Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0513 and Psest_0514 overlap by 1 nucleotides Psest_0514 and Psest_0515 overlap by 4 nucleotides
Psest_0513: Psest_0513 - rod shape-determining protein RodA, at 566,642 to 567,787
_0513
Psest_0514: Psest_0514 - lytic murein transglycosylase B, at 567,787 to 568,812
_0514
Psest_0515: Psest_0515 - rare lipoprotein A, at 568,809 to 569,801
_0515
Position (kb) 567
568
569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 567.864 kb on + strand at 567.898 kb on + strand, within Psest_0514 at 567.898 kb on + strand, within Psest_0514 at 567.946 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 567.996 kb on + strand, within Psest_0514 at 568.100 kb on + strand, within Psest_0514 at 568.101 kb on - strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.201 kb on + strand, within Psest_0514 at 568.357 kb on + strand, within Psest_0514 at 568.357 kb on + strand, within Psest_0514 at 568.357 kb on + strand, within Psest_0514 at 568.408 kb on + strand, within Psest_0514 at 568.486 kb on + strand, within Psest_0514 at 568.486 kb on + strand, within Psest_0514 at 568.486 kb on + strand, within Psest_0514 at 568.720 kb on + strand at 568.720 kb on + strand at 568.735 kb on + strand at 568.737 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.753 kb on + strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.754 kb on - strand at 568.817 kb on + strand at 568.817 kb on + strand at 568.817 kb on + strand at 569.025 kb on + strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.040 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.160 kb on + strand, within Psest_0515 at 569.211 kb on + strand, within Psest_0515 at 569.211 kb on + strand, within Psest_0515 at 569.302 kb on + strand, within Psest_0515 at 569.674 kb on + strand, within Psest_0515 at 569.675 kb on - strand, within Psest_0515 at 569.675 kb on - strand, within Psest_0515
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 567,864 + -1.7 567,898 + Psest_0514 0.11 -2.6 567,898 + Psest_0514 0.11 +2.3 567,946 + Psest_0514 0.15 +1.4 567,996 + Psest_0514 0.20 +0.1 567,996 + Psest_0514 0.20 -0.1 567,996 + Psest_0514 0.20 -0.7 567,996 + Psest_0514 0.20 -0.1 567,996 + Psest_0514 0.20 -1.6 568,100 + Psest_0514 0.31 -1.7 568,101 - Psest_0514 0.31 +0.9 568,201 + Psest_0514 0.40 -0.8 568,201 + Psest_0514 0.40 -0.3 568,201 + Psest_0514 0.40 +0.4 568,201 + Psest_0514 0.40 +1.0 568,357 + Psest_0514 0.56 -2.0 568,357 + Psest_0514 0.56 -2.4 568,357 + Psest_0514 0.56 -2.0 568,408 + Psest_0514 0.61 -1.0 568,486 + Psest_0514 0.68 -1.0 568,486 + Psest_0514 0.68 -1.6 568,486 + Psest_0514 0.68 -1.9 568,720 + -0.1 568,720 + +1.3 568,735 + -0.4 568,737 + +0.3 568,753 + -1.7 568,753 + +0.4 568,753 + -2.6 568,753 + -0.7 568,753 + +0.7 568,753 + +0.2 568,753 + -1.8 568,753 + -1.8 568,753 + +0.1 568,753 + -3.3 568,753 + -0.9 568,753 + -0.9 568,753 + -1.9 568,753 + -0.3 568,753 + -0.5 568,753 + +1.3 568,753 + -0.3 568,753 + -1.4 568,753 + +0.1 568,753 + -0.9 568,753 + -1.8 568,753 + +0.7 568,753 + -0.9 568,753 + -1.8 568,753 + +0.4 568,753 + -1.7 568,754 - +0.4 568,754 - +1.4 568,754 - +0.1 568,754 - +2.4 568,754 - +1.4 568,754 - +0.4 568,754 - +0.9 568,754 - +2.4 568,754 - +0.4 568,754 - +0.9 568,754 - +1.4 568,754 - +2.4 568,817 + -2.2 568,817 + -0.6 568,817 + +0.5 569,025 + Psest_0515 0.22 -2.3 569,026 - Psest_0515 0.22 +0.9 569,026 - Psest_0515 0.22 +0.9 569,026 - Psest_0515 0.22 +0.9 569,040 + Psest_0515 0.23 +0.1 569,061 + Psest_0515 0.25 +0.1 569,061 + Psest_0515 0.25 -1.6 569,061 + Psest_0515 0.25 -1.1 569,061 + Psest_0515 0.25 -1.6 569,061 + Psest_0515 0.25 +0.9 569,160 + Psest_0515 0.35 +1.8 569,211 + Psest_0515 0.40 +0.1 569,211 + Psest_0515 0.40 -0.6 569,302 + Psest_0515 0.50 -0.9 569,674 + Psest_0515 0.87 -0.7 569,675 - Psest_0515 0.87 -1.9 569,675 - Psest_0515 0.87 -1.0
Or see this region's nucleotide sequence