870 at 946.635 kb on - strand, within Psest_0870 at 946.635 kb on - strand, within Psest_0870 at 946.705 kb on + strand, within Psest_0870 at 946.946 kb on + strand, within Psest_0870 at 946.947 kb on - strand, within Psest_0870 at 946.947 kb on - strand, within Psest_0870 at 946.947 kb on - strand, within Psest_0870 at 946.947 kb on - strand, within Psest_0870 at 946.947 kb on - strand, within Psest_0870 at 947.073 kb on + strand at 947.094 kb on - strand at 947.135 kb on + strand at 947.199 kb on + strand at 947.233 kb on - strand at 947.233 kb on - strand at 947.273 kb on + strand at 947.273 kb on + strand at 947.274 kb on - strand at 947.274 kb on - strand at 947.486 kb on + strand, within Psest_0871 at 947.486 kb on + strand, within Psest_0871 at 947.486 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.901 kb on - strand, within Psest_0871
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 944,582 + Psest_0868 0.88 +1.1 944,582 + Psest_0868 0.88 +1.2 944,582 + Psest_0868 0.88 -3.1 944,582 + Psest_0868 0.88 -0.6 944,583 - Psest_0868 0.89 -1.3 944,632 + -2.4 944,632 + +0.1 944,632 + -1.5 944,632 + -0.2 944,632 + -1.0 944,632 + -0.4 944,632 + -0.1 944,632 + +0.5 944,632 + -0.3 944,632 + -0.7 944,632 + +0.8 944,632 + +1.8 944,632 + +0.6 944,632 + +0.8 944,633 - +0.9 944,633 - -0.1 944,633 - -0.5 944,633 - -0.5 944,633 - -0.3 944,633 - +0.3 944,633 - -1.9 944,633 - -0.9 944,633 - +1.6 944,633 - +1.0 944,634 + +0.1 944,634 + +0.9 944,634 + -0.9 944,870 + +0.2 944,870 + -1.2 944,870 + -2.1 944,870 + -0.6 944,871 - -2.7 944,871 - -0.4 944,871 - -1.8 944,871 - +1.3 944,874 - -1.8 944,933 + Psest_0869 0.19 -0.0 945,158 + Psest_0869 0.60 +1.8 945,158 + Psest_0869 0.60 -1.2 945,159 - Psest_0869 0.60 -1.1 945,420 + -0.4 945,484 + -1.1 945,484 + -1.1 945,484 + -0.4 945,485 - -1.5 945,514 + -0.0 945,514 + -0.9 945,514 + +0.5 945,514 + -0.3 945,514 + +0.5 945,514 + +1.2 945,514 + -0.1 945,515 - -0.6 945,515 - -1.1 945,515 - -0.9 945,515 - -1.4 945,515 - +0.5 945,515 - -1.8 945,515 - -0.3 945,519 - -0.5 945,519 - +0.1 945,569 + -0.4 945,569 + -2.0 945,569 + -0.4 945,579 - +1.1 945,579 - -1.3 945,586 + -1.2 945,586 + -2.7 945,586 + +0.4 945,587 - -0.8 945,587 - -2.4 945,587 - -2.2 945,650 + -1.4 945,650 + -1.8 945,650 + -0.8 945,650 + -2.1 945,650 + -1.6 945,912 - Psest_0870 0.24 -1.9 945,912 - Psest_0870 0.24 -3.0 945,912 - Psest_0870 0.24 -2.3 946,011 - Psest_0870 0.30 -1.5 946,011 - Psest_0870 0.30 -0.5 946,014 - Psest_0870 0.30 -1.6 946,014 - Psest_0870 0.30 -0.7 946,014 - Psest_0870 0.30 -2.4 946,014 - Psest_0870 0.30 -2.2 946,014 - Psest_0870 0.30 -2.8 946,014 - Psest_0870 0.30 -2.3 946,148 + Psest_0870 0.38 -2.6 946,148 + Psest_0870 0.38 -2.1 946,149 - Psest_0870 0.38 -2.2 946,149 - Psest_0870 0.38 +0.3 946,149 - Psest_0870 0.38 -4.0 946,249 + Psest_0870 0.44 -0.5 946,249 + Psest_0870 0.44 -0.8 946,250 - Psest_0870 0.44 -2.9 946,250 - Psest_0870 0.44 -1.9 946,250 - Psest_0870 0.44 +1.1 946,253 + Psest_0870 0.45 -1.2 946,253 + Psest_0870 0.45 -2.1 946,253 + Psest_0870 0.45 -0.7 946,253 + Psest_0870 0.45 -2.6 946,253 + Psest_0870 0.45 -1.6 946,253 + Psest_0870 0.45 -1.7 946,253 + Psest_0870 0.45 -1.4 946,253 + Psest_0870 0.45 -0.1 946,254 - Psest_0870 0.45 -1.3 946,412 + Psest_0870 0.54 -1.5 946,451 + Psest_0870 0.57 -0.6 946,634 + Psest_0870 0.68 -1.7 946,634 + Psest_0870 0.68 -1.6 946,634 + Psest_0870 0.68 -4.3 946,634 + Psest_0870 0.68 -2.3 946,635 - Psest_0870 0.68 -1.6 946,635 - Psest_0870 0.68 -0.1 946,635 - Psest_0870 0.68 -1.5 946,635 - Psest_0870 0.68 -2.5 946,635 - Psest_0870 0.68 -2.9 946,705 + Psest_0870 0.72 -3.0 946,946 + Psest_0870 0.87 -2.7 946,947 - Psest_0870 0.87 -1.6 946,947 - Psest_0870 0.87 +1.6 946,947 - Psest_0870 0.87 -0.7 946,947 - Psest_0870 0.87 +0.7 946,947 - Psest_0870 0.87 -0.9 947,073 + +0.7 947,094 - -1.7 947,135 + -1.6 947,199 + -0.1 947,233 - -0.5 947,233 - +0.5 947,273 + -0.7 947,273 + -1.5 947,274 - +0.3 947,274 - +2.7 947,486 + Psest_0871 0.22 +0.6 947,486 + Psest_0871 0.22 -1.1 947,486 + Psest_0871 0.22 +1.0 947,801 + Psest_0871 0.51 +2.5 947,801 + Psest_0871 0.51 +0.7 947,801 + Psest_0871 0.51 +2.3 947,801 + Psest_0871 0.51 -0.7 947,801 + Psest_0871 0.51 -0.7 947,801 + Psest_0871 0.51 -0.9 947,802 - Psest_0871 0.51 +0.8 947,802 - Psest_0871 0.51 -1.6 947,802 - Psest_0871 0.51 +0.3 947,802 - Psest_0871 0.51 +0.9 947,802 - Psest_0871 0.51 +1.3 947,802 - Psest_0871 0.51 -0.3 947,802 - Psest_0871 0.51 +1.8 947,802 - Psest_0871 0.51 +0.3 947,901 - Psest_0871 0.59 -2.3
Or see this region's nucleotide sequence