Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0743 and Psest_0744 are separated by 360 nucleotides Psest_0744 and Psest_0745 are separated by 212 nucleotides Psest_0745 and Psest_0746 are separated by 49 nucleotides
Psest_0743: Psest_0743 - adenosine deaminase, at 815,727 to 816,776
_0743
Psest_0744: Psest_0744 - Uncharacterized conserved protein, at 817,137 to 817,724
_0744
Psest_0745: Psest_0745 - Domain of Unknown Function (DUF326)., at 817,937 to 818,266
_0745
Psest_0746: Psest_0746 - Protein of unknown function (DUF1826)., at 818,316 to 818,960
_0746
Position (kb) 817
818 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 816.455 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.474 kb on + strand, within Psest_0743 at 816.475 kb on - strand, within Psest_0743 at 816.493 kb on + strand, within Psest_0743 at 816.494 kb on - strand, within Psest_0743 at 816.494 kb on - strand, within Psest_0743 at 816.496 kb on + strand, within Psest_0743 at 816.496 kb on + strand, within Psest_0743 at 816.736 kb on + strand at 816.736 kb on + strand at 816.737 kb on - strand at 816.763 kb on + strand at 816.763 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.785 kb on - strand at 816.785 kb on - strand at 816.785 kb on - strand at 816.785 kb on - strand at 816.882 kb on + strand at 816.883 kb on - strand at 817.086 kb on + strand at 817.086 kb on + strand at 817.086 kb on + strand at 817.087 kb on - strand at 817.116 kb on + strand at 817.117 kb on - strand at 817.117 kb on - strand at 817.117 kb on - strand at 817.138 kb on + strand at 817.138 kb on + strand at 817.139 kb on - strand at 817.139 kb on - strand at 817.175 kb on + strand at 817.584 kb on - strand, within Psest_0744 at 817.750 kb on + strand at 817.767 kb on - strand at 817.851 kb on - strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.857 kb on + strand at 817.952 kb on + strand at 817.953 kb on - strand at 817.953 kb on - strand at 818.551 kb on + strand, within Psest_0746 at 818.551 kb on + strand, within Psest_0746 at 818.552 kb on - strand, within Psest_0746 at 818.552 kb on - strand, within Psest_0746 at 818.552 kb on - strand, within Psest_0746 at 818.568 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 816,455 - Psest_0743 0.69 -2.3 816,455 - Psest_0743 0.69 -0.2 816,455 - Psest_0743 0.69 +0.0 816,474 + Psest_0743 0.71 +0.8 816,475 - Psest_0743 0.71 -1.5 816,493 + Psest_0743 0.73 +1.8 816,494 - Psest_0743 0.73 -0.9 816,494 - Psest_0743 0.73 -0.2 816,496 + Psest_0743 0.73 -0.8 816,496 + Psest_0743 0.73 -1.4 816,736 + +2.9 816,736 + +0.4 816,737 - +0.9 816,763 + +2.3 816,763 + -2.3 816,784 + +0.4 816,784 + +1.6 816,784 + +1.1 816,784 + +1.1 816,785 - -0.4 816,785 - -1.7 816,785 - -0.1 816,785 - -0.3 816,882 + +1.8 816,883 - -0.5 817,086 + -0.3 817,086 + +3.6 817,086 + -1.7 817,087 - -2.0 817,116 + +0.8 817,117 - -1.1 817,117 - -1.0 817,117 - +0.6 817,138 + -0.1 817,138 + -2.4 817,139 - +0.5 817,139 - +0.7 817,175 + -0.5 817,584 - Psest_0744 0.76 -0.9 817,750 + +2.7 817,767 - +0.3 817,851 - -2.7 817,854 + -1.1 817,854 + -0.6 817,854 + +1.2 817,854 + +0.3 817,854 + +0.2 817,854 + -0.1 817,854 + -1.0 817,854 + +0.3 817,854 + -0.6 817,854 + +0.3 817,854 + +0.7 817,854 + -0.9 817,855 - +0.9 817,855 - +2.7 817,855 - -1.7 817,855 - -1.5 817,855 - +0.4 817,855 - +2.8 817,855 - -1.9 817,855 - -0.5 817,855 - +0.4 817,855 - -0.0 817,855 - -0.0 817,855 - +2.2 817,857 + -1.2 817,952 + -1.7 817,953 - -0.7 817,953 - -2.6 818,551 + Psest_0746 0.36 +0.2 818,551 + Psest_0746 0.36 -0.1 818,552 - Psest_0746 0.37 -1.3 818,552 - Psest_0746 0.37 +1.1 818,552 - Psest_0746 0.37 +0.7 818,568 + Psest_0746 0.39 +0.5 818,583 + Psest_0746 0.41 +0.1 818,583 + Psest_0746 0.41 -0.2 818,583 + Psest_0746 0.41 +1.6 818,583 + Psest_0746 0.41 +0.9 818,583 + Psest_0746 0.41 +1.5 818,583 + Psest_0746 0.41 -0.6 818,584 - Psest_0746 0.42 +0.9 818,584 - Psest_0746 0.42 +1.7 818,584 - Psest_0746 0.42 -0.9 818,584 - Psest_0746 0.42 -0.0 818,584 - Psest_0746 0.42 +0.9 818,584 - Psest_0746 0.42 -1.0 818,584 - Psest_0746 0.42 +1.9
Or see this region's nucleotide sequence