Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0496 and Psest_0497 are separated by 9 nucleotides Psest_0497 and Psest_0498 are separated by 9 nucleotides Psest_0498 and Psest_0499 are separated by 123 nucleotides Psest_0499 and Psest_0500 are separated by 28 nucleotides
Psest_0496: Psest_0496 - flagellar motor stator protein MotA, at 551,076 to 551,927
_0496
Psest_0497: Psest_0497 - Flagellar motor protein, at 551,937 to 552,917
_0497
Psest_0498: Psest_0498 - ribosome small subunit-dependent GTPase A, at 552,927 to 553,958
_0498
Psest_0499: Psest_0499 - hypothetical protein, at 554,082 to 554,888
_0499
Psest_0500: Psest_0500 - Oligoribonuclease (3'->5' exoribonuclease), at 554,917 to 555,459
_0500
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 552.101 kb on + strand, within Psest_0497 at 552.101 kb on + strand, within Psest_0497 at 552.102 kb on - strand, within Psest_0497 at 552.112 kb on - strand, within Psest_0497 at 552.459 kb on + strand, within Psest_0497 at 552.459 kb on + strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.491 kb on + strand, within Psest_0497 at 552.492 kb on - strand, within Psest_0497 at 552.722 kb on + strand, within Psest_0497 at 552.826 kb on + strand at 552.838 kb on + strand at 552.931 kb on + strand at 552.932 kb on - strand at 552.932 kb on - strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.978 kb on - strand at 552.978 kb on - strand at 552.978 kb on - strand at 553.209 kb on - strand, within Psest_0498 at 553.396 kb on + strand, within Psest_0498 at 553.411 kb on + strand, within Psest_0498 at 553.963 kb on + strand at 553.963 kb on + strand at 553.964 kb on - strand at 553.964 kb on - strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.993 kb on + strand at 553.994 kb on - strand at 554.046 kb on + strand at 554.046 kb on + strand at 554.047 kb on - strand at 554.047 kb on - strand at 554.047 kb on - strand at 554.099 kb on + strand at 554.137 kb on + strand at 554.415 kb on + strand, within Psest_0499 at 554.415 kb on + strand, within Psest_0499 at 554.415 kb on + strand, within Psest_0499 at 554.416 kb on - strand, within Psest_0499 at 554.416 kb on - strand, within Psest_0499 at 554.416 kb on - strand, within Psest_0499 at 554.668 kb on - strand, within Psest_0499 at 554.668 kb on - strand, within Psest_0499 at 554.680 kb on - strand, within Psest_0499 at 554.680 kb on - strand, within Psest_0499 at 554.680 kb on - strand, within Psest_0499
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 552,101 + Psest_0497 0.17 +0.4 552,101 + Psest_0497 0.17 -0.8 552,102 - Psest_0497 0.17 +0.4 552,112 - Psest_0497 0.18 +0.1 552,459 + Psest_0497 0.53 +0.4 552,459 + Psest_0497 0.53 -0.7 552,460 - Psest_0497 0.53 +0.2 552,460 - Psest_0497 0.53 +0.5 552,460 - Psest_0497 0.53 -0.3 552,460 - Psest_0497 0.53 +0.2 552,491 + Psest_0497 0.56 +0.3 552,492 - Psest_0497 0.57 +0.3 552,722 + Psest_0497 0.80 +0.5 552,826 + -1.5 552,838 + +1.0 552,931 + +0.9 552,932 - +0.3 552,932 - +2.5 552,977 + +1.5 552,977 + +0.5 552,977 + -0.1 552,977 + +0.7 552,977 + +1.3 552,978 - +3.0 552,978 - +1.2 552,978 - +1.1 553,209 - Psest_0498 0.27 -1.0 553,396 + Psest_0498 0.45 -0.4 553,411 + Psest_0498 0.47 -0.1 553,963 + +1.3 553,963 + +1.5 553,964 - +1.8 553,964 - +2.9 553,993 + -2.1 553,993 + +2.1 553,993 + +1.9 553,993 + +1.9 553,993 + +4.0 553,994 - -2.8 554,046 + +1.3 554,046 + +2.2 554,047 - +0.4 554,047 - +1.3 554,047 - +1.4 554,099 + -2.5 554,137 + +1.2 554,415 + Psest_0499 0.41 -0.4 554,415 + Psest_0499 0.41 -0.6 554,415 + Psest_0499 0.41 +1.4 554,416 - Psest_0499 0.41 +0.9 554,416 - Psest_0499 0.41 -2.5 554,416 - Psest_0499 0.41 +0.3 554,668 - Psest_0499 0.73 -0.2 554,668 - Psest_0499 0.73 +0.7 554,680 - Psest_0499 0.74 +0.8 554,680 - Psest_0499 0.74 -1.8 554,680 - Psest_0499 0.74 -1.7
Or see this region's nucleotide sequence